Wall clock time and date at job start Wed Apr 1 2020 03:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47216 * 2 1 4 4 C 1.38261 * 119.99744 * 270.02277 * 3 2 1 5 5 C 1.38217 * 119.99587 * 179.97438 * 4 3 2 6 6 C 1.38251 * 120.00109 * 359.80621 * 5 4 3 7 7 C 1.38222 * 120.00153 * 0.42635 * 6 5 4 8 8 C 1.50696 * 119.99890 * 179.80308 * 7 6 5 9 9 C 1.50700 * 109.47552 * 269.72709 * 8 7 6 10 10 O 1.21281 * 119.99386 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99916 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99723 * 180.02562 * 11 9 8 13 13 C 1.54324 * 111.68884 * 298.97737 * 12 11 9 14 14 C 1.55048 * 103.94097 * 262.80028 * 13 12 11 15 15 C 1.55057 * 102.10954 * 319.94010 * 14 13 12 16 16 C 1.54326 * 103.93232 * 40.05617 * 15 14 13 17 17 H 1.09006 * 111.69036 * 97.21212 * 16 15 14 18 18 C 1.53780 * 109.06405 * 222.03426 * 16 15 14 19 19 N 1.47214 * 106.38067 * 94.89475 * 18 16 15 20 20 C 1.36932 * 126.69958 * 211.29600 * 19 18 16 21 21 H 1.08005 * 119.99995 * 179.97438 * 20 19 18 22 22 C 1.38808 * 120.00287 * 359.97438 * 20 19 18 23 23 N 1.31619 * 120.00223 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00089 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47095 * 89.99984 * 24 22 20 26 26 H 1.48498 * 109.47252 * 209.99497 * 24 22 20 27 27 H 1.48498 * 109.47193 * 330.00188 * 24 22 20 28 28 C 1.47216 * 106.59295 * 31.28165 * 19 18 16 29 29 C 1.38220 * 119.99911 * 89.99731 * 3 2 1 30 30 H 1.09001 * 109.47322 * 60.00373 * 1 2 3 31 31 H 1.09003 * 109.47136 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47121 * 299.99641 * 1 2 3 33 33 H 1.09004 * 109.47393 * 239.99900 * 2 1 3 34 34 H 1.09001 * 109.47322 * 119.99627 * 2 1 3 35 35 H 1.07996 * 120.00186 * 359.97438 * 4 3 2 36 36 H 1.08003 * 119.99618 * 180.02562 * 5 4 3 37 37 H 1.08004 * 120.00244 * 180.23133 * 6 5 4 38 38 H 1.09002 * 109.46649 * 149.72245 * 8 7 6 39 39 H 1.09006 * 109.47044 * 29.73258 * 8 7 6 40 40 H 0.96998 * 120.00345 * 359.97438 * 11 9 8 41 41 H 1.09007 * 110.53598 * 144.18308 * 13 12 11 42 42 H 1.09010 * 110.65486 * 21.47328 * 13 12 11 43 43 H 1.08997 * 110.90410 * 201.74445 * 14 13 12 44 44 H 1.08999 * 110.93588 * 78.15742 * 14 13 12 45 45 H 1.08994 * 110.54033 * 158.67322 * 15 14 13 46 46 H 1.09001 * 110.53828 * 281.45156 * 15 14 13 47 47 H 1.09001 * 110.07060 * 214.12595 * 18 16 15 48 48 H 1.08997 * 110.07289 * 335.66366 * 18 16 15 49 49 H 0.96997 * 120.00306 * 180.02562 * 23 22 20 50 50 H 1.09005 * 110.06727 * 209.49146 * 28 19 18 51 51 H 1.08997 * 110.07362 * 87.94935 * 28 19 18 52 52 H 1.07990 * 120.00092 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0727 -1.1974 5 6 2.7225 3.3760 -1.1974 6 6 2.9491 4.0291 -0.0001 7 6 2.7237 3.3758 1.1970 8 6 2.9749 4.0862 2.5020 9 6 4.3981 3.8491 2.9373 10 8 5.1356 3.1696 2.2552 11 7 4.8509 4.3912 4.0851 12 6 6.2345 4.1612 4.5080 13 6 6.5205 2.6613 4.7320 14 6 6.3534 2.4736 6.2619 15 6 7.0123 3.7609 6.8215 16 6 6.5503 4.8672 5.8498 17 1 5.6857 5.4073 6.2359 18 6 7.7362 5.7988 5.5490 19 7 8.3452 5.3064 4.3024 20 6 9.6675 5.3772 3.9540 21 1 9.9984 4.9784 3.0064 22 6 10.5828 5.9614 4.8187 23 7 10.1796 6.4478 5.9734 24 14 12.3869 6.0573 4.3437 25 1 12.6402 7.3265 3.6154 26 1 13.2245 6.0144 5.5692 27 1 12.7302 4.9076 3.4688 28 6 7.2548 4.7226 3.5039 29 6 2.2626 2.0724 1.1970 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0823 1.5636 -2.1327 36 1 2.9018 3.8853 -2.1327 37 1 3.3051 5.0487 0.0000 38 1 2.2938 3.7024 3.2615 39 1 2.8082 5.1555 2.3715 40 1 4.2609 4.9344 4.6308 41 1 7.5375 2.4160 4.4254 42 1 5.8005 2.0475 4.1905 43 1 6.8834 1.5850 6.6049 44 1 5.2995 2.4255 6.5356 45 1 6.6557 3.9652 7.8310 46 1 8.0985 3.6708 6.8096 47 1 7.3838 6.8215 5.4147 48 1 8.4611 5.7561 6.3618 49 1 10.8191 6.8564 6.5774 50 1 7.6403 3.9207 2.8742 51 1 6.7892 5.4918 2.8878 52 1 2.0830 1.5632 2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098907799.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:05 Heat of formation + Delta-G solvation = -17.801951 kcal Electronic energy + Delta-G solvation = -30413.404756 eV Core-core repulsion = 26569.667988 eV Total energy + Delta-G solvation = -3843.736768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.65916 -40.48993 -39.27789 -36.24643 -35.28971 -34.65001 -33.48484 -33.22143 -31.05821 -30.39744 -29.71529 -28.20382 -26.29217 -26.15532 -24.77395 -23.29737 -22.53345 -22.23718 -21.41152 -20.42562 -20.27909 -19.06865 -17.79172 -17.40572 -17.17709 -16.78462 -16.68907 -16.08040 -15.83030 -15.56666 -15.38237 -15.13217 -14.89766 -14.70755 -14.61725 -14.47647 -14.39654 -14.01586 -13.76070 -13.58644 -13.10631 -13.01307 -12.86708 -12.83606 -12.66357 -12.57290 -12.17460 -12.13259 -12.08205 -12.04168 -11.83151 -11.72801 -11.68059 -11.63200 -11.61211 -11.56969 -11.42986 -10.78145 -10.69559 -9.98549 -9.65293 -9.46984 -8.92581 -7.77922 -5.25716 0.44814 0.53546 1.44181 1.45630 1.54727 1.76433 2.23248 2.47886 2.92652 3.28012 3.45836 3.69635 3.71529 3.82500 3.85772 3.90460 4.01287 4.13245 4.25546 4.31677 4.40686 4.41446 4.42533 4.50745 4.53775 4.59848 4.62210 4.63784 4.71717 4.72977 4.78938 4.81385 4.92339 4.97888 5.03391 5.05524 5.10845 5.11741 5.21381 5.23660 5.25878 5.28279 5.40421 5.41156 5.46589 5.59576 5.62294 5.69588 5.74707 5.75291 5.84841 6.16794 6.37184 6.71782 7.08971 7.42119 7.73640 8.40451 9.20576 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.002597 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.414649 B =10780.422171 C =11533.353379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.092 4.092 4 C -0.130 4.130 5 C -0.128 4.128 6 C -0.131 4.131 7 C -0.073 4.073 8 C -0.093 4.093 9 C 0.509 3.491 10 O -0.571 6.571 11 N -0.701 5.701 12 C 0.173 3.827 13 C -0.107 4.107 14 C -0.109 4.109 15 C -0.105 4.105 16 C -0.102 4.102 17 H 0.108 0.892 18 C 0.140 3.860 19 N -0.612 5.612 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.059 4.059 23 N -0.941 5.941 24 Si 0.979 3.021 25 H -0.286 1.286 26 H -0.286 1.286 27 H -0.275 1.275 28 C 0.146 3.854 29 C -0.116 4.116 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.415 0.585 41 H 0.039 0.961 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.039 0.961 47 H -0.019 1.019 48 H 0.103 0.897 49 H 0.250 0.750 50 H 0.023 0.977 51 H -0.002 1.002 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.401 -9.005 -4.950 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.148 4.148 5 C -0.145 4.145 6 C -0.149 4.149 7 C -0.073 4.073 8 C -0.133 4.133 9 C 0.297 3.703 10 O -0.449 6.449 11 N -0.354 5.354 12 C 0.085 3.915 13 C -0.146 4.146 14 C -0.146 4.146 15 C -0.143 4.143 16 C -0.122 4.122 17 H 0.126 0.874 18 C 0.015 3.985 19 N -0.337 5.337 20 C -0.368 4.368 21 H 0.087 0.913 22 C -0.252 4.252 23 N -0.590 5.590 24 Si 0.807 3.193 25 H -0.213 1.213 26 H -0.212 1.212 27 H -0.201 1.201 28 C 0.018 3.982 29 C -0.134 4.134 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.139 0.861 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.253 0.747 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.058 0.942 47 H -0.001 1.001 48 H 0.121 0.879 49 H 0.060 0.940 50 H 0.041 0.959 51 H 0.016 0.984 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.659 -9.415 -5.368 25.118 hybrid contribution 1.344 0.820 -0.382 1.620 sum -21.315 -8.595 -5.750 23.691 Atomic orbital electron populations 1.21710 0.93637 1.02415 1.02063 1.20577 0.96992 0.91439 1.03191 1.20154 0.98860 0.97117 0.93040 1.21261 1.00315 0.95018 0.98240 1.21348 0.99388 0.95457 0.98357 1.21203 1.00349 1.00609 0.92706 1.19484 0.98774 0.94795 0.94245 1.20727 0.92390 1.03886 0.96258 1.21154 0.90430 0.78638 0.80077 1.90730 1.59532 1.40197 1.54478 1.45878 1.11845 1.53448 1.24220 1.21362 0.81090 0.95230 0.93792 1.22515 1.00058 0.94371 0.97622 1.22549 1.01458 0.97395 0.93219 1.22363 0.99410 0.93984 0.98551 1.22947 0.98804 0.97151 0.93342 0.87393 1.21900 0.93576 0.91683 0.91368 1.44677 1.02815 1.68197 1.17995 1.19341 0.83175 1.32562 1.01708 0.91270 1.25529 1.02102 1.00699 0.96826 1.69824 1.33400 1.45350 1.10468 0.85078 0.79561 0.77772 0.76901 1.21332 1.21196 1.20071 1.21515 0.89271 0.94149 0.93237 1.21047 1.00077 0.94013 0.98310 0.92624 0.91190 0.92726 0.90521 0.91036 0.84647 0.84735 0.86091 0.84901 0.85903 0.74700 0.94217 0.91632 0.91226 0.89125 0.89526 0.94233 1.00146 0.87914 0.93964 0.95871 0.98410 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.89 71.98 0.71 -1.00 16 2 C -0.08 -1.30 6.06 29.85 0.18 -1.12 16 3 C -0.09 -1.88 5.13 -19.86 -0.10 -1.98 16 4 C -0.13 -2.66 9.70 22.27 0.22 -2.44 16 5 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 6 C -0.13 -3.10 9.70 22.27 0.22 -2.88 16 7 C -0.07 -1.66 4.37 -19.87 -0.09 -1.75 16 8 C -0.09 -1.74 5.83 29.10 0.17 -1.57 16 9 C 0.51 14.39 7.14 87.66 0.63 15.01 16 10 O -0.57 -21.93 14.02 -3.03 -0.04 -21.97 16 11 N -0.70 -18.89 5.22 -416.84 -2.18 -21.06 16 12 C 0.17 6.23 0.92 4.95 0.00 6.24 16 13 C -0.11 -3.80 5.50 31.74 0.17 -3.63 16 14 C -0.11 -3.09 6.92 32.00 0.22 -2.87 16 15 C -0.11 -3.48 6.23 31.75 0.20 -3.29 16 16 C -0.10 -3.65 3.68 -9.44 -0.03 -3.68 16 17 H 0.11 3.03 7.71 -2.38 -0.02 3.01 16 18 C 0.14 6.86 5.56 86.51 0.48 7.34 16 19 N -0.61 -33.23 3.39 -695.36 -2.36 -35.59 16 20 C -0.24 -14.11 10.34 84.03 0.87 -13.24 16 21 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 22 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 23 N -0.94 -55.57 10.08 21.65 0.22 -55.35 16 24 Si 0.98 46.76 29.55 68.60 2.03 48.78 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 28 C 0.15 6.91 5.31 86.50 0.46 7.37 16 29 C -0.12 -2.55 9.36 22.27 0.21 -2.34 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 34 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 35 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.12 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.13 1.58 8.09 -2.39 -0.02 1.56 16 39 H 0.12 1.76 8.08 -2.38 -0.02 1.74 16 40 H 0.42 7.87 8.29 -92.71 -0.77 7.10 16 41 H 0.04 1.68 7.56 -2.38 -0.02 1.66 16 42 H 0.07 2.30 6.65 -2.38 -0.02 2.28 16 43 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.04 1.63 7.56 -2.39 -0.02 1.62 16 47 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 48 H 0.10 5.64 4.88 -2.39 -0.01 5.63 16 49 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 50 H 0.02 1.19 7.56 -2.38 -0.02 1.18 16 51 H 0.00 -0.09 8.08 -2.39 -0.02 -0.11 16 52 H 0.13 2.40 8.06 -2.92 -0.02 2.38 16 Total: -1.00 -75.14 406.77 3.01 -72.14 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.13 Total: 24.35 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 5.20 Total: -11.30 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -4.31 Total: -112.00 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.04 Total: -21.97 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -75.14 3.01 -72.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098907799.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.336 kcal (2) G-P(sol) polarization free energy of solvation -75.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds