Wall clock time and date at job start Wed Apr 1 2020 02:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.51448 * 2 1 4 4 N 1.46502 * 109.47082 * 60.09947 * 3 2 1 5 5 C 1.34774 * 120.00289 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99709 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00255 * 180.02562 * 5 4 3 8 8 C 1.53001 * 109.47048 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46984 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.46984 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.47082 * 180.02562 * 10 9 8 12 12 C 1.34782 * 119.99639 * 179.97438 * 11 10 9 13 13 N 1.34780 * 119.99471 * 179.97438 * 12 11 10 14 14 O 1.21576 * 120.00313 * 0.02562 * 12 11 10 15 15 C 1.53294 * 109.55683 * 239.87055 * 2 1 3 16 16 N 1.47231 * 108.40580 * 292.36272 * 15 2 1 17 17 C 1.36930 * 121.03478 * 129.45775 * 16 15 2 18 18 H 1.08002 * 120.00530 * 206.18179 * 17 16 15 19 19 C 1.38816 * 119.99608 * 26.18409 * 17 16 15 20 20 N 1.31615 * 120.00526 * 16.88476 * 19 17 16 21 21 Si 1.86806 * 119.99896 * 196.88547 * 19 17 16 22 22 H 1.48497 * 109.46975 * 59.99586 * 21 19 17 23 23 H 1.48495 * 109.47304 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47064 * 300.00118 * 21 19 17 25 25 C 1.47154 * 117.98080 * 309.48144 * 16 15 2 26 26 C 1.53298 * 108.41825 * 50.52276 * 25 16 15 27 27 O 1.42959 * 109.50925 * 120.09967 * 2 1 3 28 28 H 1.09004 * 109.47366 * 299.89914 * 1 2 3 29 29 H 1.09004 * 109.47010 * 59.89917 * 1 2 3 30 30 H 1.09003 * 109.47551 * 179.89846 * 1 2 3 31 31 H 1.09002 * 109.47344 * 180.09758 * 3 2 1 32 32 H 1.08999 * 109.46999 * 300.09957 * 3 2 1 33 33 H 0.97000 * 120.00089 * 0.02562 * 4 3 2 34 34 H 1.08999 * 109.47080 * 299.99449 * 7 5 4 35 35 H 1.08999 * 109.47266 * 59.99972 * 7 5 4 36 36 H 1.09002 * 109.47344 * 299.99746 * 8 7 5 37 37 H 1.09003 * 109.46888 * 60.00427 * 8 7 5 38 38 H 1.08999 * 109.47399 * 299.99741 * 9 8 7 39 39 H 1.08999 * 109.47011 * 60.00303 * 9 8 7 40 40 H 1.09002 * 109.47344 * 300.00098 * 10 9 8 41 41 H 1.09003 * 109.47486 * 60.00312 * 10 9 8 42 42 H 0.97000 * 120.00089 * 0.02562 * 11 10 9 43 43 H 0.97000 * 120.00257 * 0.02562 * 13 12 11 44 44 H 0.96998 * 119.99535 * 179.97438 * 13 12 11 45 45 H 1.09001 * 109.68145 * 52.07548 * 15 2 1 46 46 H 1.09001 * 109.68444 * 172.62934 * 15 2 1 47 47 H 0.97002 * 120.00383 * 180.02562 * 20 19 17 48 48 H 1.08997 * 109.68310 * 290.77594 * 25 16 15 49 49 H 1.09005 * 109.67869 * 170.26376 * 25 16 15 50 50 H 1.09001 * 109.51044 * 67.59999 * 26 25 16 51 51 H 1.09000 * 109.51036 * 187.70217 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5552 2.1324 1.1974 5 6 1.8817 3.4225 1.4107 6 8 2.5781 4.0119 0.6115 7 6 1.3824 4.1324 2.6426 8 6 1.8934 5.5745 2.6426 9 6 1.3859 6.2954 3.8931 10 6 1.8963 7.7378 3.8927 11 7 1.4109 8.4279 5.0903 12 6 1.7379 9.7179 5.3038 13 7 1.2909 10.3529 6.4054 14 8 2.4352 10.3090 4.5022 15 6 2.0431 -0.7251 -1.2493 16 7 1.6979 -2.1517 -1.1336 17 6 1.0642 -2.8096 -2.1536 18 1 0.4524 -3.6739 -1.9411 19 6 1.2080 -2.3657 -3.4610 20 7 2.1883 -1.5449 -3.7733 21 14 0.0101 -2.9333 -4.7773 22 1 -1.3663 -2.5173 -4.4064 23 1 0.3782 -2.3207 -6.0789 24 1 0.0659 -4.4128 -4.8925 25 6 2.0541 -2.8493 0.1121 26 6 1.5404 -2.0208 1.2952 27 8 2.0074 -0.6758 1.1658 28 1 -0.3634 0.5123 0.8909 29 1 -0.3633 0.5154 -0.8891 30 1 -0.3634 -1.0277 -0.0018 31 1 3.1311 1.4413 -0.0018 32 1 1.6767 1.9567 -0.8891 33 1 0.9985 1.6609 1.8367 34 1 0.2924 4.1328 2.6450 35 1 1.7475 3.6179 3.5315 36 1 2.9834 5.5738 2.6404 37 1 1.5284 6.0892 1.7537 38 1 0.2959 6.2962 3.8949 39 1 1.7504 5.7809 4.7821 40 1 2.9864 7.7375 3.8906 41 1 1.5315 8.2521 3.0036 42 1 0.8549 7.9562 5.7300 43 1 0.7342 9.8815 7.0447 44 1 1.5265 11.2812 6.5592 45 1 1.5716 -0.3045 -2.1375 46 1 3.1251 -0.6138 -1.3200 47 1 2.2886 -1.2345 -4.6868 48 1 3.1372 -2.9520 0.1786 49 1 1.5904 -3.8357 0.1259 50 1 0.4505 -2.0289 1.2994 51 1 1.9113 -2.4478 2.2270 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108057739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:46 Heat of formation + Delta-G solvation = -105.248244 kcal Electronic energy + Delta-G solvation = -29858.980207 eV Core-core repulsion = 25600.602220 eV Total energy + Delta-G solvation = -4258.377987 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.16459 -39.81116 -38.82005 -36.40310 -34.94095 -34.34950 -34.23774 -33.49569 -31.79247 -31.27781 -29.49851 -27.97435 -26.53544 -25.74876 -24.10334 -23.25089 -21.80688 -21.50796 -21.08049 -20.15866 -18.72297 -18.58516 -17.70360 -17.17594 -16.80748 -16.47152 -15.94944 -15.65479 -15.42463 -15.12791 -15.06193 -14.63080 -14.55358 -14.37042 -14.08406 -13.78849 -13.53156 -13.40066 -13.05827 -12.75781 -12.68590 -12.46323 -12.01793 -11.95716 -11.71740 -11.60339 -11.46700 -11.21539 -11.02773 -10.93016 -10.82868 -10.70067 -10.67810 -10.33851 -10.29339 -10.12317 -10.01613 -9.74492 -9.53962 -9.40004 -9.06982 -8.80425 -8.55797 -6.76631 -5.86529 -3.30034 2.50609 2.79365 2.84910 3.31861 3.36213 3.39745 3.40154 4.07227 4.22217 4.41536 4.42763 4.60583 4.68590 4.97077 5.03699 5.12927 5.20250 5.31943 5.37733 5.42413 5.46985 5.50197 5.51581 5.62569 5.65833 5.88857 5.91348 5.93921 6.01443 6.05433 6.08478 6.10041 6.11934 6.28911 6.29840 6.43851 6.49136 6.56222 6.67933 6.74327 6.79855 7.04843 7.44509 7.54147 7.68009 7.69850 7.85382 8.23715 8.30633 8.39740 9.08469 9.71660 10.28922 11.21459 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.001632 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.930917 B =17154.595455 C =17731.476149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 C 0.139 3.861 4 N -0.719 5.719 5 C 0.506 3.494 6 O -0.546 6.546 7 C -0.139 4.139 8 C -0.101 4.101 9 C -0.130 4.130 10 C 0.135 3.865 11 N -0.746 5.746 12 C 0.703 3.297 13 N -0.870 5.870 14 O -0.594 6.594 15 C 0.160 3.840 16 N -0.590 5.590 17 C -0.256 4.256 18 H 0.068 0.932 19 C 0.005 3.995 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.282 1.282 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.384 6.384 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.401 0.599 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.396 0.604 43 H 0.396 0.604 44 H 0.414 0.586 45 H 0.096 0.904 46 H 0.029 0.971 47 H 0.257 0.743 48 H 0.025 0.975 49 H 0.061 0.939 50 H 0.048 0.952 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.382 14.388 21.920 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 C 0.015 3.985 4 N -0.370 5.370 5 C 0.292 3.708 6 O -0.423 6.423 7 C -0.179 4.179 8 C -0.140 4.140 9 C -0.168 4.168 10 C 0.011 3.989 11 N -0.402 5.402 12 C 0.400 3.600 13 N -0.438 5.438 14 O -0.471 6.471 15 C 0.033 3.967 16 N -0.314 5.314 17 C -0.386 4.386 18 H 0.085 0.915 19 C -0.194 4.194 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.208 1.208 25 C -0.018 4.018 26 C -0.032 4.032 27 O -0.304 6.304 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.236 0.764 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.230 0.770 43 H 0.224 0.776 44 H 0.246 0.754 45 H 0.114 0.886 46 H 0.047 0.953 47 H 0.067 0.933 48 H 0.043 0.957 49 H 0.079 0.921 50 H 0.066 0.934 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.095 15.281 20.460 26.040 hybrid contribution -1.463 -0.893 0.109 1.717 sum -6.558 14.389 20.569 25.944 Atomic orbital electron populations 1.22199 0.95773 1.03192 1.00684 1.22552 0.93534 0.90733 0.89480 1.21343 0.99865 0.89882 0.87376 1.46019 1.53494 1.11743 1.25748 1.20646 0.80545 0.81932 0.87705 1.90715 1.38119 1.66185 1.47317 1.21641 1.02481 0.96783 0.96982 1.21221 1.02089 0.93278 0.97388 1.21816 1.01375 0.94238 0.99409 1.21274 0.99601 0.91465 0.86591 1.45140 1.56990 1.11038 1.27037 1.16006 0.80183 0.81701 0.82070 1.43005 1.58589 1.17040 1.25144 1.90993 1.42736 1.66530 1.46873 1.21305 0.97814 0.83914 0.93677 1.44000 1.68687 1.04930 1.13780 1.19114 1.21856 1.12189 0.85401 0.91456 1.25035 0.97258 1.00062 0.97081 1.69999 1.29207 1.36639 1.18668 0.86360 0.80959 0.78352 0.81042 1.20999 1.21525 1.20839 1.21597 0.97553 0.95226 0.87387 1.23032 0.98279 0.83146 0.98724 1.87806 1.72995 1.25793 1.43805 0.93958 0.91925 0.90855 0.90952 0.90167 0.76390 0.89051 0.88964 0.90642 0.90668 0.91176 0.91152 0.91276 0.91273 0.77037 0.77632 0.75384 0.88564 0.95264 0.93332 0.95672 0.92069 0.93408 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 7.92 37.16 0.29 -2.37 16 2 C 0.08 1.41 0.76 -90.47 -0.07 1.34 16 3 C 0.14 2.34 4.82 -4.04 -0.02 2.32 16 4 N -0.72 -9.69 5.15 -60.29 -0.31 -10.00 16 5 C 0.51 6.78 7.83 -10.99 -0.09 6.69 16 6 O -0.55 -9.64 15.98 5.56 0.09 -9.55 16 7 C -0.14 -1.16 5.70 -27.89 -0.16 -1.31 16 8 C -0.10 -0.84 4.50 -26.73 -0.12 -0.96 16 9 C -0.13 -0.72 5.33 -26.73 -0.14 -0.86 16 10 C 0.13 1.01 5.67 -4.04 -0.02 0.99 16 11 N -0.75 -4.66 5.56 -65.22 -0.36 -5.03 16 12 C 0.70 6.21 8.84 -86.91 -0.77 5.44 16 13 N -0.87 -3.71 8.88 27.63 0.25 -3.46 16 14 O -0.59 -8.40 17.18 5.30 0.09 -8.31 16 15 C 0.16 3.67 4.12 -3.49 -0.01 3.65 16 16 N -0.59 -14.17 2.57 -171.76 -0.44 -14.62 16 17 C -0.26 -6.74 9.65 -15.06 -0.15 -6.89 16 18 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 19 C 0.00 0.13 4.95 -17.43 -0.09 0.04 16 20 N -0.90 -25.51 11.14 55.49 0.62 -24.89 16 21 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.11 2.19 6.73 -3.53 -0.02 2.17 16 26 C 0.05 0.77 6.60 37.31 0.25 1.02 16 27 O -0.38 -6.86 9.97 -35.23 -0.35 -7.21 16 28 H 0.04 0.57 6.87 -51.93 -0.36 0.21 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.33 6.12 -51.93 -0.32 1.02 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.40 4.61 7.20 -40.82 -0.29 4.31 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.40 1.17 8.49 -40.82 -0.35 0.82 16 43 H 0.40 0.36 8.84 -40.82 -0.36 0.00 16 44 H 0.41 1.50 8.93 -40.82 -0.36 1.13 16 45 H 0.10 2.45 6.14 -51.93 -0.32 2.13 16 46 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 50 H 0.05 0.77 6.25 -51.93 -0.32 0.45 16 51 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 407.66 15.07 6.14 6.14 Total: -1.00 -35.66 407.66 -8.99 -44.65 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -8.56 Total: 4.94 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -1.12 Total: 11.27 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.25 Total: -58.00 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.17 Total: -25.07 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.66 -8.99 -44.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108057739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.602 kcal (2) G-P(sol) polarization free energy of solvation -35.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds