Wall clock time and date at job start Wed Apr 1 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 115.54972 * 2 1 4 4 C 1.53004 * 117.49714 * 214.29794 * 2 1 3 5 5 C 1.52999 * 117.50099 * 145.67600 * 2 1 3 6 6 H 1.09003 * 117.49869 * 359.96637 * 5 2 1 7 7 C 1.50699 * 117.49864 * 214.97805 * 5 2 1 8 8 O 1.21284 * 119.99617 * 359.97438 * 7 5 2 9 9 N 1.34771 * 120.00341 * 179.97438 * 7 5 2 10 10 C 1.46501 * 120.00046 * 179.97438 * 9 7 5 11 11 H 1.08996 * 112.85248 * 23.81127 * 10 9 7 12 12 C 1.53783 * 113.61042 * 155.00519 * 10 9 7 13 13 C 1.53783 * 87.08226 * 139.98156 * 12 10 9 14 14 C 1.52999 * 113.61315 * 89.11240 * 13 12 10 15 15 N 1.46493 * 109.47132 * 65.20604 * 14 13 12 16 16 C 1.36942 * 120.00010 * 175.03223 * 15 14 13 17 17 H 1.07994 * 120.00031 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00249 * 180.02562 * 16 15 14 19 19 N 1.31616 * 119.99875 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00238 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47152 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46846 * 239.99656 * 20 18 16 23 23 H 1.48500 * 109.47525 * 119.99647 * 20 18 16 24 24 C 1.50694 * 113.61218 * 219.93311 * 13 12 10 25 25 C 1.38230 * 120.00337 * 342.31433 * 24 13 12 26 26 C 1.38241 * 120.00113 * 179.74961 * 25 24 13 27 27 C 1.38231 * 119.99616 * 0.52120 * 26 25 24 28 28 C 1.38239 * 120.00325 * 359.75353 * 27 26 25 29 29 C 1.38230 * 119.99567 * 359.97438 * 28 27 26 30 30 C 1.53783 * 87.08030 * 334.56698 * 13 12 10 31 31 H 1.09004 * 109.46663 * 274.33011 * 1 2 3 32 32 H 1.08996 * 109.47632 * 34.32730 * 1 2 3 33 33 H 1.08997 * 109.47273 * 154.33168 * 1 2 3 34 34 H 1.08997 * 109.46860 * 205.67412 * 3 2 1 35 35 H 1.09004 * 109.46909 * 325.67236 * 3 2 1 36 36 H 1.08994 * 109.47322 * 85.67077 * 3 2 1 37 37 H 1.09000 * 117.50092 * 145.01818 * 4 2 1 38 38 H 1.08997 * 117.49622 * 359.97438 * 4 2 1 39 39 H 0.97002 * 120.00075 * 0.02562 * 9 7 5 40 40 H 1.08994 * 113.61783 * 25.43109 * 12 10 9 41 41 H 1.09007 * 113.68466 * 254.53940 * 12 10 9 42 42 H 1.08999 * 109.47332 * 305.20431 * 14 13 12 43 43 H 1.08998 * 109.46940 * 185.20442 * 14 13 12 44 44 H 0.97000 * 120.00209 * 355.03218 * 15 14 13 45 45 H 0.97002 * 120.00287 * 0.02562 * 19 18 16 46 46 H 1.08004 * 120.00255 * 359.97438 * 25 24 13 47 47 H 1.08002 * 120.00031 * 180.29783 * 26 25 24 48 48 H 1.07999 * 119.99798 * 179.76938 * 27 26 25 49 49 H 1.07994 * 120.00189 * 179.97438 * 28 27 26 50 50 H 1.08008 * 119.99407 * 180.02562 * 29 28 27 51 51 H 1.09000 * 113.61645 * 139.97952 * 30 13 12 52 52 H 1.08999 * 113.60907 * 270.88802 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1212 -0.7648 5 6 2.2365 -1.1208 0.7652 6 1 1.6113 -1.8579 1.2692 7 6 3.5293 -0.7807 1.4609 8 8 3.9720 0.3468 1.4006 9 7 4.1936 -1.7295 2.1501 10 6 5.4507 -1.3989 2.8259 11 1 5.5401 -0.3378 3.0582 12 6 5.7708 -2.3191 4.0158 13 6 7.2346 -2.2871 3.5455 14 6 8.0466 -1.1384 4.1472 15 7 8.1637 -1.3290 5.5949 16 6 8.9365 -0.4766 6.3375 17 1 9.4600 0.3360 5.8558 18 6 9.0480 -0.6575 7.7092 19 7 8.4106 -1.6481 8.2963 20 14 10.1016 0.5057 8.7222 21 1 10.7075 1.5278 7.8313 22 1 11.1783 -0.2626 9.3974 23 1 9.2573 1.1764 9.7432 24 6 7.9331 -3.6179 3.6554 25 6 7.4063 -4.6107 4.4602 26 6 8.0444 -5.8332 4.5569 27 6 9.2149 -6.0591 3.8572 28 6 9.7448 -5.0643 3.0568 29 6 9.1037 -3.8439 2.9558 30 6 6.6935 -1.9876 2.1376 31 1 -0.3633 0.0776 1.0248 32 1 -0.3634 0.8486 -0.5795 33 1 -0.3634 -0.9262 -0.4451 34 1 3.1822 1.3087 -0.4452 35 1 1.5809 2.0742 -0.5796 36 1 2.2766 1.7417 1.0247 37 1 3.1715 -0.8755 -1.2682 38 1 1.6111 -1.8590 -1.2675 39 1 3.8397 -2.6314 2.1980 40 1 5.3100 -3.3042 3.9423 41 1 5.6138 -1.8497 4.9870 42 1 7.5435 -0.1928 3.9448 43 1 9.0409 -1.1237 3.7010 44 1 7.6939 -2.0591 6.0276 45 1 7.8631 -2.2520 7.7704 46 1 6.4943 -4.4325 5.0106 47 1 7.6302 -6.6105 5.1819 48 1 9.7154 -7.0129 3.9357 49 1 10.6595 -5.2407 2.5105 50 1 9.5175 -3.0668 2.3301 51 1 7.2811 -1.2494 1.5918 52 1 6.4849 -2.8821 1.5507 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105418525.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:21 Heat of formation + Delta-G solvation = 40.520111 kcal Electronic energy + Delta-G solvation = -29949.506783 eV Core-core repulsion = 26108.299049 eV Total energy + Delta-G solvation = -3841.207734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.78454 -39.91662 -38.09551 -37.03313 -34.73424 -33.53132 -30.94449 -30.65402 -30.35534 -29.58507 -27.63940 -26.43265 -25.72357 -24.62519 -23.33968 -22.52756 -21.95679 -21.24573 -20.53947 -19.38012 -18.33462 -17.25224 -17.22665 -16.99611 -15.90612 -15.28225 -15.25863 -14.86495 -14.58786 -14.42290 -14.31965 -13.86447 -13.75515 -13.58520 -13.45106 -13.30172 -13.19420 -12.98710 -12.73466 -12.71062 -12.28646 -12.18706 -12.14878 -12.02903 -11.79605 -11.45827 -11.23817 -11.02124 -10.78792 -10.68432 -10.54272 -10.45980 -10.21880 -10.09694 -10.04750 -9.98336 -9.50607 -9.15098 -8.98940 -8.82477 -8.62436 -8.35244 -6.93617 -6.05382 -3.03893 1.66224 1.69189 2.41806 3.06675 3.52014 3.54756 3.61389 3.70841 4.05837 4.36714 4.42305 4.50793 4.56624 4.62559 4.76321 4.83701 4.89030 4.91043 4.92450 5.20102 5.26364 5.26405 5.29812 5.38074 5.38531 5.41293 5.63915 5.65998 5.67637 5.71485 5.75025 5.77881 5.80861 5.84867 5.85019 5.88535 5.98913 6.00090 6.06851 6.18627 6.23325 6.30979 6.34844 6.40939 6.60626 6.62061 6.66225 6.76639 6.83072 6.95167 7.28898 7.49162 7.86841 8.22127 8.81582 9.28692 10.15093 10.30621 11.43494 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009604 B = 0.002967 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.753951 B = 9436.424051 C =11527.177186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.094 4.094 3 C -0.104 4.104 4 C -0.148 4.148 5 C -0.190 4.190 6 H 0.121 0.879 7 C 0.541 3.459 8 O -0.533 6.533 9 N -0.715 5.715 10 C 0.126 3.874 11 H 0.119 0.881 12 C -0.136 4.136 13 C -0.046 4.046 14 C 0.185 3.815 15 N -0.736 5.736 16 C -0.328 4.328 17 H 0.064 0.936 18 C -0.045 4.045 19 N -0.945 5.945 20 Si 1.084 2.916 21 H -0.295 1.295 22 H -0.294 1.294 23 H -0.293 1.293 24 C -0.041 4.041 25 C -0.113 4.113 26 C -0.119 4.119 27 C -0.131 4.131 28 C -0.121 4.121 29 C -0.109 4.109 30 C -0.132 4.132 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.398 0.602 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.023 0.977 43 H 0.027 0.973 44 H 0.368 0.632 45 H 0.255 0.745 46 H 0.120 0.880 47 H 0.117 0.883 48 H 0.115 0.885 49 H 0.116 0.884 50 H 0.117 0.883 51 H 0.073 0.927 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.497 -6.037 -18.730 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.161 4.161 4 C -0.185 4.185 5 C -0.211 4.211 6 H 0.138 0.862 7 C 0.327 3.673 8 O -0.410 6.410 9 N -0.364 5.364 10 C 0.022 3.978 11 H 0.136 0.864 12 C -0.175 4.175 13 C -0.047 4.047 14 C 0.057 3.943 15 N -0.382 5.382 16 C -0.459 4.459 17 H 0.082 0.918 18 C -0.243 4.243 19 N -0.591 5.591 20 Si 0.915 3.085 21 H -0.222 1.222 22 H -0.221 1.221 23 H -0.221 1.221 24 C -0.041 4.041 25 C -0.131 4.131 26 C -0.137 4.137 27 C -0.149 4.149 28 C -0.139 4.139 29 C -0.128 4.128 30 C -0.171 4.171 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.232 0.768 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.041 0.959 43 H 0.044 0.956 44 H 0.201 0.799 45 H 0.066 0.934 46 H 0.138 0.862 47 H 0.135 0.865 48 H 0.133 0.867 49 H 0.134 0.866 50 H 0.135 0.865 51 H 0.092 0.908 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.506 -4.653 -17.338 21.323 hybrid contribution -0.643 -1.266 -1.194 1.856 sum -12.150 -5.919 -18.533 22.937 Atomic orbital electron populations 1.21402 0.91581 1.02147 1.02246 1.21583 0.94625 0.91938 1.01298 1.21362 0.99607 0.92337 1.02763 1.23206 1.03000 1.01448 0.90837 1.22392 0.97956 1.05042 0.95729 0.86155 1.19689 0.84377 0.84866 0.78324 1.90717 1.68575 1.20723 1.60952 1.45999 1.24491 1.13084 1.52865 1.22541 0.81662 1.00924 0.92701 0.86356 1.23448 0.95341 0.99529 0.99140 1.20868 0.93862 0.93804 0.96204 1.20378 0.95707 0.92293 0.85875 1.42248 1.58907 1.35669 1.01368 1.20075 1.24519 1.08945 0.92339 0.91799 1.25712 1.02566 1.01872 0.94119 1.70808 1.33148 1.17526 1.37616 0.83168 0.75512 0.74551 0.75232 1.22153 1.22114 1.22061 1.19474 0.94909 0.93913 0.95826 1.21032 1.00540 0.93139 0.98410 1.21066 0.95984 0.97237 0.99375 1.21032 0.96583 0.99127 0.98179 1.21040 0.99572 0.93792 0.99483 1.20899 0.95049 0.96819 0.99987 1.23472 0.96692 1.01034 0.95933 0.91945 0.91622 0.92355 0.91642 0.93349 0.91281 0.88273 0.87972 0.76764 0.89732 0.89600 0.95945 0.95558 0.79862 0.93408 0.86209 0.86498 0.86697 0.86592 0.86509 0.90793 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.85 37.16 0.37 -0.44 16 2 C -0.09 -0.85 2.70 -154.51 -0.42 -1.27 16 3 C -0.10 -1.12 8.09 37.16 0.30 -0.82 16 4 C -0.15 -1.18 9.53 -26.73 -0.25 -1.44 16 5 C -0.19 -1.76 5.91 -91.77 -0.54 -2.30 16 6 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 7 C 0.54 6.75 7.59 -10.99 -0.08 6.67 16 8 O -0.53 -8.56 12.70 5.55 0.07 -8.49 16 9 N -0.71 -8.04 5.35 -53.02 -0.28 -8.32 16 10 C 0.13 1.73 3.89 -67.11 -0.26 1.47 16 11 H 0.12 1.96 6.94 -51.93 -0.36 1.60 16 12 C -0.14 -1.96 5.82 -25.92 -0.15 -2.11 16 13 C -0.05 -0.74 0.63 -154.85 -0.10 -0.83 16 14 C 0.19 3.78 5.43 -4.05 -0.02 3.76 16 15 N -0.74 -18.56 5.22 -59.91 -0.31 -18.87 16 16 C -0.33 -9.40 9.99 -15.06 -0.15 -9.55 16 17 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.05 -1.34 5.50 -17.43 -0.10 -1.43 16 19 N -0.95 -29.54 13.70 55.49 0.76 -28.78 16 20 Si 1.08 26.68 29.92 -169.99 -5.09 21.59 16 21 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C -0.04 -0.66 4.67 -104.63 -0.49 -1.15 16 25 C -0.11 -1.77 9.05 -39.58 -0.36 -2.13 16 26 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 27 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 28 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 29 C -0.11 -1.70 9.33 -39.58 -0.37 -2.07 16 30 C -0.13 -1.76 6.90 -25.92 -0.18 -1.94 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 33 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 34 H 0.06 0.80 7.01 -51.93 -0.36 0.43 16 35 H 0.05 0.43 7.92 -51.93 -0.41 0.02 16 36 H 0.07 0.88 7.26 -51.93 -0.38 0.50 16 37 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 38 H 0.10 0.61 8.05 -51.93 -0.42 0.19 16 39 H 0.40 3.40 8.73 -40.82 -0.36 3.04 16 40 H 0.08 1.03 6.81 -51.93 -0.35 0.67 16 41 H 0.09 1.46 7.75 -51.92 -0.40 1.06 16 42 H 0.02 0.48 7.31 -51.93 -0.38 0.10 16 43 H 0.03 0.56 7.96 -51.93 -0.41 0.15 16 44 H 0.37 9.47 6.10 -40.82 -0.25 9.22 16 45 H 0.25 7.84 6.77 -40.82 -0.28 7.56 16 46 H 0.12 1.77 6.45 -52.48 -0.34 1.43 16 47 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 48 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 49 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 50 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 51 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 52 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 414.71 15.07 6.25 6.25 Total: -1.00 -33.98 414.71 -11.12 -45.10 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -8.52 Total: 13.56 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -4.00 Total: -22.04 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.16 Total: -55.97 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.07 Total: -8.49 kcal Atomic # 14 Polarization: 26.68 SS G_CDS: -5.09 Total: 21.59 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.98 -11.12 -45.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105418525.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.621 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds