Wall clock time and date at job start Wed Apr 1 2020 01:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38234 * 120.00056 * 2 1 4 4 C 1.38235 * 120.00132 * 179.97438 * 3 2 1 5 5 C 1.38233 * 119.99971 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00169 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47027 * 90.00135 * 6 5 4 8 8 H 1.09001 * 109.47276 * 305.00493 * 7 6 5 9 9 C 1.53003 * 109.46968 * 64.99917 * 7 6 5 10 10 C 1.50697 * 109.47485 * 184.99920 * 7 6 5 11 11 O 1.21281 * 119.99677 * 0.02562 * 10 7 6 12 12 N 1.34774 * 120.00040 * 179.97438 * 10 7 6 13 13 C 1.46508 * 119.99751 * 180.02562 * 12 10 7 14 14 H 1.09000 * 110.55672 * 32.96686 * 13 12 10 15 15 C 1.54848 * 110.62620 * 155.87441 * 13 12 10 16 16 C 1.55847 * 103.44645 * 118.48651 * 15 13 12 17 17 H 1.08999 * 115.55685 * 159.56379 * 16 15 13 18 18 C 1.55841 * 105.06433 * 288.17442 * 16 15 13 19 19 C 1.54853 * 103.44635 * 71.82647 * 18 16 15 20 20 C 1.55848 * 110.62424 * 269.90076 * 13 12 10 21 21 H 1.08995 * 115.56397 * 81.94628 * 20 13 12 22 22 N 1.50240 * 101.04978 * 32.93831 * 16 15 13 23 23 C 1.36931 * 130.83814 * 126.02724 * 22 16 15 24 24 H 1.08003 * 119.99913 * 180.02562 * 23 22 16 25 25 C 1.38816 * 120.00275 * 0.02633 * 23 22 16 26 26 N 1.31618 * 119.99776 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00177 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47070 * 60.00208 * 27 25 23 29 29 H 1.48494 * 109.46950 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47275 * 300.00220 * 27 25 23 31 31 C 1.38238 * 120.00037 * 359.97438 * 5 4 3 32 32 C 1.38234 * 119.99996 * 359.97438 * 31 5 4 33 33 H 1.09007 * 109.47118 * 90.00132 * 1 2 3 34 34 H 1.09004 * 109.47426 * 209.99881 * 1 2 3 35 35 H 1.09003 * 109.47091 * 330.00094 * 1 2 3 36 36 H 1.08002 * 120.00120 * 0.25527 * 3 2 1 37 37 H 1.08000 * 119.99839 * 179.97438 * 4 3 2 38 38 H 1.08999 * 109.47358 * 210.00434 * 6 5 4 39 39 H 1.09000 * 109.47415 * 330.00558 * 6 5 4 40 40 H 1.08997 * 109.47268 * 179.97438 * 9 7 6 41 41 H 1.08999 * 109.47542 * 300.00577 * 9 7 6 42 42 H 1.09001 * 109.46652 * 60.00194 * 9 7 6 43 43 H 0.96993 * 120.00001 * 0.02562 * 12 10 7 44 44 H 1.08996 * 110.62629 * 236.98077 * 15 13 12 45 45 H 1.09003 * 110.62446 * 359.97438 * 15 13 12 46 46 H 1.09003 * 110.62812 * 190.31291 * 18 16 15 47 47 H 1.08994 * 110.62797 * 313.17549 * 18 16 15 48 48 H 1.08994 * 110.62705 * 118.48506 * 19 18 16 49 49 H 1.08998 * 110.62924 * 241.51326 * 19 18 16 50 50 H 0.97000 * 119.99813 * 180.02562 * 26 25 23 51 51 H 1.07996 * 119.99855 * 179.97438 * 31 5 4 52 52 H 1.07997 * 119.99985 * 179.97438 * 32 31 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7786 0.0000 0.0016 7 6 6.2886 0.0012 1.4441 8 1 5.8540 0.8435 1.9825 9 6 5.8838 -1.3055 2.1293 10 6 7.7905 0.1250 1.4460 11 8 8.3936 0.2049 0.3968 12 7 8.4634 0.1480 2.6135 13 6 9.9234 0.2689 2.6152 14 1 10.2581 0.8777 1.7752 15 6 10.4197 0.8670 3.9545 16 6 11.3194 -0.2608 4.5438 17 1 12.0399 0.0578 5.2972 18 6 10.3285 -1.3775 4.9908 19 6 9.8322 -1.9757 3.6515 20 6 10.5909 -1.1389 2.5776 21 1 10.6669 -1.5972 1.5916 22 7 11.8851 -0.8631 3.2891 23 6 13.1812 -1.0905 2.9104 24 1 13.3926 -1.5412 1.9519 25 6 14.2235 -0.7419 3.7584 26 7 13.9658 -0.1932 4.9267 27 14 15.9916 -1.0528 3.2421 28 1 16.2809 -0.3053 1.9920 29 1 16.9087 -0.5952 4.3166 30 1 16.1906 -2.5055 3.0075 31 6 3.5805 -1.1972 0.0027 32 6 2.1982 -1.1972 0.0032 33 1 -0.3634 0.0000 -1.0277 34 1 -0.3634 -0.8900 0.5138 35 1 -0.3633 0.8900 0.5138 36 1 1.6582 2.1325 0.0042 37 1 4.1205 2.1325 0.0001 38 1 6.1420 -0.8904 -0.5115 39 1 6.1420 0.8895 -0.5129 40 1 6.2475 -1.3049 3.1568 41 1 4.7975 -1.3952 2.1280 42 1 6.3184 -2.1478 1.5910 43 1 7.9810 0.0845 3.4526 44 1 11.0028 1.7710 3.7787 45 1 9.5795 1.0741 4.6173 46 1 10.8441 -2.1345 5.5818 47 1 9.4987 -0.9513 5.5546 48 1 10.1018 -3.0292 3.5782 49 1 8.7549 -1.8458 3.5486 50 1 14.6941 0.0508 5.5191 51 1 4.1205 -2.1324 0.0031 52 1 1.6582 -2.1325 0.0036 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110171752.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:59 Heat of formation + Delta-G solvation = 16.598079 kcal Electronic energy + Delta-G solvation = -29974.674232 eV Core-core repulsion = 26132.429161 eV Total energy + Delta-G solvation = -3842.245071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.31222 -39.63414 -38.44314 -35.34152 -33.93210 -32.53813 -32.10830 -31.14874 -29.33726 -29.03819 -28.48074 -27.43656 -25.71509 -24.30521 -23.20326 -22.78032 -21.34976 -20.86629 -19.90981 -19.38211 -18.51060 -17.27120 -16.90900 -15.99613 -15.81425 -15.57716 -15.26240 -15.00113 -14.84049 -14.46776 -14.19625 -13.97896 -13.83132 -13.63788 -13.42685 -13.01925 -12.75859 -12.55942 -12.33057 -12.25113 -12.16128 -12.05672 -11.74108 -11.48535 -11.34576 -11.21193 -11.14288 -11.03934 -10.96846 -10.90646 -10.87845 -10.81601 -10.21039 -10.10560 -9.84754 -9.53118 -9.32987 -9.21850 -9.11285 -8.92108 -8.66678 -8.46742 -6.90447 -5.71910 -3.09664 1.10361 1.19145 2.91351 3.39357 3.42010 3.45208 3.46573 3.61188 4.45375 4.54776 4.56169 4.69566 4.75013 4.81490 4.85027 5.02825 5.05151 5.21383 5.25181 5.26582 5.34042 5.39193 5.42326 5.48685 5.57309 5.62592 5.65188 5.70542 5.82067 5.85578 5.87395 5.89861 5.98192 6.04185 6.08449 6.09615 6.13536 6.21603 6.32651 6.34839 6.36407 6.48335 6.54754 6.61080 6.71501 6.80743 6.82910 6.97488 7.01339 7.28638 7.53265 7.76225 7.88835 8.16402 8.55325 9.11358 9.73821 10.54504 11.37841 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.030540 B = 0.002052 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.610357 B =13640.878364 C =13813.612112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.120 4.120 4 C -0.113 4.113 5 C -0.080 4.080 6 C -0.062 4.062 7 C -0.104 4.104 8 H 0.094 0.906 9 C -0.146 4.146 10 C 0.512 3.488 11 O -0.544 6.544 12 N -0.711 5.711 13 C 0.126 3.874 14 H 0.083 0.917 15 C -0.142 4.142 16 C 0.156 3.844 17 H 0.153 0.847 18 C -0.137 4.137 19 C -0.131 4.131 20 C 0.129 3.871 21 H 0.084 0.916 22 N -0.589 5.589 23 C -0.210 4.210 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.924 5.924 27 Si 0.917 3.083 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.286 1.286 31 C -0.110 4.110 32 C -0.120 4.120 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.394 0.606 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.044 0.956 48 H 0.050 0.950 49 H 0.051 0.949 50 H 0.254 0.746 51 H 0.123 0.877 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.840 0.801 -4.598 26.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.138 4.138 4 C -0.131 4.131 5 C -0.080 4.080 6 C -0.100 4.100 7 C -0.125 4.125 8 H 0.112 0.888 9 C -0.204 4.204 10 C 0.297 3.703 11 O -0.421 6.421 12 N -0.362 5.362 13 C 0.020 3.980 14 H 0.101 0.899 15 C -0.182 4.182 16 C 0.050 3.950 17 H 0.169 0.831 18 C -0.177 4.177 19 C -0.170 4.170 20 C 0.020 3.980 21 H 0.102 0.898 22 N -0.310 5.310 23 C -0.338 4.338 24 H 0.096 0.904 25 C -0.208 4.208 26 N -0.572 5.572 27 Si 0.748 3.252 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.213 1.213 31 C -0.128 4.128 32 C -0.138 4.138 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.229 0.771 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.065 0.935 51 H 0.141 0.859 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.021 0.868 -5.302 25.591 hybrid contribution 0.601 -0.185 0.162 0.650 sum -24.419 0.683 -5.140 24.964 Atomic orbital electron populations 1.20781 0.91423 1.02648 1.02185 1.19905 0.95951 0.93307 1.00357 1.21008 0.94174 0.97437 1.01140 1.21079 0.94077 0.97764 1.00178 1.19915 0.95644 0.93126 0.99322 1.20406 0.89814 1.04525 0.95242 1.21258 0.92631 1.00600 0.98031 0.88812 1.21861 1.02203 0.95919 1.00398 1.20517 0.89364 0.76275 0.84109 1.90695 1.70278 1.49758 1.31400 1.46254 1.08392 1.73580 1.07924 1.22640 0.76944 0.99244 0.99122 0.89918 1.23305 0.99145 1.00626 0.95091 1.23692 0.91559 0.88782 0.91004 0.83065 1.23053 0.98475 1.00283 0.95881 1.22917 0.97883 0.99144 0.97072 1.23164 0.86870 0.92988 0.94967 0.89818 1.46440 0.99481 1.69690 1.15345 1.19012 0.80227 1.33528 1.01039 0.90390 1.24701 0.97907 1.01589 0.96594 1.69455 1.30278 1.47837 1.09644 0.86106 0.84022 0.77820 0.77299 1.21218 1.21587 1.21283 1.21093 0.94008 0.97767 0.99972 1.21019 0.94201 0.97431 1.01182 0.91343 0.91653 0.91669 0.86284 0.86047 0.90212 0.90083 0.92053 0.91314 0.91926 0.77121 0.91696 0.92796 0.92704 0.93694 0.93131 0.93023 0.93549 0.85950 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.00 0.36 -0.29 16 2 C -0.10 -0.77 5.88 -104.62 -0.62 -1.39 16 3 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 4 C -0.11 -1.03 9.70 -39.58 -0.38 -1.42 16 5 C -0.08 -0.77 4.71 -104.63 -0.49 -1.26 16 6 C -0.06 -0.67 4.19 -27.88 -0.12 -0.79 16 7 C -0.10 -1.11 2.71 -91.77 -0.25 -1.35 16 8 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 9 C -0.15 -1.35 8.66 37.16 0.32 -1.03 16 10 C 0.51 7.54 7.15 -10.99 -0.08 7.46 16 11 O -0.54 -10.30 15.58 5.56 0.09 -10.21 16 12 N -0.71 -10.33 3.60 -51.39 -0.19 -10.52 16 13 C 0.13 2.36 3.15 -65.43 -0.21 2.16 16 14 H 0.08 1.76 7.58 -51.93 -0.39 1.37 16 15 C -0.14 -2.69 6.20 -24.24 -0.15 -2.84 16 16 C 0.16 3.50 4.69 -62.80 -0.29 3.21 16 17 H 0.15 3.88 5.57 -51.93 -0.29 3.59 16 18 C -0.14 -2.63 6.44 -24.24 -0.16 -2.78 16 19 C -0.13 -2.38 6.32 -24.23 -0.15 -2.53 16 20 C 0.13 2.71 5.35 -62.79 -0.34 2.37 16 21 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 22 N -0.59 -14.69 2.99 -145.81 -0.44 -15.13 16 23 C -0.21 -5.81 10.59 -15.06 -0.16 -5.97 16 24 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 26 N -0.92 -26.22 10.48 55.49 0.58 -25.64 16 27 Si 0.92 22.12 29.55 -169.99 -5.02 17.10 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 31 C -0.11 -0.99 7.96 -39.58 -0.32 -1.30 16 32 C -0.12 -0.99 9.70 -39.58 -0.38 -1.38 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 35 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 36 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 39 H 0.08 0.95 7.90 -51.93 -0.41 0.54 16 40 H 0.06 0.53 7.56 -51.93 -0.39 0.14 16 41 H 0.07 0.57 6.27 -51.93 -0.33 0.24 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.39 4.74 7.33 -40.82 -0.30 4.45 16 44 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.05 0.86 7.39 -51.93 -0.38 0.47 16 46 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.04 0.72 7.82 -51.93 -0.41 0.32 16 48 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.05 0.79 6.39 -51.93 -0.33 0.46 16 50 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 51 H 0.12 0.97 8.04 -52.49 -0.42 0.55 16 52 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 405.54 15.07 6.11 6.11 Total: -1.00 -31.09 405.54 -11.44 -42.53 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -8.69 Total: 6.72 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -3.89 Total: -10.96 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.04 Total: -51.29 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.09 -11.44 -42.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110171752.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.131 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds