Wall clock time and date at job start Wed Apr 1 2020 02:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.51448 * 2 1 4 4 N 1.46502 * 109.47082 * 60.09947 * 3 2 1 5 5 C 1.34774 * 120.00289 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99709 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00255 * 180.02562 * 5 4 3 8 8 C 1.53001 * 109.47048 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46984 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.46984 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.47082 * 180.02562 * 10 9 8 12 12 C 1.34782 * 119.99639 * 179.97438 * 11 10 9 13 13 N 1.34780 * 119.99471 * 179.97438 * 12 11 10 14 14 O 1.21576 * 120.00313 * 0.02562 * 12 11 10 15 15 C 1.53294 * 109.55683 * 239.87055 * 2 1 3 16 16 N 1.47231 * 108.40580 * 292.36272 * 15 2 1 17 17 C 1.36930 * 121.03478 * 129.45775 * 16 15 2 18 18 H 1.08002 * 120.00530 * 206.18179 * 17 16 15 19 19 C 1.38816 * 119.99608 * 26.18409 * 17 16 15 20 20 N 1.31615 * 120.00526 * 16.88476 * 19 17 16 21 21 Si 1.86806 * 119.99896 * 196.88547 * 19 17 16 22 22 H 1.48497 * 109.46975 * 59.99586 * 21 19 17 23 23 H 1.48495 * 109.47304 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47064 * 300.00118 * 21 19 17 25 25 C 1.47154 * 117.98080 * 309.48144 * 16 15 2 26 26 C 1.53298 * 108.41825 * 50.52276 * 25 16 15 27 27 O 1.42959 * 109.50925 * 120.09967 * 2 1 3 28 28 H 1.09004 * 109.47366 * 299.89914 * 1 2 3 29 29 H 1.09004 * 109.47010 * 59.89917 * 1 2 3 30 30 H 1.09003 * 109.47551 * 179.89846 * 1 2 3 31 31 H 1.09002 * 109.47344 * 180.09758 * 3 2 1 32 32 H 1.08999 * 109.46999 * 300.09957 * 3 2 1 33 33 H 0.97000 * 120.00089 * 0.02562 * 4 3 2 34 34 H 1.08999 * 109.47080 * 299.99449 * 7 5 4 35 35 H 1.08999 * 109.47266 * 59.99972 * 7 5 4 36 36 H 1.09002 * 109.47344 * 299.99746 * 8 7 5 37 37 H 1.09003 * 109.46888 * 60.00427 * 8 7 5 38 38 H 1.08999 * 109.47399 * 299.99741 * 9 8 7 39 39 H 1.08999 * 109.47011 * 60.00303 * 9 8 7 40 40 H 1.09002 * 109.47344 * 300.00098 * 10 9 8 41 41 H 1.09003 * 109.47486 * 60.00312 * 10 9 8 42 42 H 0.97000 * 120.00089 * 0.02562 * 11 10 9 43 43 H 0.97000 * 120.00257 * 0.02562 * 13 12 11 44 44 H 0.96998 * 119.99535 * 179.97438 * 13 12 11 45 45 H 1.09001 * 109.68145 * 52.07548 * 15 2 1 46 46 H 1.09001 * 109.68444 * 172.62934 * 15 2 1 47 47 H 0.97002 * 120.00383 * 180.02562 * 20 19 17 48 48 H 1.08997 * 109.68310 * 290.77594 * 25 16 15 49 49 H 1.09005 * 109.67869 * 170.26376 * 25 16 15 50 50 H 1.09001 * 109.51044 * 67.59999 * 26 25 16 51 51 H 1.09000 * 109.51036 * 187.70217 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5552 2.1324 1.1974 5 6 1.8817 3.4225 1.4107 6 8 2.5781 4.0119 0.6115 7 6 1.3824 4.1324 2.6426 8 6 1.8934 5.5745 2.6426 9 6 1.3859 6.2954 3.8931 10 6 1.8963 7.7378 3.8927 11 7 1.4109 8.4279 5.0903 12 6 1.7379 9.7179 5.3038 13 7 1.2909 10.3529 6.4054 14 8 2.4352 10.3090 4.5022 15 6 2.0431 -0.7251 -1.2493 16 7 1.6979 -2.1517 -1.1336 17 6 1.0642 -2.8096 -2.1536 18 1 0.4524 -3.6739 -1.9411 19 6 1.2080 -2.3657 -3.4610 20 7 2.1883 -1.5449 -3.7733 21 14 0.0101 -2.9333 -4.7773 22 1 -1.3663 -2.5173 -4.4064 23 1 0.3782 -2.3207 -6.0789 24 1 0.0659 -4.4128 -4.8925 25 6 2.0541 -2.8493 0.1121 26 6 1.5404 -2.0208 1.2952 27 8 2.0074 -0.6758 1.1658 28 1 -0.3634 0.5123 0.8909 29 1 -0.3633 0.5154 -0.8891 30 1 -0.3634 -1.0277 -0.0018 31 1 3.1311 1.4413 -0.0018 32 1 1.6767 1.9567 -0.8891 33 1 0.9985 1.6609 1.8367 34 1 0.2924 4.1328 2.6450 35 1 1.7475 3.6179 3.5315 36 1 2.9834 5.5738 2.6404 37 1 1.5284 6.0892 1.7537 38 1 0.2959 6.2962 3.8949 39 1 1.7504 5.7809 4.7821 40 1 2.9864 7.7375 3.8906 41 1 1.5315 8.2521 3.0036 42 1 0.8549 7.9562 5.7300 43 1 0.7342 9.8815 7.0447 44 1 1.5265 11.2812 6.5592 45 1 1.5716 -0.3045 -2.1375 46 1 3.1251 -0.6138 -1.3200 47 1 2.2886 -1.2345 -4.6868 48 1 3.1372 -2.9520 0.1786 49 1 1.5904 -3.8357 0.1259 50 1 0.4505 -2.0289 1.2994 51 1 1.9113 -2.4478 2.2270 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108057739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:45 Heat of formation + Delta-G solvation = -135.349120 kcal Electronic energy + Delta-G solvation = -29860.285479 eV Core-core repulsion = 25600.602220 eV Total energy + Delta-G solvation = -4259.683259 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 4.72 seconds Orbital eigenvalues (eV) -41.11620 -40.80455 -40.17889 -37.07930 -36.49503 -35.87496 -34.95496 -34.10442 -33.24546 -33.09464 -30.23114 -29.54953 -28.03371 -27.26615 -25.07570 -24.87711 -22.92699 -22.33104 -22.01745 -21.21033 -20.25782 -19.16393 -18.93205 -18.28864 -17.93595 -17.43844 -17.11942 -16.84844 -16.69450 -16.33663 -16.06374 -15.72605 -15.62077 -15.47380 -15.32756 -15.24032 -15.03697 -14.65889 -14.40071 -14.24985 -13.76273 -13.39773 -13.25756 -13.17400 -12.91202 -12.75194 -12.66847 -12.51069 -12.43242 -12.40226 -12.18277 -12.05377 -11.94547 -11.83068 -11.51337 -11.50234 -11.15169 -10.86595 -10.73542 -10.70186 -10.48688 -10.04407 -9.95157 -8.71686 -7.89457 -5.36300 1.46416 1.48375 1.55348 1.74606 1.96583 2.17829 2.27532 2.49293 2.80906 3.25391 3.51707 3.67709 3.83405 3.86346 3.98108 4.04304 4.07260 4.13007 4.36658 4.42311 4.44921 4.47875 4.57102 4.60103 4.67613 4.72906 4.79525 4.81814 4.89837 4.92248 4.99080 5.06372 5.07757 5.14310 5.22197 5.36168 5.37641 5.41506 5.48356 5.53735 5.54504 5.61565 5.93155 6.05491 6.29399 6.38363 6.65901 7.06967 7.14609 7.35914 7.67585 7.76682 8.30692 9.16001 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.001632 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.930917 B =17154.595455 C =17731.476149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.095 3.905 3 C 0.149 3.851 4 N -0.707 5.707 5 C 0.500 3.500 6 O -0.596 6.596 7 C -0.125 4.125 8 C -0.102 4.102 9 C -0.112 4.112 10 C 0.134 3.866 11 N -0.730 5.730 12 C 0.693 3.307 13 N -0.848 5.848 14 O -0.654 6.654 15 C 0.167 3.833 16 N -0.607 5.607 17 C -0.261 4.261 18 H 0.075 0.925 19 C -0.050 4.050 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.274 1.274 23 H -0.298 1.298 24 H -0.275 1.275 25 C 0.100 3.900 26 C 0.053 3.947 27 O -0.384 6.384 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.416 0.584 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.416 0.584 43 H 0.416 0.584 44 H 0.419 0.581 45 H 0.065 0.935 46 H -0.011 1.011 47 H 0.250 0.750 48 H 0.010 0.990 49 H 0.072 0.928 50 H 0.062 0.938 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.269 13.811 25.628 30.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.053 3.947 3 C 0.023 3.977 4 N -0.360 5.360 5 C 0.289 3.711 6 O -0.477 6.477 7 C -0.165 4.165 8 C -0.141 4.141 9 C -0.149 4.149 10 C 0.010 3.990 11 N -0.387 5.387 12 C 0.391 3.609 13 N -0.417 5.417 14 O -0.537 6.537 15 C 0.040 3.960 16 N -0.331 5.331 17 C -0.390 4.390 18 H 0.092 0.908 19 C -0.245 4.245 20 N -0.583 5.583 21 Si 0.795 3.205 22 H -0.200 1.200 23 H -0.225 1.225 24 H -0.201 1.201 25 C -0.025 4.025 26 C -0.024 4.024 27 O -0.303 6.303 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.254 0.746 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.253 0.747 43 H 0.247 0.753 44 H 0.252 0.748 45 H 0.083 0.917 46 H 0.007 0.993 47 H 0.059 0.941 48 H 0.028 0.972 49 H 0.090 0.910 50 H 0.080 0.920 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.057 14.653 24.293 29.492 hybrid contribution -0.498 -0.761 -0.994 1.348 sum -8.555 13.892 23.299 28.443 Atomic orbital electron populations 1.22101 0.93776 1.02814 1.02213 1.22167 0.94736 0.90542 0.87209 1.20955 0.98415 0.89571 0.88717 1.45863 1.53487 1.11919 1.24729 1.21673 0.79367 0.81453 0.88643 1.90705 1.40397 1.67161 1.49461 1.21685 1.04302 0.95657 0.94836 1.21185 1.00845 0.93872 0.98167 1.21664 1.02576 0.92116 0.98571 1.21175 0.98500 0.92918 0.86453 1.44916 1.56630 1.10273 1.26928 1.16328 0.79903 0.82275 0.82419 1.42789 1.57707 1.17184 1.23992 1.90954 1.45556 1.67991 1.49207 1.21073 0.95221 0.84442 0.95279 1.44257 1.68681 1.05507 1.14637 1.19491 1.21391 1.12049 0.86115 0.90772 1.25794 0.98785 1.00732 0.99192 1.70180 1.31167 1.38459 1.18515 0.85352 0.79142 0.78015 0.78022 1.20014 1.22482 1.20058 1.21838 0.96962 0.96442 0.87269 1.23106 0.99170 0.81739 0.98383 1.87817 1.73340 1.26421 1.42765 0.89943 0.92867 0.92084 0.93355 0.91478 0.74636 0.85713 0.85944 0.92847 0.92727 0.88820 0.88887 0.93363 0.93312 0.74673 0.75328 0.74842 0.91653 0.99274 0.94106 0.97163 0.90972 0.91954 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 7.92 71.98 0.57 -4.15 16 2 C 0.09 3.39 0.76 -10.70 -0.01 3.38 16 3 C 0.15 5.08 4.82 86.38 0.42 5.50 16 4 N -0.71 -17.79 5.15 -463.06 -2.39 -20.17 16 5 C 0.50 12.73 7.83 87.66 0.69 13.42 16 6 O -0.60 -21.57 15.98 -3.04 -0.05 -21.62 16 7 C -0.13 -1.64 5.70 29.85 0.17 -1.47 16 8 C -0.10 -1.55 4.50 30.60 0.14 -1.41 16 9 C -0.11 -0.89 5.33 30.60 0.16 -0.72 16 10 C 0.13 1.92 5.67 86.38 0.49 2.41 16 11 N -0.73 -7.82 5.56 -478.52 -2.66 -10.48 16 12 C 0.69 11.69 8.84 179.05 1.58 13.28 16 13 N -0.85 -5.69 8.88 -184.75 -1.64 -7.33 16 14 O -0.65 -19.08 17.18 -3.96 -0.07 -19.14 16 15 C 0.17 7.99 4.12 86.34 0.36 8.34 16 16 N -0.61 -29.51 2.57 -697.32 -1.79 -31.31 16 17 C -0.26 -13.82 9.65 84.04 0.81 -13.01 16 18 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 19 C -0.05 -2.72 4.95 84.86 0.42 -2.30 16 20 N -0.94 -55.40 11.14 21.65 0.24 -55.16 16 21 Si 0.97 43.97 29.59 68.60 2.03 46.00 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 25 C 0.10 3.95 6.73 86.35 0.58 4.53 16 26 C 0.05 1.62 6.60 72.08 0.48 2.09 16 27 O -0.38 -12.89 9.97 -148.98 -1.49 -14.38 16 28 H 0.08 1.89 6.87 -2.38 -0.02 1.88 16 29 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.06 2.08 6.12 -2.39 -0.01 2.06 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.42 7.93 7.20 -92.71 -0.67 7.27 16 34 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 37 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 38 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.42 1.03 8.49 -92.71 -0.79 0.24 16 43 H 0.42 -0.44 8.84 -92.71 -0.82 -1.26 16 44 H 0.42 2.44 8.93 -92.71 -0.83 1.61 16 45 H 0.07 3.52 6.14 -2.39 -0.01 3.51 16 46 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 47 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 48 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.07 2.65 7.96 -2.38 -0.02 2.63 16 50 H 0.06 1.76 6.25 -2.39 -0.01 1.75 16 51 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -84.32 407.66 -3.09 -87.41 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -2.13 Total: 16.29 kcal Atomic # 6 Polarization: 23.05 SS G_CDS: 6.85 Total: 29.90 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -8.24 Total: -124.45 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -1.60 Total: -55.15 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -84.32 -3.09 -87.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108057739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.938 kcal (2) G-P(sol) polarization free energy of solvation -84.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.72 seconds