Wall clock time and date at job start Wed Apr 1 2020 03:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38236 * 119.99994 * 269.73222 * 3 2 1 5 5 C 1.38240 * 119.99507 * 179.74413 * 4 3 2 6 6 C 1.38237 * 120.00097 * 0.52303 * 5 4 3 7 7 C 1.50696 * 119.99818 * 179.76963 * 6 5 4 8 8 C 1.50705 * 109.46997 * 269.97915 * 7 6 5 9 9 O 1.21272 * 120.00185 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99800 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00095 * 179.97438 * 10 8 7 12 12 C 1.54178 * 111.61216 * 298.58870 * 11 10 8 13 13 C 1.56230 * 103.64842 * 260.32462 * 12 11 10 14 14 C 1.54854 * 103.17322 * 322.66048 * 13 12 11 15 15 C 1.54184 * 104.30053 * 37.76988 * 14 13 12 16 16 H 1.08998 * 112.25376 * 98.78411 * 15 14 13 17 17 C 1.53800 * 109.12491 * 223.08122 * 15 14 13 18 18 N 1.47223 * 106.35585 * 132.66803 * 17 15 14 19 19 C 1.36940 * 126.70025 * 148.74524 * 18 17 15 20 20 H 1.07995 * 119.99985 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99776 * 0.02705 * 19 18 17 22 22 N 1.31617 * 119.99990 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99944 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47212 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47337 * 119.99799 * 23 21 19 26 26 H 1.48502 * 109.46972 * 239.99741 * 23 21 19 27 27 C 1.47219 * 106.60053 * 328.76634 * 18 17 15 28 28 C 1.38230 * 119.99957 * 359.75360 * 6 5 4 29 29 C 1.38235 * 120.00199 * 359.96975 * 28 6 5 30 30 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 34 34 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 35 35 H 1.07997 * 120.00153 * 359.97438 * 4 3 2 36 36 H 1.07999 * 119.99660 * 180.29285 * 5 4 3 37 37 H 1.09003 * 109.47220 * 29.97913 * 7 6 5 38 38 H 1.08994 * 109.47107 * 149.98175 * 7 6 5 39 39 H 0.97008 * 120.00018 * 0.02562 * 10 8 7 40 40 H 1.08995 * 110.46943 * 20.29502 * 12 11 10 41 41 H 1.09004 * 110.46752 * 142.88644 * 12 11 10 42 42 H 1.09001 * 110.86721 * 204.05548 * 13 12 11 43 43 H 1.08996 * 110.38774 * 81.04117 * 13 12 11 44 44 H 1.08997 * 110.46878 * 279.06092 * 14 13 12 45 45 H 1.09008 * 110.46484 * 156.46764 * 14 13 12 46 46 H 1.09003 * 110.07493 * 13.44832 * 17 15 14 47 47 H 1.09001 * 110.07641 * 251.88996 * 17 15 14 48 48 H 0.97002 * 120.00084 * 180.02562 * 22 21 19 49 49 H 1.09000 * 110.07961 * 272.01236 * 27 18 17 50 50 H 1.08993 * 110.12961 * 150.48571 * 27 18 17 51 51 H 1.08001 * 120.00304 * 180.02562 * 28 6 5 52 52 H 1.07998 * 120.00589 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2680 2.0706 -1.1971 5 6 2.7238 3.3757 -1.1971 6 6 2.9542 4.0273 0.0001 7 6 3.4560 5.4483 0.0002 8 6 4.9630 5.4488 0.0004 9 8 5.5698 4.3988 0.0000 10 7 5.6365 6.6163 -0.0001 11 6 7.1015 6.6168 0.0007 12 6 7.6690 5.9321 1.2601 13 6 8.0410 7.1280 2.1940 14 6 8.5786 8.1928 1.2066 15 6 7.6729 8.0541 -0.0334 16 1 6.8807 8.8025 -0.0518 17 6 8.5414 8.1166 -1.3012 18 7 8.1102 6.9972 -2.1547 19 6 8.1175 6.9618 -3.5236 20 1 7.7746 6.0790 -4.0428 21 6 8.5655 8.0606 -4.2440 22 7 8.9828 9.1366 -3.6112 23 14 8.5747 8.0126 -6.1113 24 1 8.0599 6.6992 -6.5753 25 1 7.7095 9.0982 -6.6387 26 1 9.9626 8.2020 -6.6045 27 6 7.6693 5.9234 -1.2492 28 6 2.7240 3.3756 1.1972 29 6 2.2627 2.0725 1.1972 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.0926 1.5600 -2.1324 36 1 2.9034 3.8850 -2.1323 37 1 3.0926 5.9620 -0.8899 38 1 3.0924 5.9620 0.8900 39 1 5.1511 7.4562 -0.0002 40 1 6.9190 5.2827 1.7116 41 1 8.5668 5.3651 1.0139 42 1 8.8125 6.8381 2.9074 43 1 7.1552 7.4944 2.7128 44 1 9.6159 7.9822 0.9465 45 1 8.4873 9.1909 1.6355 46 1 9.5936 8.0042 -1.0399 47 1 8.3824 9.0635 -1.8173 48 1 9.2956 9.9045 -4.1146 49 1 8.5158 5.2935 -0.9756 50 1 6.8959 5.3230 -1.7279 51 1 2.9035 3.8848 2.1326 52 1 2.0824 1.5634 2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099053592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:09 Heat of formation + Delta-G solvation = -17.404967 kcal Electronic energy + Delta-G solvation = -30344.507005 eV Core-core repulsion = 26500.787452 eV Total energy + Delta-G solvation = -3843.719553 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.65115 -40.46635 -39.24284 -36.31510 -35.48410 -34.62946 -33.40895 -32.23405 -31.78881 -30.92287 -29.56952 -27.98358 -26.33326 -26.17515 -24.23319 -23.62444 -22.84142 -21.88891 -21.50778 -20.60754 -20.22520 -19.03088 -17.84440 -17.31518 -17.00058 -16.82200 -16.71880 -16.13134 -16.03504 -15.57884 -15.48193 -15.16046 -14.99491 -14.60818 -14.53737 -14.30558 -14.17075 -13.95727 -13.71754 -13.43179 -13.20145 -13.13444 -12.97768 -12.82379 -12.72750 -12.54659 -12.42170 -12.25304 -12.05470 -12.03230 -11.83877 -11.78083 -11.69298 -11.65009 -11.64195 -11.41919 -11.24006 -10.81370 -10.69001 -9.93209 -9.77408 -9.38743 -8.93184 -7.77789 -5.26291 0.42088 0.54919 1.43436 1.44411 1.54876 1.76873 2.28980 2.45999 2.92399 3.27661 3.47175 3.57955 3.72599 3.86063 3.90687 3.95762 4.01426 4.12893 4.16516 4.21940 4.37363 4.44206 4.48103 4.50143 4.51987 4.59957 4.61296 4.62692 4.74472 4.75188 4.79001 4.82034 4.89096 4.96898 5.06029 5.06243 5.08962 5.13321 5.19720 5.23246 5.24460 5.29398 5.39007 5.40561 5.50133 5.53824 5.59665 5.71405 5.75118 5.76324 5.82291 6.15974 6.34557 6.71214 7.08600 7.41051 7.72988 8.40985 9.20124 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.002946 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.984540 B = 9500.747680 C =11360.349282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.131 4.131 5 C -0.122 4.122 6 C -0.080 4.080 7 C -0.095 4.095 8 C 0.510 3.490 9 O -0.571 6.571 10 N -0.702 5.702 11 C 0.173 3.827 12 C -0.113 4.113 13 C -0.107 4.107 14 C -0.109 4.109 15 C -0.101 4.101 16 H 0.091 0.909 17 C 0.142 3.858 18 N -0.617 5.617 19 C -0.237 4.237 20 H 0.068 0.932 21 C -0.061 4.061 22 N -0.942 5.942 23 Si 0.979 3.021 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.290 1.290 27 C 0.138 3.862 28 C -0.112 4.112 29 C -0.126 4.126 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.133 0.867 39 H 0.411 0.589 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.088 0.912 46 H -0.013 1.013 47 H 0.094 0.906 48 H 0.250 0.750 49 H 0.006 0.994 50 H 0.025 0.975 51 H 0.135 0.865 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.547 -8.439 14.452 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.149 4.149 5 C -0.140 4.140 6 C -0.080 4.080 7 C -0.134 4.134 8 C 0.298 3.702 9 O -0.450 6.450 10 N -0.353 5.353 11 C 0.085 3.915 12 C -0.152 4.152 13 C -0.144 4.144 14 C -0.147 4.147 15 C -0.121 4.121 16 H 0.109 0.891 17 C 0.017 3.983 18 N -0.342 5.342 19 C -0.366 4.366 20 H 0.086 0.914 21 C -0.253 4.253 22 N -0.592 5.592 23 Si 0.807 3.193 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.217 1.217 27 C 0.011 3.989 28 C -0.129 4.129 29 C -0.144 4.144 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.146 0.854 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.151 0.849 39 H 0.247 0.753 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.073 0.927 45 H 0.107 0.893 46 H 0.005 0.995 47 H 0.112 0.888 48 H 0.060 0.940 49 H 0.024 0.976 50 H 0.044 0.956 51 H 0.153 0.847 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.064 -9.075 14.231 23.301 hybrid contribution 0.468 0.313 -1.627 1.721 sum -15.595 -8.763 12.604 21.883 Atomic orbital electron populations 1.21715 0.93810 1.02416 1.01970 1.20583 0.96868 0.91373 1.03332 1.20179 0.98836 0.97211 0.92990 1.21180 1.00559 0.94697 0.98476 1.21167 0.99440 0.95645 0.97789 1.19444 0.99360 0.95497 0.93733 1.20714 0.89905 0.95573 1.07244 1.21060 0.90822 0.83242 0.75084 1.90696 1.71195 1.32645 1.50415 1.45922 1.05779 1.09012 1.74596 1.21449 0.79953 0.95891 0.94224 1.22803 0.99799 0.97830 0.94755 1.22698 1.01436 0.93683 0.96620 1.22391 0.98033 1.00385 0.93861 1.22871 0.98442 0.94262 0.96570 0.89069 1.21930 0.92615 0.94714 0.89023 1.44855 1.74657 1.13408 1.01232 1.19371 1.36104 0.99637 0.81472 0.91423 1.25542 1.01316 0.96003 1.02460 1.69853 1.50013 1.05254 1.34062 0.85001 0.77067 0.77467 0.79718 1.19924 1.21087 1.21695 1.21730 0.95187 0.90800 0.91211 1.21202 0.98753 0.95354 0.97638 1.21245 1.00088 0.94807 0.98273 0.92522 0.93081 0.91094 0.90940 0.90242 0.85373 0.86712 0.86855 0.84859 0.75273 0.91206 0.92871 0.90136 0.89814 0.92702 0.89317 0.99490 0.88801 0.94014 0.97619 0.95642 0.84748 0.84298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.89 71.98 0.71 -1.11 16 2 C -0.08 -1.31 6.07 29.85 0.18 -1.13 16 3 C -0.09 -1.95 5.13 -19.86 -0.10 -2.06 16 4 C -0.13 -3.12 9.70 22.27 0.22 -2.90 16 5 C -0.12 -3.21 9.70 22.27 0.22 -2.99 16 6 C -0.08 -1.98 4.37 -19.87 -0.09 -2.06 16 7 C -0.09 -2.04 5.83 29.10 0.17 -1.87 16 8 C 0.51 15.57 6.80 87.66 0.60 16.16 16 9 O -0.57 -22.36 13.53 -3.01 -0.04 -22.40 16 10 N -0.70 -20.92 5.23 -417.29 -2.18 -23.10 16 11 C 0.17 6.21 0.94 4.85 0.00 6.21 16 12 C -0.11 -3.61 5.75 32.12 0.18 -3.42 16 13 C -0.11 -2.62 6.92 32.35 0.22 -2.39 16 14 C -0.11 -3.13 6.38 31.63 0.20 -2.93 16 15 C -0.10 -3.63 3.67 -9.54 -0.03 -3.66 16 16 H 0.09 2.96 7.69 -2.39 -0.02 2.94 16 17 C 0.14 7.00 5.77 86.51 0.50 7.50 16 18 N -0.62 -33.41 3.39 -695.23 -2.36 -35.77 16 19 C -0.24 -13.91 10.34 84.03 0.87 -13.04 16 20 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 21 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 22 N -0.94 -55.62 10.08 21.65 0.22 -55.40 16 23 Si 0.98 46.46 29.55 68.60 2.03 48.49 16 24 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 C 0.14 6.53 6.00 86.51 0.52 7.05 16 28 C -0.11 -2.49 9.70 22.27 0.22 -2.27 16 29 C -0.13 -2.62 9.70 22.27 0.22 -2.41 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 1.09 8.08 -2.39 -0.02 1.08 16 34 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 35 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.11 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.11 2.16 8.09 -2.39 -0.02 2.14 16 38 H 0.13 1.91 8.08 -2.39 -0.02 1.89 16 39 H 0.41 9.77 8.28 -92.70 -0.77 9.00 16 40 H 0.07 2.25 6.70 -2.39 -0.02 2.23 16 41 H 0.05 1.87 7.18 -2.39 -0.02 1.86 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.05 1.77 7.17 -2.39 -0.02 1.75 16 45 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 46 H -0.01 -0.67 7.12 -2.39 -0.02 -0.69 16 47 H 0.09 5.19 5.45 -2.39 -0.01 5.18 16 48 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 49 H 0.01 0.31 7.13 -2.39 -0.02 0.29 16 50 H 0.03 1.29 6.73 -2.39 -0.02 1.28 16 51 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 52 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -73.89 404.29 3.07 -70.82 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.14 Total: 27.70 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 5.27 Total: -10.34 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -4.32 Total: -114.27 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.04 Total: -22.40 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -73.89 3.07 -70.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099053592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.412 kcal (2) G-P(sol) polarization free energy of solvation -73.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds