Wall clock time and date at job start Wed Apr 1 2020 02:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38253 * 119.99989 * 2 1 4 4 C 1.38218 * 119.99735 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00194 * 359.97241 * 4 3 2 6 6 C 1.38213 * 119.99746 * 0.02708 * 5 4 3 7 7 C 1.50703 * 119.99574 * 179.97438 * 6 5 4 8 8 H 1.08997 * 115.56017 * 154.31885 * 7 6 5 9 9 C 1.52996 * 117.50262 * 8.61883 * 7 6 5 10 10 C 1.53001 * 60.00293 * 252.51527 * 9 7 6 11 11 H 1.08996 * 117.49938 * 107.51233 * 10 9 7 12 12 C 1.50695 * 117.49558 * 252.51150 * 10 9 7 13 13 O 1.21286 * 120.00322 * 68.61016 * 12 10 9 14 14 N 1.34781 * 120.00013 * 248.60726 * 12 10 9 15 15 C 1.48145 * 127.83672 * 179.97438 * 14 12 10 16 16 C 1.54395 * 104.61454 * 219.60536 * 15 14 12 17 17 H 1.09002 * 110.34481 * 95.00280 * 16 15 14 18 18 C 1.52998 * 110.43060 * 217.21687 * 16 15 14 19 19 N 1.46495 * 109.47115 * 292.06339 * 18 16 15 20 20 C 1.36937 * 120.00092 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00158 * 359.97438 * 20 19 18 22 22 C 1.38820 * 120.00235 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99512 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00030 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47037 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47377 * 119.99713 * 24 22 20 27 27 H 1.48504 * 109.46875 * 240.00090 * 24 22 20 28 28 C 1.54281 * 104.95731 * 336.13228 * 16 15 14 29 29 H 1.09001 * 110.34452 * 241.02011 * 28 16 15 30 30 C 1.53006 * 110.34387 * 118.87570 * 28 16 15 31 31 C 1.48140 * 127.83553 * 359.97438 * 14 12 10 32 32 C 1.38217 * 120.00032 * 180.23582 * 2 1 3 33 33 H 1.08997 * 109.47320 * 89.99845 * 1 2 3 34 34 H 1.09002 * 109.46805 * 209.99902 * 1 2 3 35 35 H 1.09000 * 109.46485 * 329.99639 * 1 2 3 36 36 H 1.07995 * 120.00354 * 0.02562 * 3 2 1 37 37 H 1.08002 * 119.99777 * 180.02562 * 4 3 2 38 38 H 1.08001 * 119.99723 * 180.02562 * 5 4 3 39 39 H 1.08993 * 117.49863 * 145.01951 * 9 7 6 40 40 H 1.09000 * 117.49648 * 0.02562 * 9 7 6 41 41 H 1.08990 * 110.41068 * 100.82226 * 15 14 12 42 42 H 1.09000 * 110.40585 * 338.38365 * 15 14 12 43 43 H 1.09003 * 109.47249 * 52.06179 * 18 16 15 44 44 H 1.09002 * 109.47127 * 172.06017 * 18 16 15 45 45 H 0.96998 * 120.00197 * 359.97438 * 19 18 16 46 46 H 0.96998 * 119.99227 * 179.97438 * 23 22 20 47 47 H 1.08996 * 109.47126 * 59.99440 * 30 28 16 48 48 H 1.08995 * 109.47333 * 180.02562 * 30 28 16 49 49 H 1.09000 * 109.46800 * 299.99898 * 30 28 16 50 50 H 1.08998 * 110.41105 * 21.61541 * 31 14 12 51 51 H 1.09004 * 110.40870 * 259.17422 * 31 14 12 52 52 H 1.07998 * 120.00135 * 0.04277 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 3.5806 -1.1970 0.0017 7 6 4.3341 -2.5021 0.0023 8 1 3.8017 -3.3524 0.4284 9 6 5.8493 -2.4431 0.2063 10 6 5.2754 -2.7749 -1.1727 11 1 5.3501 -2.0105 -1.9461 12 6 5.3956 -4.1985 -1.6520 13 8 4.7591 -5.0769 -1.1094 14 7 6.2103 -4.4958 -2.6838 15 6 6.4593 -5.8236 -3.2917 16 6 7.9738 -5.8368 -3.5917 17 1 8.5178 -6.3115 -2.7751 18 6 8.2510 -6.5649 -4.9085 19 7 7.9478 -7.9896 -4.7519 20 6 8.1213 -8.8464 -5.8059 21 1 8.4813 -8.4719 -6.7527 22 6 7.8334 -10.1963 -5.6577 23 7 7.3942 -10.6527 -4.5040 24 14 8.0708 -11.3652 -7.0953 25 1 8.5711 -10.6086 -8.2711 26 1 9.0560 -12.4125 -6.7244 27 1 6.7733 -12.0036 -7.4336 28 6 8.3698 -4.3502 -3.7072 29 1 8.7620 -4.1386 -4.7020 30 6 9.4066 -3.9915 -2.6406 31 6 7.0598 -3.5688 -3.4671 32 6 2.1981 -1.1970 -0.0049 33 1 -0.3634 0.0000 -1.0276 34 1 -0.3633 -0.8900 0.5138 35 1 -0.3632 0.8900 0.5139 36 1 1.6583 2.1326 0.0004 37 1 4.1205 2.1326 0.0010 38 1 5.3517 -0.0001 0.0025 39 1 6.3136 -3.2543 0.7667 40 1 6.3011 -1.4602 0.3404 41 1 5.8883 -5.9327 -4.2136 42 1 6.2041 -6.6171 -2.5893 43 1 7.6246 -6.1444 -5.6951 44 1 9.3007 -6.4441 -5.1764 45 1 7.6248 -8.3261 -3.9014 46 1 7.1927 -11.5958 -4.4006 47 1 10.2953 -4.6077 -2.7761 48 1 9.6756 -2.9394 -2.7347 49 1 8.9869 -4.1717 -1.6509 50 1 7.2577 -2.6610 -2.8971 51 1 6.5824 -3.3261 -4.4165 52 1 1.6581 -2.1323 -0.0095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106751345.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:50 Heat of formation + Delta-G solvation = 17.743513 kcal Electronic energy + Delta-G solvation = -29052.783434 eV Core-core repulsion = 25210.588033 eV Total energy + Delta-G solvation = -3842.195401 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.54112 -39.68429 -38.25078 -36.44899 -34.62482 -32.84187 -32.65538 -31.39752 -31.12291 -29.15967 -27.23682 -26.57163 -26.05321 -24.12735 -23.70858 -22.85701 -22.30314 -21.20416 -20.07040 -19.72914 -18.94797 -17.69189 -17.03315 -16.70747 -15.90103 -15.83334 -15.30115 -15.26113 -14.69425 -14.44428 -14.29330 -14.10221 -13.82655 -13.57150 -13.44830 -13.38822 -13.12329 -12.93692 -12.78004 -12.59844 -12.51317 -12.30968 -12.17075 -12.00271 -11.65783 -11.57996 -11.27614 -11.22738 -11.15921 -10.90241 -10.86235 -10.68862 -10.56705 -10.50021 -10.28910 -9.96473 -9.77134 -9.65964 -9.03414 -8.88037 -8.79082 -8.58722 -6.91748 -5.74971 -3.04293 0.99025 1.09587 2.50571 2.94369 3.35535 3.44378 3.49512 3.52169 3.80878 4.16855 4.42058 4.52439 4.56112 4.58179 4.62044 4.63807 4.70987 4.81220 4.88500 4.92315 4.97117 5.03723 5.14723 5.27604 5.33676 5.35580 5.41520 5.45671 5.50867 5.51471 5.57304 5.59374 5.65873 5.73245 5.76455 5.81476 5.81733 5.87030 6.01355 6.08649 6.12455 6.17468 6.20550 6.24745 6.29444 6.36132 6.41115 6.53844 6.71389 6.71739 6.84988 7.66184 7.71211 8.23704 8.43300 9.54544 10.11927 10.46156 11.47742 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018299 B = 0.001964 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.734891 B =14250.854248 C =15089.477630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.126 4.126 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.046 4.046 7 C -0.086 4.086 8 H 0.127 0.873 9 C -0.144 4.144 10 C -0.170 4.170 11 H 0.123 0.877 12 C 0.560 3.440 13 O -0.540 6.540 14 N -0.617 5.617 15 C 0.115 3.885 16 C -0.103 4.103 17 H 0.082 0.918 18 C 0.163 3.837 19 N -0.733 5.733 20 C -0.240 4.240 21 H 0.071 0.929 22 C -0.014 4.014 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.101 4.101 29 H 0.089 0.911 30 C -0.140 4.140 31 C 0.105 3.895 32 C -0.109 4.109 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.021 0.979 44 H 0.023 0.977 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.053 0.947 50 H 0.077 0.923 51 H 0.072 0.928 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.023 28.124 10.123 30.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.046 4.046 7 C -0.104 4.104 8 H 0.145 0.855 9 C -0.181 4.181 10 C -0.191 4.191 11 H 0.141 0.859 12 C 0.349 3.651 13 O -0.418 6.418 14 N -0.350 5.350 15 C -0.006 4.006 16 C -0.123 4.123 17 H 0.100 0.900 18 C 0.035 3.965 19 N -0.377 5.377 20 C -0.372 4.372 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.121 4.121 29 H 0.107 0.893 30 C -0.198 4.198 31 C -0.018 4.018 32 C -0.127 4.127 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.039 0.961 44 H 0.040 0.960 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.096 0.904 51 H 0.090 0.910 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.404 27.603 10.329 30.160 hybrid contribution 0.111 -0.823 -0.691 1.080 sum -6.294 26.780 9.637 29.149 Atomic orbital electron populations 1.20807 0.91124 1.02822 1.02469 1.19922 0.96146 0.93038 0.99313 1.21034 0.94317 0.97459 1.01606 1.21094 0.94283 0.97847 0.99963 1.21047 1.00002 0.91905 1.01441 1.19113 0.93313 0.92899 0.99262 1.21095 0.91913 0.96866 1.00528 0.85484 1.23124 0.95452 1.03618 0.95879 1.22286 1.07440 0.95875 0.93485 0.85928 1.19138 0.78392 0.89047 0.78529 1.90725 1.45301 1.49121 1.56610 1.48938 1.43286 1.10847 1.31957 1.22451 0.95616 0.84212 0.98356 1.22389 0.95088 0.94392 1.00383 0.89979 1.20720 0.97394 0.85850 0.92502 1.42384 1.79936 1.01654 1.13772 1.19254 1.36977 0.88991 0.91940 0.91126 1.24763 1.02125 0.97082 0.97058 1.69675 1.51203 1.13941 1.23146 0.86120 0.77266 0.81174 0.81636 1.20577 1.21889 1.21880 1.22118 0.94584 0.95034 1.00355 0.89295 1.21823 0.98643 1.00825 0.98470 1.22502 0.90637 0.93077 0.95626 1.20912 0.93372 0.97874 1.00590 0.91071 0.91393 0.91565 0.86212 0.86035 0.85898 0.87634 0.87437 0.90456 0.89779 0.96134 0.95967 0.78217 0.93527 0.92103 0.92834 0.92783 0.90435 0.90996 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.01 36.01 0.36 -0.36 16 2 C -0.08 -0.71 5.88 -104.62 -0.62 -1.32 16 3 C -0.13 -0.97 9.70 -39.58 -0.38 -1.36 16 4 C -0.11 -0.86 10.05 -39.58 -0.40 -1.26 16 5 C -0.13 -1.04 9.30 -39.58 -0.37 -1.41 16 6 C -0.05 -0.44 5.61 -104.62 -0.59 -1.03 16 7 C -0.09 -0.89 5.56 -91.77 -0.51 -1.40 16 8 H 0.13 1.52 7.67 -51.93 -0.40 1.12 16 9 C -0.14 -1.28 9.56 -26.73 -0.26 -1.53 16 10 C -0.17 -1.82 4.94 -91.77 -0.45 -2.28 16 11 H 0.12 1.13 7.65 -51.93 -0.40 0.73 16 12 C 0.56 8.37 7.70 -10.99 -0.08 8.29 16 13 O -0.54 -10.29 16.52 5.55 0.09 -10.20 16 14 N -0.62 -8.75 3.32 -169.29 -0.56 -9.31 16 15 C 0.12 1.94 6.34 -2.41 -0.02 1.92 16 16 C -0.10 -1.62 2.76 -89.22 -0.25 -1.86 16 17 H 0.08 1.39 7.71 -51.93 -0.40 0.99 16 18 C 0.16 3.15 5.37 -4.05 -0.02 3.13 16 19 N -0.73 -18.43 5.46 -59.91 -0.33 -18.76 16 20 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 24 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 C -0.10 -1.17 3.31 -89.20 -0.30 -1.47 16 29 H 0.09 0.96 7.71 -51.93 -0.40 0.56 16 30 C -0.14 -1.44 8.91 37.16 0.33 -1.11 16 31 C 0.10 1.12 6.37 -2.40 -0.02 1.11 16 32 C -0.11 -1.05 9.39 -39.58 -0.37 -1.42 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 36 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.12 0.80 6.02 -52.49 -0.32 0.49 16 39 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.11 0.70 6.18 -51.93 -0.32 0.38 16 41 H 0.08 1.37 7.78 -51.93 -0.40 0.97 16 42 H 0.08 1.63 7.88 -51.93 -0.41 1.22 16 43 H 0.02 0.40 8.02 -51.93 -0.42 -0.02 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.38 10.28 7.56 -40.82 -0.31 9.97 16 46 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.66 6.93 -51.93 -0.36 0.30 16 51 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 52 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 420.06 15.07 6.33 6.33 Total: -1.00 -33.59 420.06 -11.69 -45.27 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -8.74 Total: 7.69 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -4.18 Total: -10.75 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.16 Total: -55.90 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.59 -11.69 -45.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106751345.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.015 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds