Wall clock time and date at job start Wed Apr 1 2020 02:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38242 * 120.00018 * 2 1 4 4 C 1.38237 * 119.99800 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99705 * 179.97438 * 4 3 2 6 6 C 1.38225 * 120.00145 * 0.02562 * 4 3 2 7 7 C 1.38236 * 120.00335 * 359.97438 * 6 4 3 8 8 C 1.50703 * 120.00552 * 179.97438 * 7 6 4 9 9 C 1.50693 * 109.47027 * 89.99657 * 8 7 6 10 10 O 1.21281 * 120.00603 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00017 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00118 * 180.02562 * 11 9 8 13 13 C 1.54145 * 111.89388 * 299.32065 * 12 11 9 14 14 C 1.54835 * 104.35146 * 261.14479 * 13 12 11 15 15 C 1.54840 * 102.73122 * 321.77428 * 14 13 12 16 16 C 1.54146 * 104.34593 * 38.22659 * 15 14 13 17 17 H 1.09002 * 111.89590 * 99.85247 * 16 15 14 18 18 C 1.54471 * 108.79636 * 224.04368 * 16 15 14 19 19 N 1.48339 * 104.30772 * 138.54332 * 18 16 15 20 20 C 1.36932 * 128.19278 * 138.23837 * 19 18 16 21 21 H 1.07991 * 120.00299 * 339.00376 * 20 19 18 22 22 C 1.38820 * 119.99909 * 159.00904 * 20 19 18 23 23 N 1.31614 * 119.99578 * 336.14760 * 22 20 19 24 24 Si 1.86791 * 120.00214 * 156.14503 * 22 20 19 25 25 H 1.48509 * 109.47312 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47140 * 119.99691 * 24 22 20 27 27 H 1.48495 * 109.47406 * 240.00041 * 24 22 20 28 28 C 1.48339 * 103.60652 * 318.49214 * 19 18 16 29 29 C 1.38237 * 119.99883 * 0.25733 * 7 6 4 30 30 H 1.08995 * 109.47337 * 89.99825 * 1 2 3 31 31 H 1.08995 * 109.46950 * 210.00531 * 1 2 3 32 32 H 1.09010 * 109.46686 * 329.99807 * 1 2 3 33 33 H 1.07996 * 119.99839 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.47623 * 270.02507 * 5 4 3 35 35 H 1.09004 * 109.47076 * 30.02662 * 5 4 3 36 36 H 1.09002 * 109.47160 * 150.02303 * 5 4 3 37 37 H 1.08002 * 120.00353 * 179.97438 * 6 4 3 38 38 H 1.09002 * 109.46649 * 330.00292 * 8 7 6 39 39 H 1.08996 * 109.47091 * 210.00643 * 8 7 6 40 40 H 0.97000 * 119.99992 * 0.02562 * 11 9 8 41 41 H 1.09003 * 110.46027 * 142.43039 * 13 12 11 42 42 H 1.09002 * 110.56973 * 19.91910 * 13 12 11 43 43 H 1.09000 * 110.76347 * 203.46446 * 14 13 12 44 44 H 1.09004 * 110.75760 * 80.08301 * 14 13 12 45 45 H 1.09000 * 110.45921 * 279.51138 * 15 14 13 46 46 H 1.09004 * 110.56518 * 156.99296 * 15 14 13 47 47 H 1.09007 * 110.46361 * 19.83255 * 18 16 15 48 48 H 1.08999 * 110.57730 * 257.30804 * 18 16 15 49 49 H 0.97004 * 120.00800 * 354.27829 * 23 22 20 50 50 H 1.09002 * 110.46628 * 160.21538 * 28 19 18 51 51 H 1.09003 * 110.46437 * 282.80266 * 28 19 18 52 52 H 1.07993 * 120.00081 * 179.72435 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0001 -0.0016 7 6 3.5805 -1.1971 -0.0016 8 6 4.3340 -2.5023 -0.0034 9 6 4.5868 -2.9382 1.4168 10 8 4.1936 -2.2565 2.3396 11 7 5.2501 -4.0857 1.6616 12 6 5.4954 -4.5098 3.0422 13 6 6.3411 -3.4807 3.8179 14 6 7.7802 -4.0497 3.7666 15 6 7.5505 -5.5731 3.9220 16 6 6.2708 -5.8513 3.1089 17 1 6.4961 -6.2585 2.1232 18 6 5.3563 -6.7905 3.9259 19 7 3.9933 -6.2405 3.7256 20 6 2.8286 -6.9248 3.5014 21 1 2.8605 -7.9348 3.1204 22 6 1.6068 -6.3203 3.7639 23 7 1.5342 -5.3324 4.6305 24 14 0.0660 -6.9090 2.8873 25 1 0.4136 -8.0243 1.9703 26 1 -0.9230 -7.3824 3.8888 27 1 -0.5177 -5.7890 2.1063 28 6 4.1917 -4.7734 3.8193 29 6 2.1982 -1.1971 -0.0059 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5139 33 1 1.6582 2.1325 0.0004 34 1 4.5150 2.8170 -1.0289 35 1 3.7453 3.2619 0.5132 36 1 5.2868 2.3720 0.5120 37 1 5.3517 0.0000 -0.0024 38 1 5.2858 -2.3715 -0.5182 39 1 3.7443 -3.2615 -0.5171 40 1 5.5650 -4.6308 0.9236 41 1 5.9977 -3.4056 4.8498 42 1 6.2992 -2.5060 3.3316 43 1 8.3782 -3.6631 4.5918 44 1 8.2503 -3.8255 2.8091 45 1 7.3993 -5.8306 4.9703 46 1 8.3919 -6.1310 3.5110 47 1 5.6272 -6.7628 4.9814 48 1 5.4157 -7.8099 3.5448 49 1 2.3162 -5.0813 5.1466 50 1 3.3590 -4.2457 3.3543 51 1 4.3031 -4.4696 4.8601 52 1 1.6582 -2.1324 -0.0104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099010966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:11 Heat of formation + Delta-G solvation = -3.932861 kcal Electronic energy + Delta-G solvation = -31060.220181 eV Core-core repulsion = 27217.084821 eV Total energy + Delta-G solvation = -3843.135359 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 7.26 seconds Orbital eigenvalues (eV) -40.28775 -39.45385 -37.91062 -34.60271 -33.43381 -33.35693 -33.25109 -31.56579 -29.53140 -28.37902 -27.46855 -26.74257 -26.60034 -24.83802 -24.16135 -21.85441 -20.69751 -20.64691 -20.31289 -19.25814 -18.71106 -17.37449 -16.61659 -16.18269 -15.86537 -15.81548 -14.92821 -14.69690 -14.23521 -14.21373 -14.00896 -13.72948 -13.66429 -13.44874 -13.19828 -12.88893 -12.85620 -12.76982 -12.56172 -12.51637 -12.23832 -12.17828 -11.71977 -11.44562 -11.37509 -11.14126 -10.88901 -10.86863 -10.79652 -10.74282 -10.63351 -10.40334 -10.33859 -10.18104 -10.08540 -10.02469 -9.40535 -9.27811 -8.51192 -8.44659 -8.39622 -8.36811 -6.90306 -6.05766 -3.12144 1.47367 1.52573 3.11213 3.50285 3.53091 3.55332 3.66845 3.96348 4.59359 4.71490 4.74724 4.82142 4.87204 4.92618 5.12145 5.22272 5.24398 5.32433 5.34067 5.42696 5.44457 5.52158 5.54915 5.60219 5.64560 5.66580 5.70335 5.70969 5.72952 5.81795 5.82026 5.87161 5.96037 5.99593 6.04386 6.14135 6.24911 6.25765 6.30072 6.43162 6.47721 6.52738 6.64166 6.66728 6.68088 6.71973 6.77869 6.91254 7.13181 7.16768 7.32431 7.80778 7.99356 8.49848 8.73915 9.03309 9.84764 10.49411 11.29799 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008966 B = 0.004322 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.986621 B = 6477.307782 C = 8940.158185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.080 4.080 3 C -0.125 4.125 4 C -0.087 4.087 5 C -0.111 4.111 6 C -0.112 4.112 7 C -0.051 4.051 8 C -0.104 4.104 9 C 0.513 3.487 10 O -0.521 6.521 11 N -0.706 5.706 12 C 0.160 3.840 13 C -0.119 4.119 14 C -0.123 4.123 15 C -0.116 4.116 16 C -0.106 4.106 17 H 0.077 0.923 18 C 0.128 3.872 19 N -0.600 5.600 20 C -0.332 4.332 21 H 0.063 0.937 22 C -0.025 4.025 23 N -0.914 5.914 24 Si 1.071 2.929 25 H -0.292 1.292 26 H -0.293 1.293 27 H -0.290 1.290 28 C 0.140 3.860 29 C -0.106 4.106 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.394 0.606 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.025 0.975 48 H 0.047 0.953 49 H 0.269 0.731 50 H 0.076 0.924 51 H 0.028 0.972 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.571 9.849 -11.540 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.080 4.080 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.167 4.167 6 C -0.130 4.130 7 C -0.052 4.052 8 C -0.144 4.144 9 C 0.298 3.702 10 O -0.396 6.396 11 N -0.357 5.357 12 C 0.073 3.927 13 C -0.158 4.158 14 C -0.160 4.160 15 C -0.154 4.154 16 C -0.127 4.127 17 H 0.096 0.904 18 C 0.002 3.998 19 N -0.324 5.324 20 C -0.459 4.459 21 H 0.080 0.920 22 C -0.227 4.227 23 N -0.554 5.554 24 Si 0.901 3.099 25 H -0.219 1.219 26 H -0.220 1.220 27 H -0.217 1.217 28 C 0.014 3.986 29 C -0.124 4.124 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.134 0.866 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.227 0.773 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.043 0.957 48 H 0.066 0.934 49 H 0.080 0.920 50 H 0.094 0.906 51 H 0.046 0.954 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.492 10.529 -11.078 17.021 hybrid contribution 1.808 -0.770 -0.043 1.966 sum 9.300 9.758 -11.121 17.475 Atomic orbital electron populations 1.20792 0.91286 1.03075 1.01982 1.19834 0.95988 0.92973 0.99231 1.20827 0.93469 0.97312 1.02673 1.19768 0.93788 0.95015 1.00120 1.20748 0.99888 0.94230 1.01869 1.20744 0.99178 0.91457 1.01646 1.19213 0.93479 0.93464 0.98996 1.20695 1.01744 0.96289 0.95666 1.20314 0.77899 0.81162 0.90839 1.90745 1.49258 1.53871 1.45744 1.45825 1.58268 1.23523 1.08086 1.21775 0.97167 0.92287 0.81515 1.22633 0.93842 0.98645 1.00679 1.22518 0.97042 0.95613 1.00846 1.22444 0.96734 0.95870 1.00385 1.22997 0.94716 0.95505 0.99450 0.90447 1.21914 0.86782 0.95442 0.95711 1.45211 1.02773 1.00515 1.83946 1.19725 0.83597 1.00332 1.42284 0.91959 1.25792 0.99683 0.98867 0.98346 1.70676 1.32772 1.31156 1.20830 0.83453 0.75498 0.75199 0.75782 1.21873 1.22040 1.21699 1.21948 0.94579 0.86314 0.95793 1.20911 0.93481 0.97817 1.00224 0.91403 0.91175 0.91696 0.86506 0.91511 0.91744 0.91702 0.86623 0.88512 0.88120 0.77284 0.90921 0.91206 0.92017 0.92107 0.91229 0.92079 0.95720 0.93405 0.91950 0.90584 0.95379 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 36.00 0.36 -1.00 16 2 C -0.08 -1.14 5.88 -104.62 -0.62 -1.75 16 3 C -0.12 -1.63 9.36 -39.58 -0.37 -2.00 16 4 C -0.09 -1.12 5.88 -104.63 -0.62 -1.73 16 5 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 6 C -0.11 -1.54 9.36 -39.59 -0.37 -1.91 16 7 C -0.05 -0.76 4.37 -104.62 -0.46 -1.22 16 8 C -0.10 -1.39 5.83 -29.04 -0.17 -1.56 16 9 C 0.51 9.02 6.90 -10.99 -0.08 8.94 16 10 O -0.52 -11.43 13.55 5.56 0.08 -11.36 16 11 N -0.71 -11.73 5.27 -45.54 -0.24 -11.97 16 12 C 0.16 2.98 0.91 -129.57 -0.12 2.87 16 13 C -0.12 -2.03 5.62 -25.17 -0.14 -2.17 16 14 C -0.12 -1.64 6.90 -24.79 -0.17 -1.81 16 15 C -0.12 -1.61 6.36 -25.16 -0.16 -1.77 16 16 C -0.11 -1.78 3.70 -88.14 -0.33 -2.10 16 17 H 0.08 1.18 7.79 -51.93 -0.40 0.78 16 18 C 0.13 2.66 6.76 -2.26 -0.02 2.64 16 19 N -0.60 -15.44 3.22 -168.70 -0.54 -15.98 16 20 C -0.33 -9.51 10.22 -15.06 -0.15 -9.67 16 21 H 0.06 1.77 7.93 -52.49 -0.42 1.36 16 22 C -0.02 -0.72 5.14 -17.43 -0.09 -0.81 16 23 N -0.91 -28.86 12.78 55.49 0.71 -28.15 16 24 Si 1.07 26.14 29.98 -169.99 -5.10 21.04 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C 0.14 3.44 4.03 -2.48 -0.01 3.43 16 29 C -0.11 -1.66 9.36 -39.58 -0.37 -2.03 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 32 H 0.06 0.69 8.09 -51.92 -0.42 0.27 16 33 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 36 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 37 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16 39 H 0.10 1.23 8.08 -51.93 -0.42 0.81 16 40 H 0.39 5.35 8.35 -40.82 -0.34 5.01 16 41 H 0.07 1.33 7.18 -51.93 -0.37 0.95 16 42 H 0.07 1.24 6.68 -51.93 -0.35 0.90 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.99 7.18 -51.93 -0.37 0.62 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.03 0.52 7.20 -51.93 -0.37 0.15 16 48 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 49 H 0.27 8.64 6.45 -40.82 -0.26 8.38 16 50 H 0.08 2.18 6.04 -51.93 -0.31 1.86 16 51 H 0.03 0.74 6.83 -51.93 -0.35 0.38 16 52 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 405.89 15.07 6.12 6.12 Total: -1.00 -35.18 405.89 -11.17 -46.34 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -8.68 Total: 8.32 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -3.51 Total: -14.36 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.07 Total: -56.11 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.10 Total: 21.04 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.18 -11.17 -46.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099010966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.412 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.26 seconds