Wall clock time and date at job start Wed Apr 1 2020 02:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38257 * 119.99675 * 2 1 4 4 C 1.38215 * 119.99308 * 180.27435 * 3 2 1 5 5 C 1.38258 * 120.00013 * 359.74595 * 4 3 2 6 6 C 1.50700 * 119.99797 * 179.97438 * 5 4 3 7 7 C 1.38206 * 120.00345 * 0.02562 * 5 4 3 8 8 C 1.50699 * 120.00261 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47180 * 85.01783 * 8 7 5 10 10 O 1.21285 * 119.99775 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00033 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99691 * 179.97438 * 11 9 8 13 13 C 1.54178 * 111.61357 * 299.02027 * 12 11 9 14 14 C 1.54857 * 104.29946 * 261.59655 * 13 12 11 15 15 C 1.54850 * 102.73478 * 321.86682 * 14 13 12 16 16 C 1.54177 * 104.30308 * 38.13686 * 15 14 13 17 17 H 1.09003 * 111.61536 * 98.40279 * 16 15 14 18 18 C 1.53794 * 109.81599 * 222.75535 * 16 15 14 19 19 N 1.47227 * 106.35839 * 132.99172 * 18 16 15 20 20 C 1.36932 * 126.70512 * 148.78210 * 19 18 16 21 21 H 1.08001 * 119.99842 * 342.10283 * 20 19 18 22 22 C 1.38809 * 120.00177 * 162.10630 * 20 19 18 23 23 N 1.31625 * 120.00076 * 159.75495 * 22 20 19 24 24 Si 1.86795 * 119.99980 * 339.75107 * 22 20 19 25 25 H 1.48506 * 109.47140 * 84.68526 * 24 22 20 26 26 H 1.48496 * 109.47459 * 204.68860 * 24 22 20 27 27 H 1.48503 * 109.47123 * 324.68874 * 24 22 20 28 28 C 1.47220 * 106.59459 * 328.76237 * 19 18 16 29 29 C 1.38207 * 119.99843 * 179.76418 * 2 1 3 30 30 H 1.08990 * 109.47402 * 270.23694 * 1 2 3 31 31 H 1.09001 * 109.46691 * 30.23497 * 1 2 3 32 32 H 1.08999 * 109.46833 * 150.23055 * 1 2 3 33 33 H 1.07998 * 120.00435 * 359.97438 * 3 2 1 34 34 H 1.07999 * 119.99630 * 179.71971 * 4 3 2 35 35 H 1.09001 * 109.47139 * 270.02320 * 6 5 4 36 36 H 1.09002 * 109.47338 * 30.01975 * 6 5 4 37 37 H 1.09002 * 109.47352 * 150.02321 * 6 5 4 38 38 H 1.09000 * 109.47171 * 205.01437 * 8 7 5 39 39 H 1.08995 * 109.47015 * 325.01942 * 8 7 5 40 40 H 0.97000 * 119.99669 * 0.02562 * 11 9 8 41 41 H 1.08998 * 110.47048 * 20.30456 * 13 12 11 42 42 H 1.09001 * 110.46285 * 142.89685 * 13 12 11 43 43 H 1.08998 * 110.75776 * 203.55471 * 14 13 12 44 44 H 1.09001 * 110.75286 * 80.17887 * 14 13 12 45 45 H 1.09003 * 110.46522 * 279.42763 * 15 14 13 46 46 H 1.09002 * 110.46380 * 156.84595 * 15 14 13 47 47 H 1.09001 * 110.07739 * 252.21618 * 18 16 15 48 48 H 1.08998 * 110.08423 * 13.71133 * 18 16 15 49 49 H 0.96996 * 119.99793 * 179.97438 * 23 22 20 50 50 H 1.08999 * 110.07843 * 272.01576 * 28 19 18 51 51 H 1.08997 * 110.08145 * 150.45583 * 28 19 18 52 52 H 1.08000 * 120.00337 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0057 5 6 4.2717 -0.0001 -0.0062 6 6 5.7786 -0.0001 -0.0130 7 6 3.5806 -1.1970 -0.0014 8 6 4.3341 -2.5021 -0.0024 9 6 4.6980 -2.8732 1.4122 10 8 4.3767 -2.1494 2.3307 11 7 5.3805 -4.0095 1.6564 12 6 5.7347 -4.3699 3.0315 13 6 6.6432 -3.3070 3.6812 14 6 8.0731 -3.8817 3.5295 15 6 7.8600 -5.3961 3.7730 16 6 6.5128 -5.7057 3.0902 17 1 6.6546 -6.1335 2.0977 18 6 5.6720 -6.6271 3.9899 19 7 4.3199 -6.0459 4.0303 20 6 3.1397 -6.7275 4.1633 21 1 3.1033 -7.7883 3.9639 22 6 1.9901 -6.0550 4.5544 23 7 0.8068 -6.5760 4.3078 24 14 2.1224 -4.4106 5.4306 25 1 2.2533 -3.3240 4.4269 26 1 0.9030 -4.1855 6.2476 27 1 3.3161 -4.4150 6.3139 28 6 4.4845 -4.5887 3.9002 29 6 2.1981 -1.1969 0.0049 30 1 -0.3633 0.0042 1.0275 31 1 -0.3633 0.8879 -0.5175 32 1 -0.3633 -0.8920 -0.5102 33 1 1.6583 2.1327 -0.0004 34 1 4.1204 2.1326 -0.0103 35 1 6.1373 -0.0020 -1.0423 36 1 6.1444 0.8908 0.4975 37 1 6.1443 -0.8892 0.5008 38 1 3.7074 -3.2831 -0.4331 39 1 5.2425 -2.3967 -0.5955 40 1 5.6378 -4.5882 0.9217 41 1 6.5562 -2.3572 3.1535 42 1 6.3919 -3.1833 4.7346 43 1 8.7407 -3.4598 4.2807 44 1 8.4571 -3.7022 2.5253 45 1 7.8032 -5.6060 4.8411 46 1 8.6622 -5.9727 3.3125 47 1 5.6353 -7.6311 3.5670 48 1 6.0964 -6.6595 4.9933 49 1 0.0035 -6.1063 4.5815 50 1 4.6283 -4.1393 4.8828 51 1 3.6106 -4.1553 3.4141 52 1 1.6581 -2.1322 0.0092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099006913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:01 Heat of formation + Delta-G solvation = 3.480251 kcal Electronic energy + Delta-G solvation = -31490.717454 eV Core-core repulsion = 27647.903551 eV Total energy + Delta-G solvation = -3842.813902 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.52973 -39.60684 -38.00013 -34.72138 -34.16162 -33.42595 -32.29878 -31.74966 -29.80086 -29.28578 -28.59793 -27.25800 -25.32559 -24.79159 -24.18731 -22.36406 -21.55836 -20.42516 -20.37548 -19.27327 -19.05582 -17.08016 -16.58653 -16.21542 -16.04763 -15.75161 -15.22545 -14.84717 -14.72407 -14.30497 -14.12278 -14.02903 -13.61857 -13.28319 -13.25575 -13.01840 -12.92898 -12.79875 -12.72047 -12.68623 -12.10892 -12.02429 -11.92126 -11.61191 -11.47182 -11.43246 -11.30269 -11.06212 -10.91692 -10.86302 -10.85463 -10.68230 -10.46262 -10.13284 -10.07616 -9.97993 -9.46865 -9.32917 -8.79211 -8.67191 -8.52110 -8.30908 -7.03346 -5.90381 -3.21776 1.38791 1.47845 2.96868 3.41131 3.50578 3.57302 3.60241 3.86828 4.57955 4.63133 4.65771 4.74174 4.78720 4.90856 5.00398 5.03319 5.13412 5.18225 5.22968 5.26950 5.41935 5.42117 5.50162 5.54432 5.55893 5.57513 5.58863 5.64434 5.66688 5.73209 5.76169 5.79380 5.86043 5.90286 5.93255 6.04062 6.12886 6.16601 6.25705 6.28562 6.34893 6.43989 6.49370 6.54738 6.56947 6.65480 6.71518 6.75251 6.79229 7.08590 7.10092 7.70790 7.84887 8.34435 8.59070 8.85084 9.72733 10.23523 11.25295 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.004638 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.075397 B = 6035.479291 C = 8040.943417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.120 4.120 4 C -0.119 4.119 5 C -0.076 4.076 6 C -0.113 4.113 7 C -0.057 4.057 8 C -0.105 4.105 9 C 0.513 3.487 10 O -0.522 6.522 11 N -0.710 5.710 12 C 0.166 3.834 13 C -0.120 4.120 14 C -0.122 4.122 15 C -0.115 4.115 16 C -0.105 4.105 17 H 0.081 0.919 18 C 0.137 3.863 19 N -0.606 5.606 20 C -0.241 4.241 21 H 0.093 0.907 22 C 0.024 3.976 23 N -0.911 5.911 24 Si 0.875 3.125 25 H -0.275 1.275 26 H -0.303 1.303 27 H -0.276 1.276 28 C 0.112 3.888 29 C -0.101 4.101 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.396 0.604 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.028 0.972 49 H 0.262 0.738 50 H 0.032 0.968 51 H 0.072 0.928 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.982 11.700 -11.987 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.076 4.076 6 C -0.170 4.170 7 C -0.057 4.057 8 C -0.145 4.145 9 C 0.298 3.702 10 O -0.397 6.397 11 N -0.361 5.361 12 C 0.078 3.922 13 C -0.159 4.159 14 C -0.160 4.160 15 C -0.153 4.153 16 C -0.125 4.125 17 H 0.100 0.900 18 C 0.011 3.989 19 N -0.331 5.331 20 C -0.368 4.368 21 H 0.111 0.889 22 C -0.174 4.174 23 N -0.555 5.555 24 Si 0.705 3.295 25 H -0.202 1.202 26 H -0.232 1.232 27 H -0.202 1.202 28 C -0.014 4.014 29 C -0.119 4.119 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.230 0.770 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.045 0.955 49 H 0.072 0.928 50 H 0.050 0.950 51 H 0.090 0.910 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.444 12.155 -11.272 20.144 hybrid contribution -0.068 0.585 0.288 0.655 sum 11.376 12.740 -10.984 20.307 Atomic orbital electron populations 1.20781 0.91309 1.02457 1.02486 1.19837 0.96007 0.93061 1.00210 1.20940 0.94142 0.97281 1.01450 1.20893 0.94118 0.97148 1.01541 1.19619 0.95716 0.92555 0.99740 1.20786 0.91606 1.02937 1.01641 1.19092 0.93299 0.93114 1.00245 1.20714 1.01778 0.96540 0.95481 1.20361 0.77796 0.81174 0.90845 1.90750 1.52143 1.50955 1.45833 1.45947 1.57826 1.23763 1.08603 1.21575 0.95440 0.93435 0.81726 1.22659 0.93665 0.98333 1.01223 1.22520 0.96842 0.95633 1.00993 1.22448 0.96020 0.95869 1.00969 1.22765 0.94663 0.94997 1.00048 0.90045 1.21481 0.85852 0.95613 0.95959 1.44884 1.01678 1.01005 1.85517 1.18629 0.83149 0.94423 1.40581 0.88907 1.24925 0.94912 0.97673 0.99881 1.69814 0.96905 1.40128 1.48652 0.87094 0.76018 0.85452 0.80936 1.20187 1.23153 1.20160 1.22103 0.96377 0.86652 0.96314 1.20925 0.93403 0.97860 0.99725 0.91137 0.91807 0.91510 0.86419 0.86370 0.91432 0.91661 0.91627 0.88035 0.88215 0.76969 0.90934 0.90843 0.91788 0.91894 0.90973 0.91698 0.93067 0.95463 0.92781 0.95022 0.90997 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 36.01 0.36 -0.92 16 2 C -0.09 -1.24 5.88 -104.62 -0.62 -1.85 16 3 C -0.12 -1.50 9.70 -39.58 -0.38 -1.89 16 4 C -0.12 -1.48 9.70 -39.58 -0.38 -1.86 16 5 C -0.08 -1.01 5.88 -104.63 -0.62 -1.62 16 6 C -0.11 -1.20 9.22 36.01 0.33 -0.87 16 7 C -0.06 -0.82 4.37 -104.63 -0.46 -1.27 16 8 C -0.11 -1.34 5.15 -29.03 -0.15 -1.49 16 9 C 0.51 8.48 6.03 -10.98 -0.07 8.42 16 10 O -0.52 -10.91 13.61 5.55 0.08 -10.84 16 11 N -0.71 -10.92 5.23 -45.82 -0.24 -11.16 16 12 C 0.17 2.90 0.92 -129.89 -0.12 2.78 16 13 C -0.12 -1.91 5.64 -25.14 -0.14 -2.05 16 14 C -0.12 -1.48 6.90 -24.78 -0.17 -1.66 16 15 C -0.12 -1.44 6.38 -25.14 -0.16 -1.60 16 16 C -0.10 -1.61 3.62 -88.69 -0.32 -1.93 16 17 H 0.08 1.10 7.69 -51.93 -0.40 0.70 16 18 C 0.14 2.66 6.80 -3.23 -0.02 2.64 16 19 N -0.61 -14.97 3.21 -171.10 -0.55 -15.52 16 20 C -0.24 -6.99 10.66 -15.06 -0.16 -7.15 16 21 H 0.09 2.81 8.06 -52.49 -0.42 2.38 16 22 C 0.02 0.74 5.45 -17.43 -0.09 0.65 16 23 N -0.91 -28.86 13.97 55.49 0.78 -28.09 16 24 Si 0.88 24.37 24.36 -169.99 -4.14 20.23 16 25 H -0.28 -7.86 6.37 56.52 0.36 -7.50 16 26 H -0.30 -8.47 7.11 56.52 0.40 -8.07 16 27 H -0.28 -7.57 6.49 56.52 0.37 -7.21 16 28 C 0.11 2.62 3.54 -3.23 -0.01 2.61 16 29 C -0.10 -1.51 9.34 -39.59 -0.37 -1.87 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.06 0.75 6.16 -51.93 -0.32 0.43 16 38 H 0.10 1.17 8.05 -51.93 -0.42 0.75 16 39 H 0.10 0.95 6.99 -51.93 -0.36 0.59 16 40 H 0.40 4.82 8.28 -40.82 -0.34 4.48 16 41 H 0.07 1.19 6.66 -51.93 -0.35 0.85 16 42 H 0.07 1.27 7.23 -51.93 -0.38 0.89 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.94 7.23 -51.93 -0.38 0.57 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.03 0.53 7.18 -51.93 -0.37 0.15 16 49 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 50 H 0.03 0.80 5.20 -51.93 -0.27 0.53 16 51 H 0.07 1.92 4.48 -51.93 -0.23 1.69 16 52 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 394.36 15.07 5.94 5.94 Total: -1.00 -35.89 394.36 -10.20 -46.08 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -8.51 Total: 4.30 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -3.55 Total: -10.94 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.01 Total: -54.77 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -4.14 Total: 20.23 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.89 -10.20 -46.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099006913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.564 kcal (2) G-P(sol) polarization free energy of solvation -35.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds