Wall clock time and date at job start Wed Apr 1 2020 03:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47216 * 2 1 4 4 C 1.38261 * 119.99744 * 270.02277 * 3 2 1 5 5 C 1.38217 * 119.99587 * 179.97438 * 4 3 2 6 6 C 1.38251 * 120.00109 * 359.80621 * 5 4 3 7 7 C 1.38222 * 120.00153 * 0.42635 * 6 5 4 8 8 C 1.50696 * 119.99890 * 179.80308 * 7 6 5 9 9 C 1.50700 * 109.47552 * 269.72709 * 8 7 6 10 10 O 1.21281 * 119.99386 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99916 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99723 * 180.02562 * 11 9 8 13 13 C 1.54324 * 111.68884 * 298.97737 * 12 11 9 14 14 C 1.55048 * 103.94097 * 262.80028 * 13 12 11 15 15 C 1.55057 * 102.10954 * 319.94010 * 14 13 12 16 16 C 1.54326 * 103.93232 * 40.05617 * 15 14 13 17 17 H 1.09006 * 111.69036 * 97.21212 * 16 15 14 18 18 C 1.53780 * 109.06405 * 222.03426 * 16 15 14 19 19 N 1.47214 * 106.38067 * 94.89475 * 18 16 15 20 20 C 1.36932 * 126.69958 * 211.29600 * 19 18 16 21 21 H 1.08005 * 119.99995 * 179.97438 * 20 19 18 22 22 C 1.38808 * 120.00287 * 359.97438 * 20 19 18 23 23 N 1.31619 * 120.00223 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00089 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47095 * 89.99984 * 24 22 20 26 26 H 1.48498 * 109.47252 * 209.99497 * 24 22 20 27 27 H 1.48498 * 109.47193 * 330.00188 * 24 22 20 28 28 C 1.47216 * 106.59295 * 31.28165 * 19 18 16 29 29 C 1.38220 * 119.99911 * 89.99731 * 3 2 1 30 30 H 1.09001 * 109.47322 * 60.00373 * 1 2 3 31 31 H 1.09003 * 109.47136 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47121 * 299.99641 * 1 2 3 33 33 H 1.09004 * 109.47393 * 239.99900 * 2 1 3 34 34 H 1.09001 * 109.47322 * 119.99627 * 2 1 3 35 35 H 1.07996 * 120.00186 * 359.97438 * 4 3 2 36 36 H 1.08003 * 119.99618 * 180.02562 * 5 4 3 37 37 H 1.08004 * 120.00244 * 180.23133 * 6 5 4 38 38 H 1.09002 * 109.46649 * 149.72245 * 8 7 6 39 39 H 1.09006 * 109.47044 * 29.73258 * 8 7 6 40 40 H 0.96998 * 120.00345 * 359.97438 * 11 9 8 41 41 H 1.09007 * 110.53598 * 144.18308 * 13 12 11 42 42 H 1.09010 * 110.65486 * 21.47328 * 13 12 11 43 43 H 1.08997 * 110.90410 * 201.74445 * 14 13 12 44 44 H 1.08999 * 110.93588 * 78.15742 * 14 13 12 45 45 H 1.08994 * 110.54033 * 158.67322 * 15 14 13 46 46 H 1.09001 * 110.53828 * 281.45156 * 15 14 13 47 47 H 1.09001 * 110.07060 * 214.12595 * 18 16 15 48 48 H 1.08997 * 110.07289 * 335.66366 * 18 16 15 49 49 H 0.96997 * 120.00306 * 180.02562 * 23 22 20 50 50 H 1.09005 * 110.06727 * 209.49146 * 28 19 18 51 51 H 1.08997 * 110.07362 * 87.94935 * 28 19 18 52 52 H 1.07990 * 120.00092 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0727 -1.1974 5 6 2.7225 3.3760 -1.1974 6 6 2.9491 4.0291 -0.0001 7 6 2.7237 3.3758 1.1970 8 6 2.9749 4.0862 2.5020 9 6 4.3981 3.8491 2.9373 10 8 5.1356 3.1696 2.2552 11 7 4.8509 4.3912 4.0851 12 6 6.2345 4.1612 4.5080 13 6 6.5205 2.6613 4.7320 14 6 6.3534 2.4736 6.2619 15 6 7.0123 3.7609 6.8215 16 6 6.5503 4.8672 5.8498 17 1 5.6857 5.4073 6.2359 18 6 7.7362 5.7988 5.5490 19 7 8.3452 5.3064 4.3024 20 6 9.6675 5.3772 3.9540 21 1 9.9984 4.9784 3.0064 22 6 10.5828 5.9614 4.8187 23 7 10.1796 6.4478 5.9734 24 14 12.3869 6.0573 4.3437 25 1 12.6402 7.3265 3.6154 26 1 13.2245 6.0144 5.5692 27 1 12.7302 4.9076 3.4688 28 6 7.2548 4.7226 3.5039 29 6 2.2626 2.0724 1.1970 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0823 1.5636 -2.1327 36 1 2.9018 3.8853 -2.1327 37 1 3.3051 5.0487 0.0000 38 1 2.2938 3.7024 3.2615 39 1 2.8082 5.1555 2.3715 40 1 4.2609 4.9344 4.6308 41 1 7.5375 2.4160 4.4254 42 1 5.8005 2.0475 4.1905 43 1 6.8834 1.5850 6.6049 44 1 5.2995 2.4255 6.5356 45 1 6.6557 3.9652 7.8310 46 1 8.0985 3.6708 6.8096 47 1 7.3838 6.8215 5.4147 48 1 8.4611 5.7561 6.3618 49 1 10.8191 6.8564 6.5774 50 1 7.6403 3.9207 2.8742 51 1 6.7892 5.4918 2.8878 52 1 2.0830 1.5632 2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098907799.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:06 Heat of formation + Delta-G solvation = 0.004197 kcal Electronic energy + Delta-G solvation = -30412.632623 eV Core-core repulsion = 26569.667988 eV Total energy + Delta-G solvation = -3842.964635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.33561 -39.47811 -37.96543 -34.57872 -34.36287 -33.33206 -32.44127 -31.39181 -29.69831 -29.40077 -28.27752 -26.94217 -24.59673 -24.33228 -24.08730 -22.30485 -21.35094 -20.54695 -20.35651 -19.16725 -18.80086 -17.21837 -16.56151 -16.44437 -15.89895 -15.68823 -15.16403 -14.75043 -14.66617 -14.25000 -13.92192 -13.81366 -13.71969 -13.47582 -13.39169 -13.27071 -13.04988 -12.96330 -12.63654 -12.19128 -12.03255 -11.90366 -11.78353 -11.42063 -11.24061 -11.01740 -10.96652 -10.89821 -10.87345 -10.62614 -10.52110 -10.26938 -10.18012 -10.03497 -9.93244 -9.88911 -9.66673 -9.39209 -8.80404 -8.71846 -8.62399 -8.55008 -6.83624 -5.62768 -3.06820 1.29990 1.37590 2.92303 3.38185 3.41713 3.46797 3.48792 3.82885 4.50652 4.52973 4.59137 4.75719 4.89654 4.95356 5.04606 5.12063 5.13226 5.19111 5.20229 5.31352 5.36747 5.40551 5.45391 5.51732 5.52698 5.67403 5.68159 5.70561 5.88260 5.90891 5.91907 6.02451 6.04699 6.05700 6.15241 6.16375 6.28910 6.38651 6.42687 6.45194 6.52368 6.57464 6.60604 6.67269 6.83060 6.87795 6.97745 6.99029 7.19042 7.44172 7.64729 7.81829 7.88538 8.41473 8.56995 9.23466 9.83726 10.51075 11.38686 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.002597 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.414649 B =10780.422171 C =11533.353379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.121 4.121 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.057 4.057 8 C -0.105 4.105 9 C 0.511 3.489 10 O -0.524 6.524 11 N -0.712 5.712 12 C 0.159 3.841 13 C -0.110 4.110 14 C -0.125 4.125 15 C -0.109 4.109 16 C -0.114 4.114 17 H 0.069 0.931 18 C 0.139 3.861 19 N -0.593 5.593 20 C -0.213 4.213 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.923 5.923 24 Si 0.915 3.085 25 H -0.290 1.290 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.142 3.858 29 C -0.103 4.103 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.395 0.605 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.080 0.920 47 H 0.003 0.997 48 H 0.130 0.870 49 H 0.252 0.748 50 H 0.050 0.950 51 H 0.012 0.988 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.965 -8.197 -5.780 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.139 4.139 5 C -0.134 4.134 6 C -0.127 4.127 7 C -0.057 4.057 8 C -0.145 4.145 9 C 0.296 3.704 10 O -0.399 6.399 11 N -0.364 5.364 12 C 0.072 3.928 13 C -0.149 4.149 14 C -0.162 4.162 15 C -0.146 4.146 16 C -0.135 4.135 17 H 0.087 0.913 18 C 0.014 3.986 19 N -0.317 5.317 20 C -0.341 4.341 21 H 0.096 0.904 22 C -0.208 4.208 23 N -0.572 5.572 24 Si 0.746 3.254 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.015 3.985 29 C -0.121 4.121 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.229 0.771 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.021 0.979 48 H 0.147 0.853 49 H 0.063 0.937 50 H 0.068 0.932 51 H 0.030 0.970 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.171 -8.620 -6.210 22.797 hybrid contribution 0.563 0.550 -0.021 0.787 sum -19.607 -8.070 -6.231 22.100 Atomic orbital electron populations 1.21743 0.94852 1.01546 1.02128 1.20532 0.95997 0.92839 1.02870 1.19804 0.99397 0.96021 0.93125 1.20963 1.00628 0.95019 0.97315 1.21060 0.99537 0.94965 0.97861 1.20979 0.99562 1.00115 0.92009 1.19249 0.98480 0.94297 0.93673 1.20712 0.95279 1.02387 0.96101 1.20376 0.89042 0.79995 0.80982 1.90736 1.57867 1.38099 1.53201 1.46071 1.13408 1.53169 1.23703 1.21789 0.80099 0.95365 0.95532 1.22630 1.02202 0.94764 0.95299 1.22596 0.99471 0.98110 0.96059 1.22448 1.01688 0.93390 0.97101 1.23040 0.99801 0.97719 0.92905 0.91293 1.22023 0.92185 0.91399 0.93037 1.44452 1.02758 1.67764 1.16704 1.19107 0.81505 1.31949 1.01576 0.90397 1.24749 0.98272 1.00985 0.96779 1.69586 1.32442 1.45258 1.09963 0.86051 0.84457 0.77790 0.77128 1.21688 1.21653 1.20684 1.21496 0.88838 0.95586 0.92622 1.20798 0.99840 0.93934 0.97488 0.92638 0.92528 0.92585 0.91127 0.91056 0.86465 0.86196 0.86275 0.88328 0.88159 0.77136 0.90526 0.91853 0.92235 0.92587 0.92609 0.90141 0.97949 0.85323 0.93703 0.93150 0.96999 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.15 0.37 -0.66 16 2 C -0.09 -0.72 6.06 -27.88 -0.17 -0.89 16 3 C -0.08 -0.91 5.13 -104.62 -0.54 -1.44 16 4 C -0.12 -1.29 9.70 -39.58 -0.38 -1.68 16 5 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 6 C -0.11 -1.31 9.70 -39.58 -0.38 -1.70 16 7 C -0.06 -0.69 4.37 -104.62 -0.46 -1.14 16 8 C -0.10 -1.11 5.83 -29.04 -0.17 -1.28 16 9 C 0.51 7.60 7.14 -10.99 -0.08 7.52 16 10 O -0.52 -10.01 14.02 5.56 0.08 -9.93 16 11 N -0.71 -10.37 5.22 -45.68 -0.24 -10.61 16 12 C 0.16 2.90 0.92 -129.73 -0.12 2.78 16 13 C -0.11 -1.99 5.50 -24.96 -0.14 -2.12 16 14 C -0.12 -1.94 6.92 -24.56 -0.17 -2.11 16 15 C -0.11 -1.89 6.23 -24.95 -0.16 -2.04 16 16 C -0.11 -2.11 3.68 -88.53 -0.33 -2.44 16 17 H 0.07 1.10 7.71 -51.93 -0.40 0.70 16 18 C 0.14 3.33 5.56 -3.25 -0.02 3.31 16 19 N -0.59 -15.38 3.39 -171.14 -0.58 -15.96 16 20 C -0.21 -6.01 10.34 -15.06 -0.16 -6.17 16 21 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 22 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 23 N -0.92 -26.53 10.08 55.49 0.56 -25.97 16 24 Si 0.92 22.26 29.55 -169.99 -5.02 17.24 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.14 3.24 5.31 -3.25 -0.02 3.22 16 29 C -0.10 -1.19 9.36 -39.58 -0.37 -1.56 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.10 0.87 8.08 -51.93 -0.42 0.46 16 40 H 0.39 4.50 8.29 -40.82 -0.34 4.16 16 41 H 0.08 1.56 7.56 -51.93 -0.39 1.17 16 42 H 0.06 1.14 6.65 -51.92 -0.35 0.79 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 1.65 7.56 -51.93 -0.39 1.26 16 47 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 48 H 0.13 3.42 4.88 -51.93 -0.25 3.16 16 49 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 50 H 0.05 1.22 7.56 -51.93 -0.39 0.83 16 51 H 0.01 0.29 8.08 -51.93 -0.42 -0.13 16 52 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 406.77 15.07 6.13 6.13 Total: -1.00 -32.47 406.77 -11.66 -44.13 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -8.81 Total: 5.54 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -3.77 Total: -10.56 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.26 Total: -52.54 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.47 -11.66 -44.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098907799.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.135 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds