Wall clock time and date at job start Wed Apr 1 2020 02:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.49643 * 2 1 4 4 C 1.53044 * 109.49694 * 120.06496 * 2 1 3 5 5 C 1.53042 * 109.53342 * 181.31758 * 4 2 1 6 6 C 1.53183 * 109.31220 * 298.63045 * 5 4 2 7 7 H 1.09002 * 109.59229 * 294.85074 * 6 5 4 8 8 C 1.53000 * 109.70569 * 174.49556 * 6 5 4 9 9 N 1.46500 * 109.47569 * 180.43434 * 8 6 5 10 10 C 1.34778 * 120.00318 * 179.97438 * 9 8 6 11 11 O 1.21286 * 119.99400 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99992 * 180.02562 * 10 9 8 13 13 F 1.39895 * 109.54182 * 59.82501 * 12 10 9 14 14 C 1.53175 * 109.54621 * 299.55490 * 12 10 9 15 15 C 1.53089 * 109.16383 * 183.15422 * 14 12 10 16 16 O 1.42904 * 109.41613 * 57.61049 * 15 14 12 17 17 C 1.42903 * 114.09403 * 298.84131 * 16 15 14 18 18 C 1.53090 * 109.41511 * 61.15931 * 17 16 15 19 19 N 1.46928 * 108.77976 * 54.64111 * 6 5 4 20 20 C 1.36930 * 120.63399 * 126.36671 * 19 6 5 21 21 H 1.07994 * 119.99945 * 328.77970 * 20 19 6 22 22 C 1.38809 * 119.99822 * 148.78852 * 20 19 6 23 23 N 1.31618 * 120.00317 * 347.84360 * 22 20 19 24 24 Si 1.86807 * 119.99920 * 167.85000 * 22 20 19 25 25 H 1.48492 * 109.46977 * 269.99487 * 24 22 20 26 26 H 1.48499 * 109.46889 * 29.99679 * 24 22 20 27 27 H 1.48503 * 109.47064 * 149.99400 * 24 22 20 28 28 C 1.46934 * 118.73050 * 306.64290 * 19 6 5 29 29 H 1.09005 * 109.47419 * 299.93625 * 1 2 3 30 30 H 1.08996 * 109.47806 * 59.93717 * 1 2 3 31 31 H 1.09004 * 109.47354 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47068 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46852 * 300.06237 * 3 2 1 34 34 H 1.08996 * 109.47559 * 60.06172 * 3 2 1 35 35 H 1.08993 * 109.46018 * 61.29612 * 4 2 1 36 36 H 1.09005 * 109.44672 * 301.32482 * 4 2 1 37 37 H 1.09004 * 109.49166 * 178.68166 * 5 4 2 38 38 H 1.08996 * 109.52873 * 58.59950 * 5 4 2 39 39 H 1.09002 * 109.47119 * 300.43813 * 8 6 5 40 40 H 1.08998 * 109.47150 * 60.43142 * 8 6 5 41 41 H 0.97002 * 119.99857 * 0.02562 * 9 8 6 42 42 H 1.09007 * 109.51899 * 303.06260 * 14 12 10 43 43 H 1.09001 * 109.51725 * 63.24363 * 14 12 10 44 44 H 1.09004 * 109.47720 * 297.62710 * 15 14 12 45 45 H 1.08998 * 109.48843 * 177.59916 * 15 14 12 46 46 H 1.09001 * 109.48143 * 301.17208 * 17 16 15 47 47 H 1.09000 * 109.48517 * 181.14671 * 17 16 15 48 48 H 1.09004 * 109.52036 * 182.48320 * 18 17 16 49 49 H 1.09002 * 109.57698 * 62.32865 * 18 17 16 50 50 H 0.97005 * 120.00277 * 180.02562 * 23 22 20 51 51 H 1.09006 * 109.58205 * 173.14009 * 28 19 6 52 52 H 1.08995 * 109.58617 * 293.56265 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0408 -0.7228 1.2486 5 6 3.5708 -0.6946 1.2661 6 6 4.1052 -1.4267 0.0312 7 1 3.8375 -2.4818 0.0875 8 6 5.6274 -1.2866 -0.0331 9 7 6.1319 -1.9795 -1.2212 10 6 7.4536 -1.9892 -1.4853 11 8 8.2252 -1.4246 -0.7390 12 6 7.9724 -2.7015 -2.7078 13 9 7.4007 -2.1399 -3.8545 14 6 7.6100 -4.1876 -2.6274 15 6 8.2084 -4.9167 -3.8332 16 8 9.6238 -4.7207 -3.8524 17 6 10.0219 -3.3537 -3.9741 18 6 9.4964 -2.5618 -2.7740 19 7 3.5046 -0.8295 -1.1694 20 6 4.2935 -0.3792 -2.1940 21 1 5.2775 0.0139 -1.9852 22 6 3.8285 -0.4279 -3.5009 23 7 2.7443 -1.1164 -3.7885 24 14 4.7416 0.4838 -4.8518 25 1 4.1997 1.8609 -4.9732 26 1 6.1867 0.5482 -4.5159 27 1 4.5644 -0.2333 -6.1401 28 6 2.0415 -0.7191 -1.2469 29 1 -0.3634 0.5129 0.8906 30 1 -0.3634 0.5148 -0.8893 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1306 1.4418 -0.0005 33 1 1.6766 1.9566 -0.8895 34 1 1.6785 1.9560 0.8905 35 1 1.6967 -1.7569 1.2358 36 1 1.6582 -0.2236 2.1389 37 1 3.9334 -1.1890 2.1674 38 1 3.9164 0.3391 1.2542 39 1 5.8931 -0.2308 -0.0879 40 1 6.0709 -1.7268 0.8600 41 1 5.5147 -2.4306 -1.8182 42 1 8.0137 -4.6117 -1.7080 43 1 6.5257 -4.2990 -2.6356 44 1 7.7740 -4.5193 -4.7506 45 1 7.9899 -5.9820 -3.7592 46 1 9.6112 -2.9360 -4.8934 47 1 11.1099 -3.2929 -4.0015 48 1 9.7612 -1.5105 -2.8871 49 1 9.9381 -2.9521 -1.8571 50 1 2.4195 -1.1507 -4.7020 51 1 1.7645 -0.1503 -2.1345 52 1 1.6020 -1.7153 -1.2970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099103072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:56 Heat of formation + Delta-G solvation = -136.532646 kcal Electronic energy + Delta-G solvation = -33365.365284 eV Core-core repulsion = 29085.710742 eV Total energy + Delta-G solvation = -4279.654542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -49.06773 -41.06671 -40.17273 -39.48590 -36.73053 -35.04284 -34.33021 -33.61370 -32.26103 -31.74315 -29.19888 -28.02110 -27.33573 -26.92930 -24.99691 -24.62993 -23.82635 -22.14110 -21.74329 -20.88022 -19.48650 -19.11185 -17.98793 -17.74076 -17.43301 -17.08488 -16.96302 -16.42054 -16.20456 -16.02705 -15.78478 -15.58938 -15.47152 -15.19951 -15.01018 -14.71574 -14.59877 -13.98755 -13.82647 -13.76736 -13.62349 -13.57041 -13.42394 -13.13806 -13.00921 -12.84556 -12.75521 -12.52495 -12.51951 -12.49059 -12.23688 -12.13191 -11.87698 -11.81964 -11.66689 -11.60057 -11.26383 -11.07862 -10.94414 -10.89102 -10.54023 -10.46094 -9.95066 -8.51106 -7.82189 -5.28269 1.34079 1.40746 1.43243 1.49195 2.08897 2.49140 2.82764 3.16992 3.23963 3.32698 3.49606 3.62177 3.64424 3.79850 3.97209 4.04301 4.14346 4.20663 4.26525 4.31349 4.40511 4.44030 4.51290 4.55219 4.58150 4.66489 4.68314 4.72743 4.85417 4.86774 4.91219 4.92713 4.95207 5.05640 5.05826 5.09832 5.14067 5.16111 5.25939 5.40282 5.43415 5.51719 5.57071 5.63245 5.72237 5.82692 5.90545 6.08442 6.45552 6.51220 7.08445 7.22550 7.91200 8.43457 9.21164 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.004156 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.678112 B = 6735.190188 C = 7690.138433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 C -0.118 4.118 4 C -0.091 4.091 5 C -0.124 4.124 6 C 0.160 3.840 7 H 0.034 0.966 8 C 0.136 3.864 9 N -0.680 5.680 10 C 0.491 3.509 11 O -0.571 6.571 12 C 0.100 3.900 13 F -0.203 7.203 14 C -0.168 4.168 15 C 0.062 3.938 16 O -0.387 6.387 17 C 0.062 3.938 18 C -0.154 4.154 19 N -0.595 5.595 20 C -0.227 4.227 21 H 0.056 0.944 22 C -0.022 4.022 23 N -0.919 5.919 24 Si 0.926 3.074 25 H -0.295 1.295 26 H -0.281 1.281 27 H -0.296 1.296 28 C 0.197 3.803 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.027 0.973 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.413 0.587 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.130 0.870 46 H 0.053 0.947 47 H 0.129 0.871 48 H 0.081 0.919 49 H 0.101 0.899 50 H 0.246 0.754 51 H 0.048 0.952 52 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.003 -5.846 6.499 10.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.094 4.094 3 C -0.175 4.175 4 C -0.128 4.128 5 C -0.163 4.163 6 C 0.054 3.946 7 H 0.051 0.949 8 C 0.013 3.987 9 N -0.329 5.329 10 C 0.275 3.725 11 O -0.452 6.452 12 C 0.078 3.922 13 F -0.183 7.183 14 C -0.206 4.206 15 C -0.014 4.014 16 O -0.305 6.305 17 C -0.014 4.014 18 C -0.192 4.192 19 N -0.319 5.319 20 C -0.358 4.358 21 H 0.073 0.927 22 C -0.219 4.219 23 N -0.566 5.566 24 Si 0.757 3.243 25 H -0.223 1.223 26 H -0.207 1.207 27 H -0.223 1.223 28 C 0.072 3.928 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.250 0.750 42 H 0.125 0.875 43 H 0.111 0.889 44 H 0.071 0.929 45 H 0.148 0.852 46 H 0.071 0.929 47 H 0.146 0.854 48 H 0.100 0.900 49 H 0.119 0.881 50 H 0.056 0.944 51 H 0.067 0.933 52 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 5.570 -5.616 6.855 10.467 hybrid contribution -0.399 1.017 -1.725 2.042 sum 5.171 -4.599 5.130 8.614 Atomic orbital electron populations 1.21705 0.94246 1.01349 1.01311 1.21082 0.95324 0.95933 0.97043 1.21628 1.00736 0.95342 0.99773 1.21385 0.94814 0.99826 0.96790 1.21949 0.96452 1.00811 0.97131 1.20889 0.89868 0.95437 0.88400 0.94868 1.21360 0.94188 0.96342 0.86834 1.46069 1.06611 1.52983 1.27192 1.20980 0.83138 0.81090 0.87276 1.90635 1.57081 1.46502 1.51002 1.21374 0.95544 0.95067 0.80192 1.92923 1.86670 1.87061 1.51695 1.22803 1.03836 0.90854 1.03087 1.22685 0.80656 1.02378 0.95728 1.87913 1.22598 1.25714 1.94301 1.22711 1.02024 0.81255 0.95435 1.22553 0.90882 1.03183 1.02603 1.44153 1.01864 1.69773 1.16083 1.19041 0.98923 1.32501 0.85295 0.92685 1.25322 0.98561 0.99761 0.98291 1.70074 1.25267 1.43050 1.18179 0.85898 0.79020 0.78481 0.80895 1.22304 1.20674 1.22258 1.20492 0.82459 0.95201 0.94698 0.91320 0.94109 0.92993 0.93576 0.95391 0.92194 0.92633 0.90838 0.90076 0.92237 0.93620 0.90297 0.75007 0.87533 0.88874 0.92910 0.85210 0.92899 0.85357 0.90041 0.88094 0.94420 0.93336 0.98731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 8.48 71.98 0.61 -3.12 16 2 C -0.09 -3.10 0.77 -52.25 -0.04 -3.14 16 3 C -0.12 -3.99 7.98 71.98 0.57 -3.42 16 4 C -0.09 -2.57 4.71 30.62 0.14 -2.42 16 5 C -0.12 -3.64 5.03 30.67 0.15 -3.48 16 6 C 0.16 5.71 3.01 44.97 0.14 5.84 16 7 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 8 C 0.14 4.87 4.44 86.38 0.38 5.25 16 9 N -0.68 -25.42 3.76 -463.05 -1.74 -27.16 16 10 C 0.49 18.28 6.88 87.66 0.60 18.88 16 11 O -0.57 -23.55 15.97 -3.05 -0.05 -23.60 16 12 C 0.10 3.19 1.07 -11.42 -0.01 3.18 16 13 F -0.20 -7.80 16.07 44.97 0.72 -7.08 16 14 C -0.17 -4.24 5.08 30.68 0.16 -4.08 16 15 C 0.06 1.39 6.72 72.01 0.48 1.88 16 16 O -0.39 -9.32 10.77 -148.98 -1.60 -10.92 16 17 C 0.06 1.43 6.72 72.01 0.48 1.91 16 18 C -0.15 -4.23 4.52 30.68 0.14 -4.09 16 19 N -0.59 -26.00 2.42 -676.06 -1.64 -27.63 16 20 C -0.23 -11.24 6.97 84.03 0.59 -10.66 16 21 H 0.06 2.87 5.86 -2.91 -0.02 2.86 16 22 C -0.02 -1.18 5.01 84.86 0.43 -0.76 16 23 N -0.92 -50.61 11.15 21.65 0.24 -50.37 16 24 Si 0.93 45.44 29.57 68.60 2.03 47.46 16 25 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 26 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 28 C 0.20 8.58 3.90 86.22 0.34 8.92 16 29 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.05 1.73 5.97 -2.39 -0.01 1.72 16 33 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.85 6.34 -2.39 -0.02 1.84 16 39 H 0.05 1.84 7.41 -2.39 -0.02 1.82 16 40 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.41 16.39 6.91 -92.71 -0.64 15.75 16 42 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 43 H 0.09 2.38 7.70 -2.39 -0.02 2.36 16 44 H 0.05 1.28 7.93 -2.39 -0.02 1.26 16 45 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.05 1.27 7.93 -2.39 -0.02 1.25 16 47 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 49 H 0.10 2.65 8.02 -2.39 -0.02 2.63 16 50 H 0.25 13.53 8.31 -92.70 -0.77 12.76 16 51 H 0.05 2.49 6.16 -2.38 -0.01 2.48 16 52 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16 Total: -1.00 -61.80 393.00 3.39 -58.41 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.26 Total: 30.19 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 5.16 Total: 10.70 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -3.14 Total: -105.16 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -1.65 Total: -34.52 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 0.72 Total: -7.08 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -61.80 3.39 -58.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099103072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.122 kcal (2) G-P(sol) polarization free energy of solvation -61.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds