Wall clock time and date at job start Wed Apr 1 2020 02:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34773 * 120.00255 * 2 1 4 4 O 1.21588 * 120.00114 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99957 * 179.97438 * 3 2 1 6 6 C 1.46496 * 119.99868 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46848 * 60.00672 * 6 5 3 8 8 C 1.52998 * 109.47449 * 300.00522 * 6 5 3 9 9 C 1.50701 * 109.47082 * 180.02562 * 6 5 3 10 10 O 1.21278 * 120.00424 * 145.00496 * 9 6 5 11 11 N 1.34776 * 119.99722 * 325.00205 * 9 6 5 12 12 C 1.46502 * 119.99867 * 179.97438 * 11 9 6 13 13 C 1.53003 * 109.47217 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.51583 * 304.90157 * 13 12 11 15 15 C 1.53294 * 109.55349 * 184.77136 * 13 12 11 16 16 N 1.47157 * 108.38466 * 187.74987 * 15 13 12 17 17 C 1.36936 * 120.98274 * 230.55976 * 16 15 13 18 18 H 1.08003 * 119.99920 * 153.29946 * 17 16 15 19 19 C 1.38813 * 120.00057 * 333.29766 * 17 16 15 20 20 N 1.31618 * 119.99580 * 343.56028 * 19 17 16 21 21 Si 1.86796 * 119.99837 * 163.56160 * 19 17 16 22 22 H 1.48503 * 109.47298 * 59.99890 * 21 19 17 23 23 H 1.48500 * 109.46871 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47355 * 299.99676 * 21 19 17 25 25 C 1.47154 * 118.03367 * 50.53748 * 16 15 13 26 26 C 1.53295 * 108.38488 * 309.46343 * 25 16 15 27 27 O 1.42966 * 109.50947 * 65.00361 * 13 12 11 28 28 H 1.08993 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47118 * 300.00105 * 1 2 3 30 30 H 1.09002 * 109.46531 * 60.00072 * 1 2 3 31 31 H 0.97000 * 119.99401 * 179.97438 * 2 1 3 32 32 H 0.97000 * 119.99927 * 0.02562 * 5 3 2 33 33 H 1.09001 * 109.46992 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47392 * 299.99734 * 7 6 5 35 35 H 1.09003 * 109.47725 * 59.99977 * 7 6 5 36 36 H 1.09002 * 109.47130 * 300.00140 * 8 6 5 37 37 H 1.09001 * 109.47397 * 60.00039 * 8 6 5 38 38 H 1.09001 * 109.47134 * 180.02562 * 8 6 5 39 39 H 0.96999 * 120.00365 * 0.02562 * 11 9 6 40 40 H 1.08999 * 109.46968 * 60.00570 * 12 11 9 41 41 H 1.08993 * 109.47523 * 299.99941 * 12 11 9 42 42 H 1.08994 * 109.47437 * 180.10074 * 14 13 12 43 43 H 1.08998 * 109.46576 * 300.09989 * 14 13 12 44 44 H 1.09001 * 109.46654 * 60.09783 * 14 13 12 45 45 H 1.08993 * 109.68651 * 307.47239 * 15 13 12 46 46 H 1.09000 * 109.68171 * 67.99505 * 15 13 12 47 47 H 0.97005 * 119.99361 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.68106 * 189.74469 * 25 16 15 49 49 H 1.08998 * 109.67966 * 69.18562 * 25 16 15 50 50 H 1.08999 * 109.51768 * 172.22541 * 26 25 16 51 51 H 1.08995 * 109.51360 * 292.33078 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5311 2.2202 0.0005 5 7 3.4868 1.1671 0.0005 6 6 4.2193 2.4357 0.0000 7 6 3.8493 3.2387 1.2486 8 6 3.8501 3.2373 -1.2499 9 6 5.7009 2.1603 0.0001 10 8 6.4544 2.8951 -0.6026 11 7 6.1886 1.0974 0.6700 12 6 7.6289 0.8293 0.6697 13 6 7.9144 -0.4249 1.4982 14 6 7.3284 -0.2549 2.9013 15 6 9.4289 -0.6398 1.5985 16 7 9.6715 -1.9441 2.2352 17 6 10.5258 -2.0612 3.2989 18 1 10.3910 -2.8588 4.0146 19 6 11.5653 -1.1549 3.4574 20 7 11.9355 -0.3953 2.4483 21 14 12.4384 -1.0134 5.1026 22 1 13.0464 -2.3218 5.4545 23 1 13.5028 0.0179 5.0110 24 1 11.4605 -0.6244 6.1502 25 6 8.9683 -3.1187 1.6954 26 6 7.4763 -2.7830 1.5905 27 8 7.3187 -1.5605 0.8662 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.9500 -0.8401 0.0004 32 1 3.9717 0.3270 0.0005 33 1 4.3946 4.1825 1.2484 34 1 2.7776 3.4380 1.2482 35 1 4.1123 2.6678 2.1391 36 1 4.1137 2.6652 -2.1394 37 1 2.7785 3.4366 -1.2504 38 1 4.3955 4.1811 -1.2505 39 1 5.5860 0.5095 1.1518 40 1 8.1566 1.6787 1.1034 41 1 7.9694 0.6742 -0.3540 42 1 7.5337 -1.1480 3.4915 43 1 7.7831 0.6110 3.3824 44 1 6.2509 -0.1066 2.8294 45 1 9.8678 -0.6311 0.6008 46 1 9.8729 0.1520 2.2018 47 1 12.6616 0.2383 2.5592 48 1 9.1072 -3.9687 2.3635 49 1 9.3608 -3.3595 0.7075 50 1 6.9584 -3.5861 1.0661 51 1 7.0570 -2.6713 2.5903 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108417507.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:59 Heat of formation + Delta-G solvation = -75.875523 kcal Electronic energy + Delta-G solvation = -32181.092533 eV Core-core repulsion = 27923.988243 eV Total energy + Delta-G solvation = -4257.104290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.94995 -39.67295 -38.89687 -36.00478 -35.13434 -34.67927 -34.41705 -31.75394 -31.55155 -31.31569 -28.03975 -27.38857 -26.92122 -26.57369 -25.81925 -23.38213 -23.21951 -21.32162 -21.10319 -19.83641 -19.12623 -18.69401 -17.77317 -17.10052 -16.04304 -15.83980 -15.71743 -15.56860 -15.25274 -15.06570 -14.64776 -14.45384 -14.24228 -14.11746 -13.91874 -13.64381 -13.56991 -13.16782 -13.11780 -12.80084 -12.57119 -12.48241 -12.35683 -12.15757 -12.04713 -11.87803 -11.67088 -11.43301 -11.26783 -11.07638 -10.87538 -10.74251 -10.41226 -10.37887 -10.33171 -10.05661 -9.73572 -9.59279 -9.56289 -9.19829 -9.13061 -8.98273 -8.59613 -6.80177 -5.90256 -3.34430 2.22307 2.71963 2.96211 3.09357 3.30746 3.37348 3.37868 3.93456 4.14330 4.38328 4.50301 4.83671 4.89117 4.90031 5.06325 5.23412 5.27897 5.38345 5.42505 5.45374 5.53095 5.57580 5.61869 5.67669 5.79827 5.82540 5.85296 5.92099 5.99223 6.01327 6.04854 6.17026 6.19055 6.22517 6.28678 6.35472 6.46649 6.56147 6.58136 6.67034 6.74624 6.99570 7.39289 7.46662 7.64823 7.70155 7.78211 8.15230 8.27359 8.34280 9.04922 9.67780 10.24799 11.17767 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.016773 B = 0.002809 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.968134 B = 9965.951450 C =10738.125748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.751 5.751 3 C 0.709 3.291 4 O -0.583 6.583 5 N -0.741 5.741 6 C 0.181 3.819 7 C -0.160 4.160 8 C -0.150 4.150 9 C 0.513 3.487 10 O -0.527 6.527 11 N -0.715 5.715 12 C 0.137 3.863 13 C 0.078 3.922 14 C -0.162 4.162 15 C 0.160 3.840 16 N -0.590 5.590 17 C -0.257 4.257 18 H 0.068 0.932 19 C 0.005 3.995 20 N -0.901 5.901 21 Si 0.904 3.096 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.283 1.283 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.385 6.385 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.399 0.601 32 H 0.398 0.602 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.399 0.601 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.030 0.970 46 H 0.096 0.904 47 H 0.257 0.743 48 H 0.061 0.939 49 H 0.026 0.974 50 H 0.080 0.920 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.163 -0.257 -3.424 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.407 5.407 3 C 0.409 3.591 4 O -0.461 6.461 5 N -0.400 5.400 6 C 0.091 3.909 7 C -0.219 4.219 8 C -0.208 4.208 9 C 0.296 3.704 10 O -0.402 6.402 11 N -0.367 5.367 12 C 0.014 3.986 13 C 0.037 3.963 14 C -0.219 4.219 15 C 0.034 3.966 16 N -0.314 5.314 17 C -0.386 4.386 18 H 0.085 0.915 19 C -0.194 4.194 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.210 1.210 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.305 6.305 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.232 0.768 32 H 0.233 0.767 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.114 0.886 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.044 0.956 50 H 0.098 0.902 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.086 1.386 -4.027 20.533 hybrid contribution 0.965 -1.246 1.317 2.054 sum -19.121 0.139 -2.709 19.313 Atomic orbital electron populations 1.21389 0.78051 1.01992 1.02263 1.44966 1.07833 1.07239 1.80650 1.15862 0.81383 0.84362 0.77486 1.90871 1.67817 1.29916 1.57462 1.45330 1.05008 1.08960 1.80658 1.20413 0.87019 0.84414 0.99010 1.22213 1.04853 0.99934 0.94859 1.22069 1.03761 1.00213 0.94757 1.20436 0.89738 0.81202 0.78978 1.90740 1.58961 1.47382 1.43152 1.46133 1.09701 1.28308 1.52603 1.21416 0.79636 0.96248 1.01336 1.22562 0.97932 0.84712 0.91108 1.22205 0.98514 1.03719 0.97475 1.21279 0.87226 0.90240 0.97878 1.43980 1.50349 1.00954 1.36087 1.19105 1.05519 1.14073 0.99922 0.91474 1.25054 0.96386 1.00517 0.97454 1.69997 1.29341 1.26358 1.28799 0.86353 0.79063 0.77578 0.83678 1.20833 1.21507 1.20952 1.21593 0.91004 0.91587 0.97547 1.23040 0.98229 0.85972 0.95960 1.87801 1.77748 1.16202 1.48743 0.90695 0.92336 0.92376 0.76820 0.76699 0.90958 0.88928 0.92212 0.92450 0.89567 0.90616 0.76482 0.89759 0.90565 0.90697 0.91772 0.94153 0.95209 0.88556 0.93310 0.92041 0.95645 0.90177 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.66 10.70 59.85 0.64 1.30 16 2 N -0.75 -5.54 5.72 -72.07 -0.41 -5.95 16 3 C 0.71 7.53 7.98 -86.92 -0.69 6.84 16 4 O -0.58 -7.98 12.55 5.29 0.07 -7.92 16 5 N -0.74 -7.27 4.86 -53.51 -0.26 -7.53 16 6 C 0.18 2.13 0.98 -132.98 -0.13 2.00 16 7 C -0.16 -1.81 8.38 37.16 0.31 -1.49 16 8 C -0.15 -1.83 7.93 37.16 0.29 -1.54 16 9 C 0.51 7.19 6.65 -10.99 -0.07 7.12 16 10 O -0.53 -9.29 16.09 5.56 0.09 -9.20 16 11 N -0.71 -9.40 4.89 -60.29 -0.29 -9.70 16 12 C 0.14 2.20 4.85 -4.04 -0.02 2.18 16 13 C 0.08 1.35 0.78 -90.47 -0.07 1.28 16 14 C -0.16 -2.58 7.86 37.16 0.29 -2.29 16 15 C 0.16 3.58 4.11 -3.53 -0.01 3.56 16 16 N -0.59 -13.82 2.56 -171.83 -0.44 -14.26 16 17 C -0.26 -6.64 9.65 -15.06 -0.15 -6.78 16 18 H 0.07 1.70 7.88 -52.48 -0.41 1.28 16 19 C 0.01 0.13 4.95 -17.43 -0.09 0.05 16 20 N -0.90 -25.12 11.14 55.49 0.62 -24.50 16 21 Si 0.90 20.85 29.58 -169.99 -5.03 15.82 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.11 2.13 6.73 -3.53 -0.02 2.10 16 26 C 0.05 0.73 6.60 37.31 0.25 0.97 16 27 O -0.39 -6.46 10.17 -35.23 -0.36 -6.82 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.40 1.95 8.84 -40.82 -0.36 1.59 16 32 H 0.40 3.30 7.25 -40.82 -0.30 3.01 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.12 6.16 -51.93 -0.32 0.80 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.10 6.17 -51.93 -0.32 0.78 16 38 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 39 H 0.40 4.52 5.74 -40.82 -0.23 4.29 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.07 1.32 6.11 -51.93 -0.32 1.00 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.04 0.53 6.59 -51.93 -0.34 0.18 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.10 2.39 6.16 -51.93 -0.32 2.07 16 47 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 49 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 51 H 0.05 0.74 6.26 -51.93 -0.32 0.41 16 LS Contribution 396.06 15.07 5.97 5.97 Total: -1.00 -31.94 396.06 -7.80 -39.74 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -8.28 Total: 9.03 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 0.53 Total: 15.30 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.79 Total: -61.93 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.20 Total: -23.94 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.94 -7.80 -39.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108417507.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.134 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds