Wall clock time and date at job start Wed Apr 1 2020 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38242 * 120.00018 * 2 1 4 4 C 1.38237 * 119.99800 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99705 * 179.97438 * 4 3 2 6 6 C 1.38225 * 120.00145 * 0.02562 * 4 3 2 7 7 C 1.38236 * 120.00335 * 359.97438 * 6 4 3 8 8 C 1.50703 * 120.00552 * 179.97438 * 7 6 4 9 9 C 1.50693 * 109.47027 * 89.99657 * 8 7 6 10 10 O 1.21281 * 120.00603 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00017 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00118 * 180.02562 * 11 9 8 13 13 C 1.54145 * 111.89388 * 299.32065 * 12 11 9 14 14 C 1.54835 * 104.35146 * 261.14479 * 13 12 11 15 15 C 1.54840 * 102.73122 * 321.77428 * 14 13 12 16 16 C 1.54146 * 104.34593 * 38.22659 * 15 14 13 17 17 H 1.09002 * 111.89590 * 99.85247 * 16 15 14 18 18 C 1.54471 * 108.79636 * 224.04368 * 16 15 14 19 19 N 1.48339 * 104.30772 * 138.54332 * 18 16 15 20 20 C 1.36932 * 128.19278 * 138.23837 * 19 18 16 21 21 H 1.07991 * 120.00299 * 339.00376 * 20 19 18 22 22 C 1.38820 * 119.99909 * 159.00904 * 20 19 18 23 23 N 1.31614 * 119.99578 * 336.14760 * 22 20 19 24 24 Si 1.86791 * 120.00214 * 156.14503 * 22 20 19 25 25 H 1.48509 * 109.47312 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47140 * 119.99691 * 24 22 20 27 27 H 1.48495 * 109.47406 * 240.00041 * 24 22 20 28 28 C 1.48339 * 103.60652 * 318.49214 * 19 18 16 29 29 C 1.38237 * 119.99883 * 0.25733 * 7 6 4 30 30 H 1.08995 * 109.47337 * 89.99825 * 1 2 3 31 31 H 1.08995 * 109.46950 * 210.00531 * 1 2 3 32 32 H 1.09010 * 109.46686 * 329.99807 * 1 2 3 33 33 H 1.07996 * 119.99839 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.47623 * 270.02507 * 5 4 3 35 35 H 1.09004 * 109.47076 * 30.02662 * 5 4 3 36 36 H 1.09002 * 109.47160 * 150.02303 * 5 4 3 37 37 H 1.08002 * 120.00353 * 179.97438 * 6 4 3 38 38 H 1.09002 * 109.46649 * 330.00292 * 8 7 6 39 39 H 1.08996 * 109.47091 * 210.00643 * 8 7 6 40 40 H 0.97000 * 119.99992 * 0.02562 * 11 9 8 41 41 H 1.09003 * 110.46027 * 142.43039 * 13 12 11 42 42 H 1.09002 * 110.56973 * 19.91910 * 13 12 11 43 43 H 1.09000 * 110.76347 * 203.46446 * 14 13 12 44 44 H 1.09004 * 110.75760 * 80.08301 * 14 13 12 45 45 H 1.09000 * 110.45921 * 279.51138 * 15 14 13 46 46 H 1.09004 * 110.56518 * 156.99296 * 15 14 13 47 47 H 1.09007 * 110.46361 * 19.83255 * 18 16 15 48 48 H 1.08999 * 110.57730 * 257.30804 * 18 16 15 49 49 H 0.97004 * 120.00800 * 354.27829 * 23 22 20 50 50 H 1.09002 * 110.46628 * 160.21538 * 28 19 18 51 51 H 1.09003 * 110.46437 * 282.80266 * 28 19 18 52 52 H 1.07993 * 120.00081 * 179.72435 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0001 -0.0016 7 6 3.5805 -1.1971 -0.0016 8 6 4.3340 -2.5023 -0.0034 9 6 4.5868 -2.9382 1.4168 10 8 4.1936 -2.2565 2.3396 11 7 5.2501 -4.0857 1.6616 12 6 5.4954 -4.5098 3.0422 13 6 6.3411 -3.4807 3.8179 14 6 7.7802 -4.0497 3.7666 15 6 7.5505 -5.5731 3.9220 16 6 6.2708 -5.8513 3.1089 17 1 6.4961 -6.2585 2.1232 18 6 5.3563 -6.7905 3.9259 19 7 3.9933 -6.2405 3.7256 20 6 2.8286 -6.9248 3.5014 21 1 2.8605 -7.9348 3.1204 22 6 1.6068 -6.3203 3.7639 23 7 1.5342 -5.3324 4.6305 24 14 0.0660 -6.9090 2.8873 25 1 0.4136 -8.0243 1.9703 26 1 -0.9230 -7.3824 3.8888 27 1 -0.5177 -5.7890 2.1063 28 6 4.1917 -4.7734 3.8193 29 6 2.1982 -1.1971 -0.0059 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5139 33 1 1.6582 2.1325 0.0004 34 1 4.5150 2.8170 -1.0289 35 1 3.7453 3.2619 0.5132 36 1 5.2868 2.3720 0.5120 37 1 5.3517 0.0000 -0.0024 38 1 5.2858 -2.3715 -0.5182 39 1 3.7443 -3.2615 -0.5171 40 1 5.5650 -4.6308 0.9236 41 1 5.9977 -3.4056 4.8498 42 1 6.2992 -2.5060 3.3316 43 1 8.3782 -3.6631 4.5918 44 1 8.2503 -3.8255 2.8091 45 1 7.3993 -5.8306 4.9703 46 1 8.3919 -6.1310 3.5110 47 1 5.6272 -6.7628 4.9814 48 1 5.4157 -7.8099 3.5448 49 1 2.3162 -5.0813 5.1466 50 1 3.3590 -4.2457 3.3543 51 1 4.3031 -4.4696 4.8601 52 1 1.6582 -2.1324 -0.0104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099010966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:04 Heat of formation + Delta-G solvation = -25.040456 kcal Electronic energy + Delta-G solvation = -31061.135475 eV Core-core repulsion = 27217.084821 eV Total energy + Delta-G solvation = -3844.050653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 6.36 seconds Orbital eigenvalues (eV) -41.72077 -40.59998 -39.32956 -36.46134 -34.71885 -34.41031 -34.38437 -33.53628 -30.98814 -29.77979 -28.88480 -27.86724 -27.57783 -26.42282 -26.01765 -23.31128 -22.15607 -21.75110 -21.64186 -20.55725 -20.20829 -19.40250 -18.07886 -17.34345 -17.19889 -16.92877 -16.36994 -16.16999 -15.91549 -15.59328 -15.38640 -15.28284 -15.06925 -14.75465 -14.33356 -14.12753 -14.01897 -13.99192 -13.87609 -13.85845 -13.38837 -13.34510 -12.99883 -12.71132 -12.65303 -12.57780 -12.41765 -12.33253 -12.22826 -12.00529 -11.90996 -11.90392 -11.86949 -11.78708 -11.68450 -11.56007 -11.29559 -10.74877 -10.61808 -9.98095 -9.51607 -9.43411 -9.05490 -8.38108 -5.40427 0.40574 0.46694 1.48965 1.59347 1.73238 1.73762 2.25378 2.58627 2.85137 3.17646 3.39082 3.42779 3.64775 3.76838 3.84493 3.92208 3.92784 4.04762 4.21160 4.25692 4.34433 4.38152 4.40664 4.42953 4.49116 4.49975 4.55944 4.58325 4.67574 4.68219 4.75519 4.75942 4.82541 4.85431 4.89911 4.97184 4.98081 5.02628 5.04535 5.11108 5.15778 5.26045 5.27472 5.28833 5.34399 5.46398 5.58155 5.60945 5.63774 5.71689 5.79733 6.14904 6.22578 6.67117 6.78912 7.40204 7.63754 8.33701 8.97003 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008966 B = 0.004322 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.986621 B = 6477.307782 C = 8940.158185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.091 4.091 5 C -0.108 4.108 6 C -0.124 4.124 7 C -0.066 4.066 8 C -0.094 4.094 9 C 0.507 3.493 10 O -0.572 6.572 11 N -0.698 5.698 12 C 0.167 3.833 13 C -0.118 4.118 14 C -0.107 4.107 15 C -0.109 4.109 16 C -0.092 4.092 17 H 0.105 0.895 18 C 0.121 3.879 19 N -0.624 5.624 20 C -0.332 4.332 21 H 0.066 0.934 22 C -0.084 4.084 23 N -0.950 5.950 24 Si 1.120 2.880 25 H -0.262 1.262 26 H -0.289 1.289 27 H -0.293 1.293 28 C 0.153 3.847 29 C -0.140 4.140 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.140 0.860 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.111 0.889 40 H 0.412 0.588 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.099 0.901 47 H 0.021 0.979 48 H 0.056 0.944 49 H 0.248 0.752 50 H 0.025 0.975 51 H -0.007 1.007 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.352 9.883 -14.097 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.152 4.152 4 C -0.091 4.091 5 C -0.165 4.165 6 C -0.142 4.142 7 C -0.067 4.067 8 C -0.134 4.134 9 C 0.294 3.706 10 O -0.451 6.451 11 N -0.350 5.350 12 C 0.079 3.921 13 C -0.157 4.157 14 C -0.144 4.144 15 C -0.147 4.147 16 C -0.112 4.112 17 H 0.124 0.876 18 C -0.004 4.004 19 N -0.349 5.349 20 C -0.460 4.460 21 H 0.084 0.916 22 C -0.279 4.279 23 N -0.593 5.593 24 Si 0.944 3.056 25 H -0.187 1.187 26 H -0.216 1.216 27 H -0.220 1.220 28 C 0.026 3.974 29 C -0.158 4.158 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.158 0.842 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.129 0.871 40 H 0.249 0.751 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.117 0.883 47 H 0.038 0.962 48 H 0.075 0.925 49 H 0.058 0.942 50 H 0.044 0.956 51 H 0.010 0.990 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.337 10.518 -13.672 20.110 hybrid contribution 0.938 -0.782 0.826 1.474 sum 11.275 9.735 -12.846 19.670 Atomic orbital electron populations 1.20814 0.90130 1.02833 1.03165 1.20157 0.97166 0.93109 0.99035 1.21158 0.94020 0.97727 1.02302 1.20236 0.94047 0.96295 0.98493 1.20804 0.99744 0.92589 1.03328 1.21042 1.00211 0.91365 1.01591 1.19442 0.93344 0.94660 0.99230 1.20719 1.03839 0.95909 0.92884 1.21096 0.76670 0.80686 0.92110 1.90727 1.51131 1.55495 1.47760 1.45732 1.57982 1.23494 1.07757 1.21562 0.94054 0.94326 0.82162 1.22558 0.96492 0.97978 0.98655 1.22474 0.94180 0.94767 1.03021 1.22432 0.96055 0.96593 0.99591 1.22960 0.94818 0.92772 1.00646 0.87645 1.22170 0.84945 0.96877 0.96393 1.45497 1.03972 1.01296 1.84171 1.20062 0.84916 1.00512 1.40537 0.91633 1.27275 1.03256 0.98797 0.98556 1.70821 1.31844 1.33574 1.23066 0.82827 0.72094 0.75514 0.75203 1.18653 1.21564 1.22042 1.21712 0.95996 0.85340 0.94365 1.21024 0.94390 0.97877 1.02530 0.89469 0.92944 0.90318 0.84196 0.89543 0.90827 0.91193 0.84794 0.84359 0.87089 0.75115 0.93548 0.92184 0.90120 0.89639 0.92059 0.88253 0.96158 0.92548 0.94169 0.95631 0.98967 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 10.01 71.23 0.71 -2.02 16 2 C -0.09 -2.75 5.88 -19.86 -0.12 -2.87 16 3 C -0.13 -3.42 9.36 22.27 0.21 -3.21 16 4 C -0.09 -2.22 5.88 -19.87 -0.12 -2.34 16 5 C -0.11 -1.82 10.01 71.24 0.71 -1.10 16 6 C -0.12 -3.29 9.36 22.27 0.21 -3.08 16 7 C -0.07 -1.99 4.37 -19.86 -0.09 -2.07 16 8 C -0.09 -2.44 5.83 29.10 0.17 -2.27 16 9 C 0.51 18.03 6.90 87.65 0.60 18.63 16 10 O -0.57 -26.49 13.55 -3.03 -0.04 -26.53 16 11 N -0.70 -22.62 5.27 -416.37 -2.19 -24.82 16 12 C 0.17 6.23 0.91 5.06 0.00 6.24 16 13 C -0.12 -4.00 5.62 31.61 0.18 -3.82 16 14 C -0.11 -2.49 6.90 31.85 0.22 -2.27 16 15 C -0.11 -2.60 6.36 31.61 0.20 -2.40 16 16 C -0.09 -2.86 3.70 -9.19 -0.03 -2.89 16 17 H 0.11 2.75 7.79 -2.39 -0.02 2.73 16 18 C 0.12 4.98 6.76 86.53 0.59 5.57 16 19 N -0.62 -33.17 3.22 -687.65 -2.22 -35.38 16 20 C -0.33 -19.52 10.22 84.04 0.86 -18.66 16 21 H 0.07 3.74 7.93 -2.92 -0.02 3.72 16 22 C -0.08 -5.09 5.14 84.86 0.44 -4.66 16 23 N -0.95 -63.69 12.78 21.65 0.28 -63.42 16 24 Si 1.12 54.06 29.98 68.60 2.06 56.11 16 25 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 27 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 28 C 0.15 7.95 4.03 86.38 0.35 8.30 16 29 C -0.14 -4.59 9.36 22.27 0.21 -4.38 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.43 8.09 -2.39 -0.02 1.41 16 32 H 0.08 1.65 8.09 -2.38 -0.02 1.63 16 33 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.11 8.09 -2.38 -0.02 1.09 16 36 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 37 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.14 2.38 8.09 -2.39 -0.02 2.36 16 39 H 0.11 2.64 8.08 -2.39 -0.02 2.62 16 40 H 0.41 10.16 8.35 -92.71 -0.77 9.38 16 41 H 0.05 1.79 7.18 -2.39 -0.02 1.77 16 42 H 0.06 2.15 6.68 -2.39 -0.02 2.13 16 43 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.06 1.59 7.18 -2.39 -0.02 1.58 16 46 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 47 H 0.02 0.86 7.20 -2.38 -0.02 0.84 16 48 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 49 H 0.25 17.25 6.45 -92.71 -0.60 16.65 16 50 H 0.03 1.56 6.04 -2.39 -0.01 1.55 16 51 H -0.01 -0.42 6.83 -2.39 -0.02 -0.44 16 52 H 0.10 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -84.51 405.89 3.49 -81.02 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.31 Total: 32.34 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 5.30 Total: -19.32 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -4.13 Total: -123.62 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.04 Total: -26.53 kcal Atomic # 14 Polarization: 54.06 SS G_CDS: 2.06 Total: 56.11 kcal Total: -84.51 3.49 -81.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099010966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.976 kcal (2) G-P(sol) polarization free energy of solvation -84.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.36 seconds