Wall clock time and date at job start Wed Apr 1 2020 02:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34775 * 119.99961 * 2 1 4 4 O 1.21591 * 119.99929 * 0.02562 * 3 2 1 5 5 N 1.34768 * 120.00355 * 180.02562 * 3 2 1 6 6 C 1.46500 * 120.00400 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47422 * 60.00026 * 6 5 3 8 8 C 1.52999 * 109.47078 * 299.99784 * 6 5 3 9 9 C 1.50707 * 109.47522 * 180.02562 * 6 5 3 10 10 O 1.21282 * 120.00217 * 144.99720 * 9 6 5 11 11 N 1.34772 * 119.99501 * 324.99968 * 9 6 5 12 12 C 1.46502 * 119.99716 * 179.97438 * 11 9 6 13 13 C 1.53000 * 109.47269 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.55047 * 60.12739 * 13 12 11 15 15 C 1.53290 * 109.51494 * 180.25274 * 13 12 11 16 16 N 1.47232 * 108.40798 * 172.23175 * 15 13 12 17 17 C 1.36930 * 121.03328 * 129.46021 * 16 15 13 18 18 H 1.08002 * 120.00530 * 206.18598 * 17 16 15 19 19 C 1.38816 * 119.99608 * 26.18827 * 17 16 15 20 20 N 1.31615 * 120.00526 * 16.88476 * 19 17 16 21 21 Si 1.86806 * 119.99896 * 196.88547 * 19 17 16 22 22 H 1.48493 * 109.47161 * 89.99376 * 21 19 17 23 23 H 1.48497 * 109.47448 * 210.00216 * 21 19 17 24 24 H 1.48503 * 109.46954 * 330.00010 * 21 19 17 25 25 C 1.47154 * 117.98230 * 309.48797 * 16 15 13 26 26 C 1.53298 * 108.41825 * 50.51870 * 25 16 15 27 27 O 1.42959 * 109.51371 * 300.00367 * 13 12 11 28 28 H 1.08994 * 109.47327 * 299.98925 * 1 2 3 29 29 H 1.08999 * 109.47792 * 59.99778 * 1 2 3 30 30 H 1.09005 * 109.46784 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00070 * 180.02562 * 2 1 3 32 32 H 0.97005 * 120.00005 * 0.02562 * 5 3 2 33 33 H 1.08994 * 109.47562 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.46631 * 300.00291 * 7 6 5 35 35 H 1.08997 * 109.47145 * 60.00125 * 7 6 5 36 36 H 1.09002 * 109.47574 * 300.00569 * 8 6 5 37 37 H 1.09000 * 109.46954 * 59.99721 * 8 6 5 38 38 H 1.08994 * 109.47508 * 179.97438 * 8 6 5 39 39 H 0.97000 * 120.00195 * 359.97438 * 11 9 6 40 40 H 1.09002 * 109.46877 * 59.99845 * 12 11 9 41 41 H 1.08999 * 109.47195 * 299.99813 * 12 11 9 42 42 H 1.09000 * 109.47604 * 299.87595 * 14 13 12 43 43 H 1.09004 * 109.47201 * 59.87360 * 14 13 12 44 44 H 1.09000 * 109.47333 * 179.87598 * 14 13 12 45 45 H 1.09001 * 109.68414 * 291.94993 * 15 13 12 46 46 H 1.09001 * 109.68139 * 52.50357 * 15 13 12 47 47 H 0.97002 * 120.00383 * 180.02562 * 20 19 17 48 48 H 1.08997 * 109.68310 * 290.77188 * 25 16 15 49 49 H 1.09005 * 109.67869 * 170.25970 * 25 16 15 50 50 H 1.09001 * 109.51044 * 67.59999 * 26 25 16 51 51 H 1.09000 * 109.51251 * 187.75009 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4865 1.1673 -0.0005 6 6 4.2190 2.4360 0.0000 7 6 3.8499 3.2375 1.2499 8 6 3.8489 3.2391 -1.2485 9 6 5.7007 2.1607 -0.0013 10 8 6.4537 2.8963 -0.6037 11 7 6.1890 1.0970 0.6668 12 6 7.6293 0.8291 0.6650 13 6 7.9156 -0.4262 1.4917 14 6 7.1777 -1.6199 0.8823 15 6 9.4231 -0.7039 1.4957 16 7 9.6919 -1.7976 2.4439 17 6 10.4388 -2.8843 2.0749 18 1 10.2941 -3.8328 2.5708 19 6 11.3821 -2.7669 1.0632 20 7 11.8000 -1.5766 0.6879 21 14 12.0583 -4.2983 0.2343 22 1 11.2109 -4.6433 -0.9352 23 1 13.4487 -4.0424 -0.2200 24 1 12.0528 -5.4269 1.1996 25 6 9.1329 -1.6881 3.8008 26 6 7.6394 -1.3625 3.6845 27 8 7.4705 -0.2249 2.8352 28 1 -0.3634 0.5136 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 3.9716 0.3272 -0.0013 33 1 4.3945 4.1816 1.2502 34 1 2.7783 3.4366 1.2505 35 1 4.1136 2.6654 2.1394 36 1 4.1118 2.6681 -2.1390 37 1 2.7773 3.4382 -1.2480 38 1 4.3935 4.1832 -1.2480 39 1 5.5869 0.5089 1.1489 40 1 8.1573 1.6780 1.0994 41 1 7.9690 0.6752 -0.3592 42 1 6.1055 -1.4237 0.8838 43 1 7.5176 -1.7728 -0.1421 44 1 7.3843 -2.5138 1.4709 45 1 9.7451 -0.9972 0.4965 46 1 9.9606 0.1919 1.8068 47 1 12.4588 -1.4945 -0.0193 48 1 9.6411 -0.8915 4.3440 49 1 9.2626 -2.6330 4.3286 50 1 7.1128 -2.2164 3.2583 51 1 7.2368 -1.1419 4.6731 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108417506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:54 Heat of formation + Delta-G solvation = -76.402381 kcal Electronic energy + Delta-G solvation = -32182.247059 eV Core-core repulsion = 27925.119922 eV Total energy + Delta-G solvation = -4257.127136 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.95391 -39.66909 -38.89480 -36.00789 -35.11882 -34.68937 -34.40571 -31.78153 -31.55730 -31.31852 -28.04187 -27.37230 -26.93533 -26.56730 -25.82228 -23.37820 -23.20405 -21.33504 -21.11674 -19.84039 -19.14034 -18.71035 -17.74861 -17.10538 -16.00570 -15.90959 -15.74817 -15.55023 -15.29378 -14.97167 -14.62776 -14.41298 -14.31768 -14.09301 -13.91481 -13.66611 -13.58353 -13.18955 -13.11577 -12.79058 -12.57538 -12.51398 -12.33904 -12.15367 -11.98095 -11.92520 -11.68891 -11.42551 -11.27422 -11.08824 -10.89180 -10.74728 -10.41697 -10.38580 -10.30118 -10.06017 -9.73965 -9.58539 -9.56812 -9.21065 -9.13284 -8.96816 -8.60419 -6.81314 -5.90613 -3.34313 2.21386 2.71566 2.95087 3.10034 3.29351 3.36580 3.38271 3.91743 4.14806 4.37714 4.51193 4.84922 4.88830 4.90272 5.06205 5.22896 5.27025 5.37256 5.42859 5.45282 5.53478 5.56421 5.63880 5.68116 5.79644 5.82250 5.85433 5.91945 5.98893 6.01220 6.05204 6.16875 6.19561 6.22344 6.28253 6.33086 6.46478 6.54468 6.58024 6.65948 6.74678 6.99671 7.39122 7.47484 7.64774 7.68612 7.79188 8.15713 8.26396 8.33206 9.04333 9.67344 10.24450 11.17361 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.015373 B = 0.002794 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.967673 B =10018.284365 C =10355.203388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.752 5.752 3 C 0.709 3.291 4 O -0.582 6.582 5 N -0.741 5.741 6 C 0.181 3.819 7 C -0.160 4.160 8 C -0.150 4.150 9 C 0.513 3.487 10 O -0.528 6.528 11 N -0.714 5.714 12 C 0.137 3.863 13 C 0.077 3.923 14 C -0.161 4.161 15 C 0.160 3.840 16 N -0.590 5.590 17 C -0.256 4.256 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.384 6.384 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.398 0.602 32 H 0.396 0.604 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.400 0.600 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.030 0.970 47 H 0.256 0.744 48 H 0.026 0.974 49 H 0.061 0.939 50 H 0.048 0.952 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.963 1.922 -0.124 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.407 5.407 3 C 0.409 3.591 4 O -0.460 6.460 5 N -0.399 5.399 6 C 0.092 3.908 7 C -0.218 4.218 8 C -0.208 4.208 9 C 0.296 3.704 10 O -0.403 6.403 11 N -0.366 5.366 12 C 0.014 3.986 13 C 0.036 3.964 14 C -0.219 4.219 15 C 0.033 3.967 16 N -0.314 5.314 17 C -0.385 4.385 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.018 4.018 26 C -0.032 4.032 27 O -0.303 6.303 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.231 0.769 32 H 0.231 0.769 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.115 0.885 46 H 0.048 0.952 47 H 0.066 0.934 48 H 0.044 0.956 49 H 0.080 0.920 50 H 0.066 0.934 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.881 3.632 -0.611 20.219 hybrid contribution 0.852 -2.249 -0.191 2.413 sum -19.029 1.383 -0.802 19.096 Atomic orbital electron populations 1.21390 0.78027 1.02001 1.02285 1.44963 1.07852 1.07207 1.80676 1.15859 0.81370 0.84370 0.77489 1.90874 1.67782 1.29909 1.57404 1.45315 1.05004 1.08885 1.80704 1.20422 0.86999 0.84366 0.99031 1.22205 1.04758 0.99952 0.94919 1.22070 1.03776 1.00213 0.94749 1.20438 0.89738 0.81146 0.79042 1.90741 1.59014 1.47151 1.43365 1.46080 1.09672 1.28462 1.52382 1.21431 0.79692 0.97377 1.00126 1.22557 0.98901 0.92851 0.82056 1.22208 0.97832 0.99765 1.02057 1.21303 0.86981 0.91073 0.97340 1.44013 1.59733 1.21815 1.05839 1.19163 1.13286 0.88080 1.17940 0.91369 1.25045 0.96515 0.96496 1.01432 1.70008 1.31930 1.21276 1.31263 0.86274 0.78107 0.82584 0.79711 1.21362 1.21652 1.20426 1.21597 0.91943 0.99357 0.88861 1.23042 0.98134 0.88777 0.93218 1.87819 1.84213 1.37658 1.20660 0.92309 0.92365 0.90696 0.76876 0.76942 0.90990 0.88989 0.92050 0.92465 0.89570 0.90602 0.76464 0.90595 0.89830 0.94289 0.91776 0.90672 0.88512 0.95204 0.93370 0.95628 0.92036 0.93404 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.65 10.70 59.84 0.64 1.29 16 2 N -0.75 -5.48 5.72 -72.08 -0.41 -5.89 16 3 C 0.71 7.48 7.98 -86.93 -0.69 6.79 16 4 O -0.58 -7.96 12.55 5.29 0.07 -7.89 16 5 N -0.74 -7.17 4.86 -53.50 -0.26 -7.43 16 6 C 0.18 2.14 0.98 -132.97 -0.13 2.01 16 7 C -0.16 -1.84 8.38 37.16 0.31 -1.52 16 8 C -0.15 -1.83 7.93 37.16 0.29 -1.53 16 9 C 0.51 7.20 6.65 -10.98 -0.07 7.13 16 10 O -0.53 -9.30 16.09 5.56 0.09 -9.21 16 11 N -0.71 -9.41 4.85 -60.29 -0.29 -9.70 16 12 C 0.14 2.20 4.82 -4.04 -0.02 2.18 16 13 C 0.08 1.34 0.76 -90.47 -0.07 1.27 16 14 C -0.16 -2.48 7.92 37.16 0.29 -2.19 16 15 C 0.16 3.56 4.12 -3.49 -0.01 3.54 16 16 N -0.59 -13.81 2.57 -171.76 -0.44 -14.25 16 17 C -0.26 -6.58 9.65 -15.06 -0.15 -6.72 16 18 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 19 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 20 N -0.90 -25.04 11.14 55.49 0.62 -24.42 16 21 Si 0.90 20.74 29.59 -169.99 -5.03 15.71 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.11 2.14 6.73 -3.53 -0.02 2.12 16 26 C 0.05 0.75 6.60 37.31 0.25 0.99 16 27 O -0.38 -6.61 9.97 -35.23 -0.35 -6.96 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.40 1.88 8.84 -40.82 -0.36 1.52 16 32 H 0.40 3.13 7.25 -40.82 -0.30 2.83 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.13 6.16 -51.93 -0.32 0.81 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.09 6.16 -51.93 -0.32 0.77 16 38 H 0.08 0.94 7.87 -51.93 -0.41 0.53 16 39 H 0.40 4.56 5.95 -40.82 -0.24 4.31 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.04 0.47 6.88 -51.93 -0.36 0.11 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.29 6.11 -51.93 -0.32 0.97 16 45 H 0.10 2.39 6.14 -51.93 -0.32 2.07 16 46 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 48 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 1.15 7.96 -51.93 -0.41 0.73 16 50 H 0.05 0.74 6.25 -51.93 -0.32 0.42 16 51 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -32.08 396.31 -7.81 -39.89 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -8.30 Total: 8.81 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 0.53 Total: 15.38 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -0.79 Total: -61.69 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.20 Total: -24.07 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.08 -7.81 -39.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108417506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.512 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds