Wall clock time and date at job start Wed Apr 1 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47224 * 2 1 4 4 C 1.38228 * 119.99967 * 90.00515 * 3 2 1 5 5 C 1.38235 * 120.00313 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99721 * 359.97201 * 5 4 3 7 7 C 1.50706 * 119.99747 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47092 * 90.00346 * 7 6 5 9 9 C 1.50696 * 109.47047 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99974 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99943 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99807 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.55755 * 33.10298 * 12 11 9 14 14 C 1.54860 * 110.62184 * 155.99805 * 12 11 9 15 15 C 1.55847 * 103.44034 * 118.49562 * 14 12 11 16 16 H 1.09002 * 115.56132 * 158.81387 * 15 14 12 17 17 C 1.55854 * 105.06084 * 288.17371 * 15 14 12 18 18 C 1.54847 * 103.44688 * 71.82866 * 17 15 14 19 19 C 1.55842 * 110.62916 * 270.02645 * 12 11 9 20 20 H 1.08996 * 115.56236 * 82.69935 * 19 12 11 21 21 N 1.50230 * 101.05491 * 32.93561 * 15 14 12 22 22 C 1.36937 * 130.84035 * 126.06812 * 21 15 14 23 23 H 1.08000 * 120.00157 * 179.97438 * 22 21 15 24 24 C 1.38810 * 119.99849 * 359.97438 * 22 21 15 25 25 N 1.31620 * 119.99912 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 120.00136 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46940 * 89.99856 * 26 24 22 28 28 H 1.48496 * 109.47251 * 210.00246 * 26 24 22 29 29 H 1.48498 * 109.46887 * 330.00022 * 26 24 22 30 30 C 1.38228 * 119.99996 * 0.28327 * 6 5 4 31 31 C 1.38237 * 120.00135 * 359.50477 * 30 6 5 32 32 H 1.09002 * 109.47315 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47078 * 299.99414 * 1 2 3 34 34 H 1.08994 * 109.47807 * 59.99785 * 1 2 3 35 35 H 1.09003 * 109.46830 * 240.00128 * 2 1 3 36 36 H 1.08998 * 109.47555 * 120.00665 * 2 1 3 37 37 H 1.08000 * 120.00132 * 359.97438 * 4 3 2 38 38 H 1.08004 * 120.00431 * 179.97438 * 5 4 3 39 39 H 1.09004 * 109.46670 * 209.99969 * 7 6 5 40 40 H 1.08997 * 109.47214 * 329.99704 * 7 6 5 41 41 H 1.08999 * 109.46901 * 300.00103 * 8 7 6 42 42 H 1.09002 * 109.46747 * 59.99565 * 8 7 6 43 43 H 0.96999 * 119.99652 * 0.02562 * 11 9 8 44 44 H 1.09000 * 110.62346 * 236.97553 * 14 12 11 45 45 H 1.08996 * 110.62835 * 0.02562 * 14 12 11 46 46 H 1.09002 * 110.62126 * 190.31773 * 17 15 14 47 47 H 1.08995 * 110.62270 * 313.33658 * 17 15 14 48 48 H 1.08998 * 110.62460 * 241.51356 * 18 17 15 49 49 H 1.08993 * 110.76424 * 118.55268 * 18 17 15 50 50 H 0.97008 * 119.99829 * 179.97438 * 25 24 22 51 51 H 1.07999 * 120.00083 * 179.72299 * 30 6 5 52 52 H 1.07998 * 120.00607 * 180.27717 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0723 1.1971 5 6 2.7241 3.3754 1.1972 6 6 2.9555 4.0268 0.0000 7 6 3.4590 5.4473 0.0001 8 6 4.9890 5.4460 0.0006 9 6 5.4924 6.8664 0.0000 10 8 4.7050 7.7888 -0.0012 11 7 6.8177 7.1116 0.0009 12 6 7.3071 8.4924 -0.0002 13 1 6.6286 9.1394 0.5559 14 6 8.7368 8.5649 0.5905 15 6 9.5898 9.1150 -0.5921 16 1 10.5355 9.5800 -0.3134 17 6 9.6775 7.9382 -1.6101 18 6 8.2479 7.8657 -2.2007 19 6 7.4911 9.0086 -1.4591 20 1 6.5883 9.3799 -1.9440 21 7 8.5945 10.0111 -1.2728 22 6 8.6701 11.3341 -1.6181 23 1 7.8364 11.8120 -2.1110 24 6 9.8182 12.0609 -1.3345 25 7 10.8344 11.4783 -0.7343 26 14 9.9215 13.8655 -1.8061 27 1 9.4161 14.6994 -0.6862 28 1 11.3345 14.2226 -2.0908 29 1 9.0960 14.1089 -3.0162 30 6 2.7200 3.3770 -1.1971 31 6 2.2628 2.0724 -1.1972 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8932 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8899 37 1 2.0825 1.5633 2.1324 38 1 2.9038 3.8847 2.1325 39 1 3.0963 5.9612 -0.8901 40 1 3.0957 5.9615 0.8898 41 1 5.3516 4.9319 0.8907 42 1 5.3521 4.9318 -0.8892 43 1 7.4474 6.3738 0.0015 44 1 8.7679 9.2500 1.4376 45 1 9.0818 7.5734 0.8838 46 1 10.4049 8.1596 -2.3911 47 1 9.9302 7.0082 -1.1009 48 1 7.7916 6.8997 -1.9844 49 1 8.2638 8.0497 -3.2749 50 1 11.6368 11.9862 -0.5364 51 1 2.8965 3.8874 -2.1324 52 1 2.0831 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110088545.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:49 Heat of formation + Delta-G solvation = 12.966954 kcal Electronic energy + Delta-G solvation = -29198.509059 eV Core-core repulsion = 25356.106531 eV Total energy + Delta-G solvation = -3842.402528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -40.13287 -39.68588 -38.36356 -35.35099 -33.87795 -32.69310 -32.27419 -31.14270 -29.56271 -29.12316 -28.85024 -27.44694 -25.16920 -24.09646 -22.95427 -22.80548 -21.32900 -20.72622 -20.20476 -19.48442 -18.52836 -17.25609 -16.85808 -16.17020 -16.09929 -15.42517 -15.30806 -15.17873 -14.84305 -14.43524 -14.09806 -14.03944 -13.91539 -13.60639 -13.57856 -13.36525 -12.93126 -12.52369 -12.40897 -12.20375 -11.98956 -11.75525 -11.71388 -11.65038 -11.46741 -11.22270 -11.04771 -11.01980 -10.94631 -10.90429 -10.88273 -10.82685 -10.21709 -10.09382 -9.85224 -9.61108 -9.34481 -9.23523 -9.13534 -8.92793 -8.70081 -8.47465 -6.90755 -5.72367 -3.10292 1.09633 1.18996 2.91328 3.39275 3.41431 3.45546 3.47013 3.61628 4.41823 4.46299 4.50795 4.66985 4.77631 4.79109 4.94577 4.98723 5.04097 5.15716 5.19197 5.22093 5.29291 5.29875 5.39036 5.48714 5.51910 5.59063 5.62392 5.69807 5.76166 5.82302 5.85224 5.85940 5.91861 5.97963 6.07581 6.07844 6.13077 6.21403 6.32189 6.34018 6.37826 6.47196 6.54592 6.60854 6.71005 6.79970 6.82777 6.97409 7.00861 7.28435 7.53160 7.76067 7.88241 8.17570 8.55075 9.10971 9.73516 10.53981 11.37256 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.031364 B = 0.001798 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.515899 B =15568.907912 C =15720.355575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.082 4.082 7 C -0.065 4.065 8 C -0.134 4.134 9 C 0.506 3.494 10 O -0.545 6.545 11 N -0.713 5.713 12 C 0.126 3.874 13 H 0.083 0.917 14 C -0.142 4.142 15 C 0.154 3.846 16 H 0.154 0.846 17 C -0.136 4.136 18 C -0.130 4.130 19 C 0.128 3.872 20 H 0.084 0.916 21 N -0.591 5.591 22 C -0.209 4.209 23 H 0.079 0.921 24 C -0.013 4.013 25 N -0.924 5.924 26 Si 0.917 3.083 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 C -0.113 4.113 31 C -0.116 4.116 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.395 0.605 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.045 0.955 48 H 0.050 0.950 49 H 0.050 0.950 50 H 0.254 0.746 51 H 0.122 0.878 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.153 -23.519 2.815 27.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.083 4.083 7 C -0.103 4.103 8 C -0.174 4.174 9 C 0.292 3.708 10 O -0.423 6.423 11 N -0.364 5.364 12 C 0.021 3.979 13 H 0.101 0.899 14 C -0.182 4.182 15 C 0.047 3.953 16 H 0.171 0.829 17 C -0.176 4.176 18 C -0.170 4.170 19 C 0.019 3.981 20 H 0.102 0.898 21 N -0.311 5.311 22 C -0.337 4.337 23 H 0.097 0.903 24 C -0.208 4.208 25 N -0.572 5.572 26 Si 0.748 3.252 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 C -0.131 4.131 31 C -0.134 4.134 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.229 0.771 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.064 0.936 51 H 0.140 0.860 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.557 -22.511 2.784 26.952 hybrid contribution 0.376 0.474 -0.249 0.654 sum -14.181 -22.037 2.535 26.328 Atomic orbital electron populations 1.21748 0.94778 1.01624 1.02265 1.20533 0.96152 0.92788 1.02738 1.19879 0.99617 0.96235 0.93286 1.20997 1.00137 0.94921 0.97433 1.21076 0.99581 0.94750 0.97735 1.19954 0.98987 0.96154 0.93157 1.20330 0.93459 0.91902 1.04578 1.21646 0.96711 0.94711 1.04355 1.20596 0.82700 0.91163 0.76303 1.90700 1.55353 1.46404 1.49803 1.46276 1.06513 1.09448 1.74167 1.22634 0.95574 0.80561 0.99179 0.89934 1.23309 0.94802 0.99526 1.00524 1.23769 0.96323 0.87111 0.88110 0.82875 1.23037 0.95914 0.98515 1.00116 1.22898 0.96886 0.97865 0.99307 1.23189 0.92262 0.89506 0.93121 0.89793 1.46486 1.11714 1.05804 1.67097 1.19065 0.99953 0.83348 1.31362 0.90324 1.24698 0.96221 0.98428 1.01458 1.69438 1.05654 1.34870 1.47262 0.86025 0.76802 0.84391 0.78025 1.21656 1.21681 1.20771 1.21088 0.99475 0.94735 0.97784 1.21008 1.00095 0.94896 0.97447 0.92472 0.92570 0.92547 0.91132 0.91149 0.86313 0.86031 0.90122 0.90210 0.89144 0.89034 0.77094 0.91704 0.92769 0.92667 0.93654 0.93104 0.93108 0.93584 0.85963 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.89 37.16 0.37 -0.45 16 2 C -0.08 -0.51 6.06 -27.89 -0.17 -0.68 16 3 C -0.09 -0.73 5.13 -104.63 -0.54 -1.26 16 4 C -0.12 -0.97 9.70 -39.59 -0.38 -1.35 16 5 C -0.11 -1.02 9.70 -39.58 -0.38 -1.40 16 6 C -0.08 -0.79 5.13 -104.62 -0.54 -1.33 16 7 C -0.06 -0.68 4.64 -27.88 -0.13 -0.81 16 8 C -0.13 -1.37 5.68 -27.88 -0.16 -1.53 16 9 C 0.51 7.38 7.83 -10.99 -0.09 7.29 16 10 O -0.55 -10.27 15.64 5.56 0.09 -10.18 16 11 N -0.71 -10.31 3.71 -51.40 -0.19 -10.50 16 12 C 0.13 2.36 3.14 -65.44 -0.21 2.16 16 13 H 0.08 1.76 7.58 -51.93 -0.39 1.36 16 14 C -0.14 -2.69 6.20 -24.23 -0.15 -2.84 16 15 C 0.15 3.45 4.72 -62.80 -0.30 3.15 16 16 H 0.15 3.94 5.52 -51.93 -0.29 3.65 16 17 C -0.14 -2.61 6.44 -24.23 -0.16 -2.77 16 18 C -0.13 -2.38 6.32 -24.24 -0.15 -2.53 16 19 C 0.13 2.69 5.35 -62.80 -0.34 2.36 16 20 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 21 N -0.59 -14.76 2.99 -145.81 -0.44 -15.20 16 22 C -0.21 -5.80 10.59 -15.06 -0.16 -5.96 16 23 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 25 N -0.92 -26.22 10.46 55.49 0.58 -25.64 16 26 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 30 C -0.11 -1.03 9.70 -39.59 -0.38 -1.41 16 31 C -0.12 -0.97 9.70 -39.58 -0.38 -1.36 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 36 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 40 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.39 4.64 7.91 -40.82 -0.32 4.32 16 44 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.05 0.86 7.38 -51.93 -0.38 0.48 16 46 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.04 0.73 7.81 -51.93 -0.41 0.32 16 48 H 0.05 0.78 6.39 -51.93 -0.33 0.45 16 49 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 51 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 52 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 411.61 15.07 6.20 6.20 Total: -1.00 -31.28 411.61 -11.96 -43.24 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -8.84 Total: 6.16 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -4.34 Total: -11.17 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.05 Total: -51.33 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.28 -11.96 -43.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110088545.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.204 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds