Wall clock time and date at job start Wed Apr 1 2020 02:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38242 * 120.00129 * 2 1 4 4 C 1.38228 * 120.00285 * 179.97438 * 3 2 1 5 5 C 1.38241 * 119.99617 * 0.27621 * 4 3 2 6 6 C 1.50705 * 119.99855 * 179.72462 * 5 4 3 7 7 C 1.50702 * 109.46822 * 90.00278 * 6 5 4 8 8 O 1.21279 * 120.00213 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99621 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99850 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46892 * 179.97438 * 10 9 7 12 12 C 1.53435 * 111.21827 * 298.98144 * 11 10 9 13 13 C 1.53651 * 107.15988 * 242.10652 * 12 11 10 14 14 C 1.53891 * 105.86838 * 339.99944 * 13 12 11 15 15 C 1.53750 * 105.45509 * 28.28384 * 14 13 12 16 16 H 1.09001 * 110.52256 * 94.80628 * 15 14 13 17 17 N 1.46968 * 110.07504 * 218.81775 * 15 14 13 18 18 C 1.36934 * 126.36897 * 267.87288 * 17 15 14 19 19 H 1.08007 * 119.99663 * 344.72523 * 18 17 15 20 20 C 1.38808 * 120.00619 * 164.73407 * 18 17 15 21 21 N 1.31623 * 119.99422 * 351.66196 * 20 18 17 22 22 Si 1.86797 * 120.00451 * 171.66721 * 20 18 17 23 23 H 1.48500 * 109.47248 * 94.97653 * 22 20 18 24 24 H 1.48504 * 109.47259 * 214.97794 * 22 20 18 25 25 H 1.48496 * 109.46952 * 334.97818 * 22 20 18 26 26 C 1.47113 * 107.26878 * 87.86806 * 17 15 14 27 27 C 1.53891 * 111.24018 * 61.21350 * 11 10 9 28 28 C 1.38232 * 119.99897 * 359.51235 * 5 4 3 29 29 C 1.38229 * 120.00317 * 0.46796 * 28 5 4 30 30 H 1.09002 * 109.47307 * 89.99933 * 1 2 3 31 31 H 1.08994 * 109.47542 * 210.00211 * 1 2 3 32 32 H 1.09006 * 109.47344 * 330.00245 * 1 2 3 33 33 H 1.08002 * 119.99583 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.00224 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.46989 * 210.00090 * 6 5 4 36 36 H 1.08998 * 109.46766 * 330.00398 * 6 5 4 37 37 H 0.97001 * 120.00128 * 359.97438 * 9 7 6 38 38 H 1.09003 * 109.46973 * 299.99763 * 10 9 7 39 39 H 1.08997 * 109.47146 * 59.99644 * 10 9 7 40 40 H 1.09003 * 109.90161 * 1.49308 * 12 11 10 41 41 H 1.09005 * 109.89612 * 122.72434 * 12 11 10 42 42 H 1.09000 * 110.17091 * 99.10069 * 13 12 11 43 43 H 1.09008 * 110.16861 * 220.82888 * 13 12 11 44 44 H 1.08997 * 110.24999 * 147.27945 * 14 13 12 45 45 H 1.09003 * 110.25164 * 269.29206 * 14 13 12 46 46 H 0.97008 * 119.99773 * 180.02562 * 21 20 18 47 47 H 1.09007 * 110.08606 * 148.90969 * 26 17 15 48 48 H 1.09000 * 110.08582 * 270.41670 * 26 17 15 49 49 H 1.09002 * 110.24333 * 243.80235 * 27 11 10 50 50 H 1.08993 * 110.24841 * 5.80129 * 27 11 10 51 51 H 1.08006 * 120.00017 * 180.25641 * 28 5 4 52 52 H 1.07999 * 120.00115 * 179.79466 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 -0.0047 6 6 5.7787 0.0000 -0.0104 7 6 6.2863 -0.0032 1.4086 8 8 5.5017 -0.0048 2.3333 9 7 7.6123 -0.0032 1.6498 10 6 8.1059 -0.0057 3.0292 11 6 9.6358 -0.0059 3.0234 12 6 10.1884 -1.2559 2.3260 13 6 10.9967 -2.0388 3.3723 14 6 11.3363 -1.0294 4.4831 15 6 10.2005 0.0065 4.4568 16 1 9.4301 -0.2526 5.1831 17 7 10.7404 1.3533 4.6902 18 6 10.8572 1.9828 5.9006 19 1 10.3225 1.6049 6.7596 20 6 11.6624 3.1068 6.0237 21 7 12.4397 3.4718 5.0263 22 14 11.6429 4.1012 7.6049 23 1 12.7477 3.6486 8.4880 24 1 11.8216 5.5407 7.2867 25 1 10.3439 3.9048 8.2971 26 6 11.1324 1.8995 3.3816 27 6 10.1908 1.2524 2.3328 28 6 3.5805 -1.1971 -0.0003 29 6 2.1982 -1.1971 -0.0004 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6582 2.1325 -0.0004 34 1 4.1205 2.1325 0.0001 35 1 6.1401 -0.8888 -0.5275 36 1 6.1400 0.8912 -0.5236 37 1 8.2399 -0.0016 0.9102 38 1 7.7442 0.8832 3.5461 39 1 7.7447 -0.8968 3.5427 40 1 9.3661 -1.8692 1.9574 41 1 10.8361 -0.9637 1.4994 42 1 10.3977 -2.8549 3.7763 43 1 11.9110 -2.4295 2.9255 44 1 11.3681 -1.5299 5.4509 45 1 12.2915 -0.5470 4.2755 46 1 13.0027 4.2570 5.1124 47 1 11.0129 2.9830 3.3772 48 1 12.1669 1.6365 3.1609 49 1 10.7449 0.9769 1.4355 50 1 9.3784 1.9339 2.0810 51 1 4.1205 -2.1325 -0.0002 52 1 1.6582 -2.1324 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107466607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:04 Heat of formation + Delta-G solvation = -8.217510 kcal Electronic energy + Delta-G solvation = -29825.317335 eV Core-core repulsion = 25981.996180 eV Total energy + Delta-G solvation = -3843.321155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.24992 -39.54516 -38.58538 -34.75405 -33.92258 -33.86672 -31.70608 -31.04011 -30.61670 -29.76538 -27.96858 -26.86121 -25.68476 -24.04927 -23.60663 -22.85660 -21.30489 -20.51658 -20.40124 -19.53038 -18.33858 -17.20994 -16.76217 -16.39117 -15.93797 -15.48479 -15.08565 -14.99225 -14.86129 -14.51606 -14.08561 -13.89862 -13.65722 -13.57803 -13.54054 -13.34437 -13.01981 -12.93358 -12.65240 -12.49942 -12.00818 -11.98415 -11.87494 -11.61763 -11.28203 -11.14040 -11.07558 -10.92386 -10.86732 -10.66518 -10.58242 -10.23354 -10.08605 -10.00048 -9.95865 -9.73131 -9.62881 -9.55294 -9.01263 -8.84604 -8.61746 -8.56687 -6.80223 -5.77038 -3.10594 1.18128 1.31821 2.74434 3.25802 3.39189 3.45585 3.47584 3.73483 4.48706 4.49500 4.62639 4.75979 4.88051 4.88408 4.94518 4.95525 5.06599 5.08288 5.26092 5.28042 5.35214 5.36674 5.47471 5.54798 5.58012 5.59367 5.61594 5.73203 5.90507 5.95060 5.95173 5.98045 6.07343 6.10590 6.14520 6.16985 6.27832 6.31489 6.41549 6.45874 6.47005 6.47782 6.52635 6.64713 6.70318 6.78716 6.89381 6.90976 7.12728 7.46606 7.62268 7.63477 7.77470 8.27744 8.34731 9.18567 9.80437 10.51888 11.36647 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.002351 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.221827 B =11907.488886 C =13018.330815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.120 4.120 4 C -0.100 4.100 5 C -0.068 4.068 6 C -0.104 4.104 7 C 0.510 3.490 8 O -0.534 6.534 9 N -0.724 5.724 10 C 0.143 3.857 11 C -0.082 4.082 12 C -0.110 4.110 13 C -0.120 4.120 14 C -0.136 4.136 15 C 0.172 3.828 16 H 0.055 0.945 17 N -0.585 5.585 18 C -0.228 4.228 19 H 0.075 0.925 20 C -0.004 4.004 21 N -0.916 5.916 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.172 3.828 27 C -0.135 4.135 28 C -0.101 4.101 29 C -0.121 4.121 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.399 0.601 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.252 0.748 47 H 0.068 0.932 48 H 0.022 0.978 49 H 0.058 0.942 50 H 0.055 0.945 51 H 0.119 0.881 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.271 -9.797 -15.351 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.068 4.068 6 C -0.144 4.144 7 C 0.295 3.705 8 O -0.410 6.410 9 N -0.376 5.376 10 C 0.020 3.980 11 C -0.084 4.084 12 C -0.148 4.148 13 C -0.158 4.158 14 C -0.177 4.177 15 C 0.062 3.938 16 H 0.073 0.927 17 N -0.306 5.306 18 C -0.356 4.356 19 H 0.092 0.908 20 C -0.201 4.201 21 N -0.562 5.562 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.046 3.954 27 C -0.174 4.174 28 C -0.120 4.120 29 C -0.139 4.139 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.063 0.937 47 H 0.087 0.913 48 H 0.040 0.960 49 H 0.076 0.924 50 H 0.074 0.926 51 H 0.137 0.863 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.725 -9.562 -14.545 23.457 hybrid contribution 0.607 0.537 0.507 0.956 sum -15.118 -9.025 -14.038 22.518 Atomic orbital electron populations 1.20780 0.91384 1.02753 1.02088 1.19905 0.95962 0.93295 0.99918 1.20971 0.94078 0.97486 1.01260 1.20983 0.94247 0.97461 0.99160 1.19266 0.93643 0.93578 1.00335 1.20691 0.93248 1.05164 0.95248 1.20471 0.82370 0.76609 0.91049 1.90735 1.55527 1.48834 1.45948 1.46083 1.06604 1.75220 1.09670 1.21362 0.92930 1.02045 0.81693 1.21853 0.92598 0.95688 0.98271 1.22140 0.98802 0.95788 0.98077 1.22000 0.98990 0.97995 0.96809 1.22707 1.01477 0.96572 0.96917 1.21142 0.93551 0.87110 0.91975 0.92736 1.44364 1.72536 1.10632 1.03090 1.19000 1.22005 1.07932 0.86693 0.90753 1.24868 0.97458 0.99996 0.97819 1.69950 1.28000 1.27118 1.31120 0.86154 0.77699 0.79540 0.82698 1.21604 1.21666 1.20522 1.21271 0.93629 0.98115 0.82357 1.23012 0.99814 0.95869 0.98737 1.20943 0.94216 0.97338 0.99458 1.20949 0.94060 0.97437 1.01443 0.91345 0.91639 0.91604 0.86182 0.86162 0.88112 0.87992 0.76690 0.91091 0.91932 0.92437 0.91829 0.92700 0.92595 0.92824 0.91196 0.93743 0.91323 0.95981 0.92352 0.92613 0.86293 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.09 -0.90 5.88 -104.62 -0.62 -1.52 16 3 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 4 C -0.10 -1.12 9.70 -39.58 -0.38 -1.51 16 5 C -0.07 -0.76 4.37 -104.62 -0.46 -1.22 16 6 C -0.10 -0.98 5.83 -29.03 -0.17 -1.15 16 7 C 0.51 6.83 7.82 -10.98 -0.09 6.75 16 8 O -0.53 -9.62 16.03 5.56 0.09 -9.53 16 9 N -0.72 -9.06 4.84 -60.29 -0.29 -9.35 16 10 C 0.14 2.23 4.23 -4.04 -0.02 2.21 16 11 C -0.08 -1.33 0.72 -153.26 -0.11 -1.44 16 12 C -0.11 -1.48 5.61 -26.17 -0.15 -1.62 16 13 C -0.12 -1.71 6.80 -25.93 -0.18 -1.89 16 14 C -0.14 -2.49 6.45 -25.88 -0.17 -2.66 16 15 C 0.17 3.42 3.39 -66.73 -0.23 3.19 16 16 H 0.05 1.11 7.85 -51.93 -0.41 0.70 16 17 N -0.58 -14.36 2.97 -162.46 -0.48 -14.84 16 18 C -0.23 -6.25 10.26 -15.06 -0.15 -6.40 16 19 H 0.07 2.00 7.84 -52.48 -0.41 1.59 16 20 C 0.00 -0.12 5.39 -17.43 -0.09 -0.22 16 21 N -0.92 -26.53 10.88 55.49 0.60 -25.93 16 22 Si 0.91 22.05 29.56 -169.99 -5.03 17.02 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.17 3.99 5.37 -2.61 -0.01 3.98 16 27 C -0.14 -2.35 5.81 -25.17 -0.15 -2.49 16 28 C -0.10 -1.09 9.70 -39.59 -0.38 -1.47 16 29 C -0.12 -1.22 9.70 -39.59 -0.38 -1.60 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.10 0.70 8.09 -51.93 -0.42 0.28 16 36 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 37 H 0.40 3.98 7.82 -40.82 -0.32 3.66 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.68 7.46 -51.93 -0.39 0.29 16 41 H 0.06 0.81 7.01 -51.93 -0.36 0.44 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 1.46 7.94 -51.93 -0.41 1.05 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.07 1.80 6.91 -51.93 -0.36 1.45 16 48 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.88 7.04 -51.93 -0.37 0.51 16 50 H 0.06 0.95 7.65 -51.93 -0.40 0.55 16 51 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 52 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 409.72 15.07 6.17 6.17 Total: -1.00 -32.62 409.72 -11.57 -44.20 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.89 Total: 3.40 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -3.75 Total: -11.14 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.17 Total: -50.13 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.62 -11.57 -44.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107466607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.980 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds