Wall clock time and date at job start Wed Apr 1 2020 02:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38248 * 120.00266 * 2 1 4 4 C 1.38218 * 119.99998 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99661 * 0.02562 * 4 3 2 6 6 C 1.38207 * 120.00397 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.00089 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47262 * 90.00074 * 7 6 5 9 9 O 1.21277 * 119.99935 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00081 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00282 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47438 * 180.02562 * 11 10 8 13 13 C 1.53357 * 111.22426 * 297.62627 * 12 11 10 14 14 C 1.55532 * 105.83867 * 241.97461 * 13 12 11 15 15 C 1.54686 * 104.35220 * 334.35659 * 14 13 12 16 16 C 1.54571 * 111.31780 * 177.45544 * 12 11 10 17 17 H 1.09004 * 111.92650 * 18.70822 * 16 12 11 18 18 N 1.46892 * 107.36662 * 255.61590 * 16 12 11 19 19 C 1.36933 * 125.25233 * 181.63407 * 18 16 12 20 20 H 1.07996 * 120.00038 * 9.65575 * 19 18 16 21 21 C 1.38810 * 119.99941 * 189.64916 * 19 18 16 22 22 N 1.31616 * 120.00043 * 8.99516 * 21 19 18 23 23 Si 1.86801 * 120.00152 * 188.99082 * 21 19 18 24 24 H 1.48497 * 109.47466 * 94.39004 * 23 21 19 25 25 H 1.48497 * 109.47446 * 214.39568 * 23 21 19 26 26 H 1.48510 * 109.46874 * 334.39288 * 23 21 19 27 27 C 1.46741 * 109.49565 * 1.65785 * 18 16 12 28 28 C 1.53859 * 111.26024 * 61.01023 * 12 11 10 29 29 C 1.38218 * 119.99594 * 179.72933 * 2 1 3 30 30 H 1.08998 * 109.47372 * 89.99859 * 1 2 3 31 31 H 1.09007 * 109.46577 * 330.00240 * 1 2 3 32 32 H 1.08996 * 109.47109 * 210.00680 * 1 2 3 33 33 H 1.07997 * 120.00549 * 0.02562 * 3 2 1 34 34 H 1.07994 * 119.99921 * 180.02562 * 4 3 2 35 35 H 1.08002 * 119.99827 * 180.02562 * 5 4 3 36 36 H 1.08999 * 109.47017 * 209.99460 * 7 6 5 37 37 H 1.08996 * 109.47228 * 329.99562 * 7 6 5 38 38 H 0.97000 * 120.00208 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.46651 * 300.00170 * 11 10 8 40 40 H 1.09002 * 109.46953 * 59.99067 * 11 10 8 41 41 H 1.09005 * 110.06075 * 1.97890 * 13 12 11 42 42 H 1.09000 * 110.05723 * 123.47210 * 13 12 11 43 43 H 1.09002 * 110.54493 * 215.55300 * 14 13 12 44 44 H 1.08994 * 110.35456 * 93.07671 * 14 13 12 45 45 H 1.08999 * 110.61430 * 278.65321 * 15 14 13 46 46 H 1.08996 * 110.61589 * 155.66017 * 15 14 13 47 47 H 0.97011 * 119.99783 * 179.97438 * 22 21 19 48 48 H 1.09004 * 110.03968 * 221.97006 * 27 18 16 49 49 H 1.09000 * 110.04214 * 100.51256 * 27 18 16 50 50 H 1.08997 * 110.57547 * 212.51812 * 28 12 11 51 51 H 1.09003 * 110.57604 * 335.24523 * 28 12 11 52 52 H 1.08004 * 119.99998 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0003 0.0005 6 6 3.5806 -1.1972 -0.0005 7 6 4.3340 -2.5023 0.0000 8 6 4.5835 -2.9377 1.4211 9 8 4.1888 -2.2551 2.3426 10 7 5.2461 -4.0850 1.6678 11 6 5.4892 -4.5081 3.0493 12 6 6.2551 -5.8325 3.0498 13 6 5.4373 -6.9471 2.3859 14 6 5.2027 -8.0168 3.4903 15 6 6.3845 -7.8229 4.4693 16 6 6.5903 -6.2872 4.4886 17 1 5.9644 -5.7891 5.2291 18 7 8.0175 -6.0206 4.7115 19 6 8.7068 -6.3143 5.8576 20 1 8.2451 -6.9162 6.6262 21 6 9.9991 -5.8383 6.0315 22 7 10.4979 -4.9636 5.1839 23 14 11.0303 -6.4390 7.4686 24 1 11.8748 -7.5789 7.0297 25 1 11.8996 -5.3354 7.9497 26 1 10.1361 -6.8805 8.5691 27 6 8.5904 -5.3906 3.5164 28 6 7.6209 -5.6875 2.3564 29 6 2.1980 -1.1970 0.0057 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 0.8901 0.5138 32 1 -0.3633 -0.8899 0.5139 33 1 1.6585 2.1326 0.0004 34 1 4.1205 2.1324 0.0010 35 1 5.3517 -0.0004 0.0014 36 1 3.7454 -3.2618 -0.5146 37 1 5.2870 -2.3719 -0.5127 38 1 5.5621 -4.6308 0.9308 39 1 6.0776 -3.7482 3.5637 40 1 4.5363 -4.6386 3.5622 41 1 4.4907 -6.5491 2.0203 42 1 6.0018 -7.3854 1.5629 43 1 5.2223 -9.0191 3.0623 44 1 4.2542 -7.8374 3.9965 45 1 7.2775 -8.3250 4.0971 46 1 6.1237 -8.1876 5.4627 47 1 11.4010 -4.6307 5.3056 48 1 9.5705 -5.8173 3.3027 49 1 8.6756 -4.3143 3.6660 50 1 7.8963 -6.6152 1.8549 51 1 7.6043 -4.8602 1.6468 52 1 1.6579 -2.1323 0.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107530160.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:08 Heat of formation + Delta-G solvation = -4.927411 kcal Electronic energy + Delta-G solvation = -29957.702651 eV Core-core repulsion = 26114.524165 eV Total energy + Delta-G solvation = -3843.178486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.25337 -39.54061 -38.55124 -34.72000 -33.92685 -33.62414 -32.17577 -31.71053 -30.37684 -28.60211 -27.34298 -26.87790 -26.66909 -24.28564 -23.82183 -22.31522 -21.37772 -20.34757 -20.08995 -19.73648 -18.26945 -17.19977 -16.69025 -16.61378 -15.90701 -15.67085 -15.08279 -14.86344 -14.72429 -14.70575 -14.23267 -13.94669 -13.56849 -13.44944 -13.32527 -13.17232 -13.07126 -12.95580 -12.59934 -12.43641 -12.01967 -11.98391 -11.84129 -11.57408 -11.30084 -11.19682 -11.15819 -11.09805 -10.77004 -10.70593 -10.67023 -10.27070 -10.13188 -10.05111 -9.81955 -9.72361 -9.64308 -9.54050 -8.87613 -8.82873 -8.68151 -8.54531 -6.77095 -5.71746 -3.04605 1.22808 1.30986 2.75985 3.26850 3.40683 3.46404 3.48252 3.74981 4.47877 4.50913 4.63440 4.76375 4.85015 4.97966 4.98812 5.00410 5.04975 5.09594 5.15166 5.33152 5.36738 5.39854 5.51181 5.53800 5.55718 5.56076 5.62821 5.75613 5.82013 5.87808 5.93936 6.00353 6.02820 6.07762 6.09424 6.20225 6.28960 6.35951 6.38607 6.43511 6.44632 6.46817 6.49852 6.64382 6.68076 6.76993 6.85482 6.91359 7.11125 7.55077 7.63236 7.65145 7.82436 8.29825 8.36001 9.23894 9.85757 10.51351 11.40489 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.002367 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.277046 B =11825.798073 C =12811.832871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.059 4.059 7 C -0.104 4.104 8 C 0.510 3.490 9 O -0.533 6.533 10 N -0.724 5.724 11 C 0.141 3.859 12 C -0.080 4.080 13 C -0.111 4.111 14 C -0.122 4.122 15 C -0.130 4.130 16 C 0.172 3.828 17 H 0.047 0.953 18 N -0.594 5.594 19 C -0.225 4.225 20 H 0.076 0.924 21 C -0.008 4.008 22 N -0.918 5.918 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.178 3.822 28 C -0.134 4.134 29 C -0.105 4.105 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.399 0.601 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.054 0.946 47 H 0.252 0.748 48 H 0.058 0.942 49 H 0.029 0.971 50 H 0.060 0.940 51 H 0.057 0.943 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.522 4.518 -15.721 23.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.128 4.128 6 C -0.059 4.059 7 C -0.144 4.144 8 C 0.295 3.705 9 O -0.409 6.409 10 N -0.376 5.376 11 C 0.018 3.982 12 C -0.081 4.081 13 C -0.148 4.148 14 C -0.160 4.160 15 C -0.170 4.170 16 C 0.064 3.936 17 H 0.065 0.935 18 N -0.318 5.318 19 C -0.354 4.354 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.565 5.565 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.053 3.947 28 C -0.172 4.172 29 C -0.123 4.123 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.233 0.767 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.076 0.924 49 H 0.047 0.953 50 H 0.078 0.922 51 H 0.076 0.924 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.580 5.084 -14.933 22.885 hybrid contribution 0.924 -0.533 0.490 1.174 sum -15.655 4.550 -14.443 21.781 Atomic orbital electron populations 1.20777 0.91322 1.02802 1.02072 1.19851 0.95955 0.93140 0.99953 1.20993 0.94295 0.97363 1.01468 1.21080 0.94290 0.97900 1.00100 1.20990 0.99817 0.92004 0.99950 1.19261 0.93482 0.93682 0.99518 1.20695 1.02261 0.96181 0.95254 1.20447 0.78101 0.80884 0.91019 1.90739 1.50459 1.53462 1.46235 1.46073 1.58065 1.23892 1.09592 1.21331 0.99353 0.95814 0.81699 1.21849 0.95314 0.93156 0.97807 1.22373 0.99007 0.95543 0.97914 1.22516 0.98919 0.97783 0.96807 1.22987 0.97163 0.99011 0.97875 1.21527 0.87670 0.92698 0.91741 0.93495 1.44321 1.02545 1.71588 1.13369 1.19000 0.95768 1.25708 0.94907 0.90634 1.24820 0.98269 0.98540 0.98785 1.69981 1.16142 1.32357 1.38032 0.86149 0.80353 0.77746 0.81816 1.21719 1.21843 1.20620 1.21036 0.94266 0.96599 0.82801 1.22779 0.94979 1.00366 0.99109 1.20829 0.93358 0.97549 1.00598 0.91337 0.91628 0.91573 0.86343 0.86101 0.86181 0.88114 0.87919 0.76702 0.90941 0.91820 0.92213 0.91834 0.92554 0.92403 0.91062 0.92722 0.93818 0.92410 0.95341 0.92168 0.92386 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.09 -0.92 5.88 -104.62 -0.62 -1.53 16 3 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 4 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 5 C -0.11 -1.25 9.70 -39.58 -0.38 -1.64 16 6 C -0.06 -0.68 4.37 -104.63 -0.46 -1.13 16 7 C -0.10 -1.01 5.83 -29.04 -0.17 -1.18 16 8 C 0.51 6.97 7.82 -10.99 -0.09 6.89 16 9 O -0.53 -9.78 16.03 5.56 0.09 -9.69 16 10 N -0.72 -9.19 4.65 -60.29 -0.28 -9.47 16 11 C 0.14 2.24 4.43 -4.04 -0.02 2.22 16 12 C -0.08 -1.28 0.53 -153.05 -0.08 -1.36 16 13 C -0.11 -1.44 5.75 -25.20 -0.14 -1.58 16 14 C -0.12 -1.68 6.88 -24.50 -0.17 -1.85 16 15 C -0.13 -2.30 6.23 -24.81 -0.15 -2.45 16 16 C 0.17 3.41 3.60 -65.86 -0.24 3.18 16 17 H 0.05 0.98 7.93 -51.93 -0.41 0.57 16 18 N -0.59 -14.61 2.99 -162.42 -0.49 -15.09 16 19 C -0.23 -6.16 9.92 -15.06 -0.15 -6.31 16 20 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 21 C -0.01 -0.21 5.41 -17.43 -0.09 -0.31 16 22 N -0.92 -26.89 10.58 55.49 0.59 -26.30 16 23 Si 0.91 22.13 29.56 -169.99 -5.03 17.11 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.18 4.18 5.35 -3.35 -0.02 4.16 16 28 C -0.13 -2.31 5.77 -25.72 -0.15 -2.46 16 29 C -0.11 -1.16 9.36 -39.58 -0.37 -1.53 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 37 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 38 H 0.40 3.99 7.55 -40.82 -0.31 3.68 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.69 7.51 -51.93 -0.39 0.30 16 42 H 0.06 0.77 7.28 -51.93 -0.38 0.40 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.38 8.06 -51.93 -0.42 0.96 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.25 7.19 8.31 -40.81 -0.34 6.85 16 48 H 0.06 1.52 7.16 -51.93 -0.37 1.15 16 49 H 0.03 0.75 7.83 -51.93 -0.41 0.35 16 50 H 0.06 0.99 7.42 -51.93 -0.39 0.61 16 51 H 0.06 0.89 7.03 -51.93 -0.36 0.53 16 52 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 409.07 15.07 6.16 6.16 Total: -1.00 -32.97 409.07 -11.56 -44.52 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.89 Total: 3.38 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -3.72 Total: -10.62 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.18 Total: -50.87 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.97 -11.56 -44.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107530160.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.597 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds