Wall clock time and date at job start Wed Apr 1 2020 03:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38236 * 119.99994 * 269.73222 * 3 2 1 5 5 C 1.38240 * 119.99507 * 179.74413 * 4 3 2 6 6 C 1.38237 * 120.00097 * 0.52303 * 5 4 3 7 7 C 1.50696 * 119.99818 * 179.76963 * 6 5 4 8 8 C 1.50705 * 109.46997 * 269.97915 * 7 6 5 9 9 O 1.21272 * 120.00185 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99800 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00095 * 179.97438 * 10 8 7 12 12 C 1.54178 * 111.61216 * 298.58870 * 11 10 8 13 13 C 1.56230 * 103.64842 * 260.32462 * 12 11 10 14 14 C 1.54854 * 103.17322 * 322.66048 * 13 12 11 15 15 C 1.54184 * 104.30053 * 37.76988 * 14 13 12 16 16 H 1.08998 * 112.25376 * 98.78411 * 15 14 13 17 17 C 1.53800 * 109.12491 * 223.08122 * 15 14 13 18 18 N 1.47223 * 106.35585 * 132.66803 * 17 15 14 19 19 C 1.36940 * 126.70025 * 148.74524 * 18 17 15 20 20 H 1.07995 * 119.99985 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99776 * 0.02705 * 19 18 17 22 22 N 1.31617 * 119.99990 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99944 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47212 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47337 * 119.99799 * 23 21 19 26 26 H 1.48502 * 109.46972 * 239.99741 * 23 21 19 27 27 C 1.47219 * 106.60053 * 328.76634 * 18 17 15 28 28 C 1.38230 * 119.99957 * 359.75360 * 6 5 4 29 29 C 1.38235 * 120.00199 * 359.96975 * 28 6 5 30 30 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 34 34 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 35 35 H 1.07997 * 120.00153 * 359.97438 * 4 3 2 36 36 H 1.07999 * 119.99660 * 180.29285 * 5 4 3 37 37 H 1.09003 * 109.47220 * 29.97913 * 7 6 5 38 38 H 1.08994 * 109.47107 * 149.98175 * 7 6 5 39 39 H 0.97008 * 120.00018 * 0.02562 * 10 8 7 40 40 H 1.08995 * 110.46943 * 20.29502 * 12 11 10 41 41 H 1.09004 * 110.46752 * 142.88644 * 12 11 10 42 42 H 1.09001 * 110.86721 * 204.05548 * 13 12 11 43 43 H 1.08996 * 110.38774 * 81.04117 * 13 12 11 44 44 H 1.08997 * 110.46878 * 279.06092 * 14 13 12 45 45 H 1.09008 * 110.46484 * 156.46764 * 14 13 12 46 46 H 1.09003 * 110.07493 * 13.44832 * 17 15 14 47 47 H 1.09001 * 110.07641 * 251.88996 * 17 15 14 48 48 H 0.97002 * 120.00084 * 180.02562 * 22 21 19 49 49 H 1.09000 * 110.07961 * 272.01236 * 27 18 17 50 50 H 1.08993 * 110.12961 * 150.48571 * 27 18 17 51 51 H 1.08001 * 120.00304 * 180.02562 * 28 6 5 52 52 H 1.07998 * 120.00589 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2680 2.0706 -1.1971 5 6 2.7238 3.3757 -1.1971 6 6 2.9542 4.0273 0.0001 7 6 3.4560 5.4483 0.0002 8 6 4.9630 5.4488 0.0004 9 8 5.5698 4.3988 0.0000 10 7 5.6365 6.6163 -0.0001 11 6 7.1015 6.6168 0.0007 12 6 7.6690 5.9321 1.2601 13 6 8.0410 7.1280 2.1940 14 6 8.5786 8.1928 1.2066 15 6 7.6729 8.0541 -0.0334 16 1 6.8807 8.8025 -0.0518 17 6 8.5414 8.1166 -1.3012 18 7 8.1102 6.9972 -2.1547 19 6 8.1175 6.9618 -3.5236 20 1 7.7746 6.0790 -4.0428 21 6 8.5655 8.0606 -4.2440 22 7 8.9828 9.1366 -3.6112 23 14 8.5747 8.0126 -6.1113 24 1 8.0599 6.6992 -6.5753 25 1 7.7095 9.0982 -6.6387 26 1 9.9626 8.2020 -6.6045 27 6 7.6693 5.9234 -1.2492 28 6 2.7240 3.3756 1.1972 29 6 2.2627 2.0725 1.1972 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.0926 1.5600 -2.1324 36 1 2.9034 3.8850 -2.1323 37 1 3.0926 5.9620 -0.8899 38 1 3.0924 5.9620 0.8900 39 1 5.1511 7.4562 -0.0002 40 1 6.9190 5.2827 1.7116 41 1 8.5668 5.3651 1.0139 42 1 8.8125 6.8381 2.9074 43 1 7.1552 7.4944 2.7128 44 1 9.6159 7.9822 0.9465 45 1 8.4873 9.1909 1.6355 46 1 9.5936 8.0042 -1.0399 47 1 8.3824 9.0635 -1.8173 48 1 9.2956 9.9045 -4.1146 49 1 8.5158 5.2935 -0.9756 50 1 6.8959 5.3230 -1.7279 51 1 2.9035 3.8848 2.1326 52 1 2.0824 1.5634 2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099053592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:10 Heat of formation + Delta-G solvation = 0.238326 kcal Electronic energy + Delta-G solvation = -30343.741935 eV Core-core repulsion = 26500.787452 eV Total energy + Delta-G solvation = -3842.954483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.30971 -39.43943 -37.91452 -34.70089 -34.45345 -33.30782 -31.54338 -31.20691 -30.91207 -29.41546 -28.04368 -26.86137 -24.69719 -24.40610 -23.36757 -22.74214 -21.47663 -20.57362 -20.25200 -19.31789 -18.76304 -17.20306 -16.38780 -16.24770 -15.87607 -15.66719 -15.15479 -14.85263 -14.81788 -14.23645 -14.05936 -13.86988 -13.76038 -13.51137 -13.45401 -13.31602 -12.92510 -12.66668 -12.45279 -12.14627 -12.05201 -11.78029 -11.61683 -11.41508 -11.29393 -11.20933 -10.99766 -10.90477 -10.87270 -10.79267 -10.69390 -10.55418 -10.24996 -10.19196 -9.91043 -9.73742 -9.50284 -9.34477 -8.87645 -8.72382 -8.49632 -8.49092 -6.83789 -5.62815 -3.07107 1.31755 1.44999 2.99156 3.39253 3.45349 3.46036 3.48058 3.88894 4.49191 4.58191 4.69635 4.77193 4.86387 4.93886 5.00150 5.04177 5.15462 5.19379 5.27356 5.29863 5.35437 5.43315 5.49607 5.51999 5.58316 5.67271 5.70952 5.78600 5.81292 5.87039 5.91603 5.93234 6.02846 6.06458 6.08085 6.09268 6.19329 6.28470 6.41433 6.45366 6.49302 6.59796 6.60037 6.62621 6.71611 6.80061 6.88884 7.02252 7.23491 7.48000 7.63608 7.81782 7.94213 8.40986 8.62603 9.23050 9.83497 10.51510 11.38142 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.002946 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.984540 B = 9500.747680 C =11360.349282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.117 4.117 5 C -0.100 4.100 6 C -0.062 4.062 7 C -0.105 4.105 8 C 0.512 3.488 9 O -0.529 6.529 10 N -0.707 5.707 11 C 0.162 3.838 12 C -0.117 4.117 13 C -0.123 4.123 14 C -0.113 4.113 15 C -0.112 4.112 16 H 0.074 0.926 17 C 0.139 3.861 18 N -0.598 5.598 19 C -0.212 4.212 20 H 0.077 0.923 21 C -0.014 4.014 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.136 3.864 28 C -0.103 4.103 29 C -0.119 4.119 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.396 0.604 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.011 0.989 47 H 0.123 0.877 48 H 0.251 0.749 49 H 0.024 0.976 50 H 0.048 0.952 51 H 0.118 0.882 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 -8.673 12.551 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.135 4.135 5 C -0.118 4.118 6 C -0.063 4.063 7 C -0.145 4.145 8 C 0.298 3.702 9 O -0.405 6.405 10 N -0.358 5.358 11 C 0.075 3.925 12 C -0.156 4.156 13 C -0.161 4.161 14 C -0.151 4.151 15 C -0.132 4.132 16 H 0.092 0.908 17 C 0.014 3.986 18 N -0.321 5.321 19 C -0.341 4.341 20 H 0.095 0.905 21 C -0.209 4.209 22 N -0.572 5.572 23 Si 0.745 3.255 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.009 3.991 28 C -0.121 4.121 29 C -0.137 4.137 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.230 0.770 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.029 0.971 47 H 0.140 0.860 48 H 0.062 0.938 49 H 0.042 0.958 50 H 0.066 0.934 51 H 0.136 0.864 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.302 -9.324 12.308 21.046 hybrid contribution -0.109 0.469 -0.975 1.087 sum -14.411 -8.854 11.333 20.359 Atomic orbital electron populations 1.21744 0.94886 1.01493 1.02169 1.20529 0.96006 0.92910 1.02755 1.19840 0.99571 0.96042 0.93284 1.20950 1.00311 0.94770 0.97424 1.21003 0.98382 0.94846 0.97574 1.19257 0.98723 0.94786 0.93489 1.20710 0.93420 0.95443 1.04960 1.20343 0.89179 0.84130 0.76556 1.90712 1.69964 1.31195 1.48658 1.46022 1.06951 1.07995 1.74782 1.21730 0.78275 0.96586 0.95907 1.22875 1.00743 0.96898 0.95042 1.22758 0.99888 0.96080 0.97388 1.22427 0.99655 0.98134 0.94893 1.22990 0.98415 0.93756 0.98060 0.90817 1.22076 0.92716 0.96729 0.87100 1.44598 1.74349 1.11907 1.01294 1.19153 1.35442 0.99564 0.79902 0.90511 1.24755 1.01627 0.96357 0.98177 1.69610 1.49879 1.05010 1.32752 0.85990 0.77273 0.77254 0.84991 1.20563 1.21797 1.21758 1.21670 0.96388 0.91359 0.89700 1.20913 0.99045 0.94874 0.97275 1.20906 1.00642 0.94806 0.97325 0.92628 0.92573 0.92575 0.91127 0.91190 0.86312 0.86144 0.88106 0.88395 0.77029 0.91199 0.91035 0.92164 0.92318 0.91104 0.92076 0.97076 0.86011 0.93790 0.95795 0.93377 0.86429 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.69 16 2 C -0.08 -0.72 6.07 -27.88 -0.17 -0.89 16 3 C -0.09 -0.97 5.13 -104.62 -0.54 -1.50 16 4 C -0.12 -1.38 9.70 -39.58 -0.38 -1.77 16 5 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 6 C -0.06 -0.79 4.37 -104.63 -0.46 -1.25 16 7 C -0.11 -1.23 5.83 -29.03 -0.17 -1.40 16 8 C 0.51 8.03 6.80 -10.98 -0.07 7.95 16 9 O -0.53 -10.26 13.53 5.56 0.08 -10.18 16 10 N -0.71 -10.98 5.23 -45.83 -0.24 -11.22 16 11 C 0.16 2.94 0.94 -129.89 -0.12 2.81 16 12 C -0.12 -1.92 5.75 -24.38 -0.14 -2.06 16 13 C -0.12 -1.71 6.92 -24.02 -0.17 -1.88 16 14 C -0.11 -1.75 6.38 -25.13 -0.16 -1.91 16 15 C -0.11 -2.05 3.67 -88.69 -0.33 -2.38 16 16 H 0.07 1.28 7.69 -51.93 -0.40 0.88 16 17 C 0.14 3.32 5.77 -3.23 -0.02 3.31 16 18 N -0.60 -15.54 3.39 -171.10 -0.58 -16.12 16 19 C -0.21 -6.00 10.34 -15.06 -0.16 -6.16 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.41 5.49 -17.43 -0.10 -0.50 16 22 N -0.92 -26.62 10.08 55.49 0.56 -26.06 16 23 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 C 0.14 3.09 6.00 -3.23 -0.02 3.07 16 28 C -0.10 -1.23 9.70 -39.59 -0.38 -1.61 16 29 C -0.12 -1.32 9.70 -39.58 -0.38 -1.71 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 38 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.40 5.17 8.28 -40.82 -0.34 4.83 16 40 H 0.07 1.17 6.70 -51.93 -0.35 0.83 16 41 H 0.07 1.25 7.18 -51.93 -0.37 0.87 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.17 7.17 -51.93 -0.37 0.80 16 45 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 46 H 0.01 0.29 7.12 -51.93 -0.37 -0.08 16 47 H 0.12 3.27 5.45 -51.93 -0.28 2.98 16 48 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 49 H 0.02 0.57 7.13 -51.93 -0.37 0.20 16 50 H 0.05 1.16 6.73 -51.93 -0.35 0.82 16 51 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 52 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 404.29 15.07 6.09 6.09 Total: -1.00 -32.52 404.29 -11.55 -44.07 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -8.66 Total: 6.47 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -3.78 Total: -10.25 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.26 Total: -53.41 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.52 -11.55 -44.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099053592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.310 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds