Wall clock time and date at job start Wed Apr 1 2020 01:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38237 * 119.99892 * 2 1 4 4 C 1.38236 * 119.99714 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00382 * 359.95712 * 4 3 2 6 6 C 1.50704 * 120.00160 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47083 * 89.99763 * 6 5 4 8 8 H 1.08994 * 109.47260 * 55.00034 * 7 6 5 9 9 C 1.53000 * 109.47083 * 294.99797 * 7 6 5 10 10 C 1.50700 * 109.47140 * 175.00000 * 7 6 5 11 11 O 1.21289 * 119.99650 * 0.02562 * 10 7 6 12 12 N 1.34772 * 120.00094 * 179.97438 * 10 7 6 13 13 C 1.46499 * 119.99901 * 180.02562 * 12 10 7 14 14 H 1.08996 * 110.68499 * 37.00322 * 13 12 10 15 15 C 1.55874 * 110.10146 * 160.86756 * 13 12 10 16 16 C 1.55845 * 103.53098 * 118.86009 * 15 13 12 17 17 H 1.08995 * 116.12481 * 158.54502 * 16 15 13 18 18 C 1.55844 * 105.06813 * 287.57550 * 16 15 13 19 19 C 1.54853 * 103.44557 * 71.82294 * 18 16 15 20 20 C 1.55847 * 110.62816 * 274.01811 * 13 12 10 21 21 H 1.08999 * 115.56236 * 82.69399 * 20 13 12 22 22 N 1.50239 * 101.04795 * 32.34000 * 16 15 13 23 23 C 1.36935 * 130.84064 * 126.05224 * 22 16 15 24 24 H 1.07999 * 120.00140 * 179.97438 * 23 22 16 25 25 C 1.38817 * 119.99835 * 359.96981 * 23 22 16 26 26 N 1.31612 * 120.00159 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99945 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47082 * 359.97438 * 27 25 23 29 29 H 1.48492 * 109.47003 * 119.99878 * 27 25 23 30 30 H 1.48502 * 109.46971 * 240.00218 * 27 25 23 31 31 C 1.38235 * 120.00010 * 0.27156 * 5 4 3 32 32 C 1.38237 * 119.99735 * 359.51861 * 31 5 4 33 33 H 1.09001 * 109.46933 * 90.00539 * 1 2 3 34 34 H 1.09006 * 109.47243 * 210.00519 * 1 2 3 35 35 H 1.08991 * 109.47278 * 330.00202 * 1 2 3 36 36 H 1.07997 * 119.99794 * 359.97210 * 3 2 1 37 37 H 1.08001 * 119.99752 * 179.97438 * 4 3 2 38 38 H 1.08999 * 109.46915 * 329.99898 * 6 5 4 39 39 H 1.09000 * 109.46887 * 209.99495 * 6 5 4 40 40 H 1.08994 * 109.47265 * 300.00233 * 9 7 6 41 41 H 1.09000 * 109.46831 * 60.00312 * 9 7 6 42 42 H 1.08997 * 109.47059 * 179.97438 * 9 7 6 43 43 H 0.97000 * 119.99956 * 0.02562 * 12 10 7 44 44 H 1.09001 * 111.09881 * 0.10152 * 15 13 12 45 45 H 1.08995 * 110.07622 * 237.14241 * 15 13 12 46 46 H 1.08998 * 110.62720 * 190.31175 * 18 16 15 47 47 H 1.08994 * 110.62811 * 313.17658 * 18 16 15 48 48 H 1.09001 * 110.62844 * 241.51554 * 19 18 16 49 49 H 1.09000 * 110.62691 * 118.48845 * 19 18 16 50 50 H 0.96996 * 120.00118 * 179.97438 * 26 25 23 51 51 H 1.07995 * 120.00115 * 179.73271 * 31 5 4 52 52 H 1.08001 * 120.00016 * 180.25422 * 32 31 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0020 6 6 5.7787 0.0001 0.0031 7 6 6.2876 0.0012 1.4460 8 1 5.8526 -0.8401 1.9854 9 6 5.8823 1.3091 2.1287 10 6 7.7895 -0.1226 1.4491 11 8 8.3934 -0.2033 0.4004 12 7 8.4616 -0.1426 2.6171 13 6 9.9217 -0.2624 2.6200 14 1 10.3552 0.2930 1.7884 15 6 10.4955 0.2133 3.9890 16 6 11.2050 -1.0567 4.5481 17 1 11.9724 -0.8847 5.3028 18 6 10.0496 -2.0137 4.9698 19 6 9.4670 -2.4927 3.6173 20 6 10.3498 -1.7598 2.5626 21 1 10.3639 -2.2072 1.5687 22 7 11.6703 -1.7094 3.2774 23 6 12.9148 -2.1295 2.8901 24 1 13.0536 -2.5847 1.9206 25 6 13.9979 -1.9704 3.7437 26 7 13.8288 -1.4152 4.9250 27 14 15.6956 -2.5428 3.2152 28 1 15.6187 -3.1282 1.8525 29 1 16.6272 -1.3865 3.2058 30 1 16.1904 -3.5695 4.1672 31 6 3.5806 -1.1971 -0.0028 32 6 2.1982 -1.1972 0.0010 33 1 -0.3633 -0.0001 -1.0277 34 1 -0.3634 -0.8900 0.5139 35 1 -0.3633 0.8899 0.5138 36 1 1.6581 2.1324 -0.0005 37 1 4.1205 2.1325 0.0001 38 1 6.1424 0.8897 -0.5111 39 1 6.1424 -0.8904 -0.5097 40 1 6.3173 2.1504 1.5893 41 1 4.7960 1.3986 2.1265 42 1 6.2444 1.3097 3.1567 43 1 7.9786 -0.0777 3.4558 44 1 9.6975 0.5335 4.6589 45 1 11.2142 1.0179 3.8341 46 1 10.4385 -2.8570 5.5406 47 1 9.2967 -1.4761 5.5460 48 1 8.4238 -2.1919 3.5205 49 1 9.5670 -3.5735 3.5174 50 1 14.5855 -1.3043 5.5215 51 1 4.1206 -2.1324 -0.0061 52 1 1.6582 -2.1325 0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110171753.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:03 Heat of formation + Delta-G solvation = 16.125647 kcal Electronic energy + Delta-G solvation = -29940.250455 eV Core-core repulsion = 26097.984898 eV Total energy + Delta-G solvation = -3842.265557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.29083 -39.61643 -38.42238 -35.33860 -33.93311 -32.54773 -32.10336 -31.14575 -29.30128 -29.01946 -28.52132 -27.39553 -25.72678 -24.30085 -23.21370 -22.78827 -21.35240 -20.86376 -19.89276 -19.37372 -18.53690 -17.29639 -16.80778 -16.00126 -15.81467 -15.58623 -15.24872 -15.12453 -14.82288 -14.38427 -14.19730 -13.94943 -13.81387 -13.65553 -13.48909 -12.99965 -12.76201 -12.55893 -12.35192 -12.18828 -12.16726 -12.10772 -11.75024 -11.49780 -11.33608 -11.21924 -11.15260 -11.02192 -10.97756 -10.90890 -10.88101 -10.83181 -10.19934 -10.05434 -9.81932 -9.52509 -9.36682 -9.21958 -9.11102 -8.93266 -8.66378 -8.46460 -6.90338 -5.72304 -3.10007 1.10642 1.19440 2.92128 3.38751 3.41293 3.45924 3.47950 3.61451 4.45194 4.54987 4.56416 4.69643 4.74843 4.81833 4.84320 5.02176 5.04932 5.21968 5.25388 5.26640 5.33469 5.39749 5.42003 5.48887 5.55341 5.61608 5.62837 5.69893 5.81901 5.85605 5.87551 5.89278 5.97914 6.02217 6.07956 6.09442 6.12597 6.21886 6.32688 6.34943 6.36721 6.48611 6.54948 6.61367 6.71337 6.81034 6.83057 6.98081 7.01696 7.28354 7.53838 7.76283 7.88951 8.17736 8.55731 9.11317 9.73740 10.54320 11.37481 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.028210 B = 0.002063 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.313854 B =13568.349211 C =13666.629014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.121 4.121 4 C -0.111 4.111 5 C -0.080 4.080 6 C -0.062 4.062 7 C -0.104 4.104 8 H 0.095 0.905 9 C -0.146 4.146 10 C 0.512 3.488 11 O -0.543 6.543 12 N -0.711 5.711 13 C 0.128 3.872 14 H 0.082 0.918 15 C -0.140 4.140 16 C 0.154 3.846 17 H 0.155 0.845 18 C -0.137 4.137 19 C -0.129 4.129 20 C 0.128 3.872 21 H 0.083 0.917 22 N -0.591 5.591 23 C -0.208 4.208 24 H 0.079 0.921 25 C -0.014 4.014 26 N -0.924 5.924 27 Si 0.916 3.084 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 C -0.112 4.112 32 C -0.119 4.119 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.394 0.606 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.044 0.956 48 H 0.050 0.950 49 H 0.050 0.950 50 H 0.253 0.747 51 H 0.122 0.878 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.389 5.062 -4.615 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.139 4.139 4 C -0.129 4.129 5 C -0.080 4.080 6 C -0.100 4.100 7 C -0.126 4.126 8 H 0.113 0.887 9 C -0.203 4.203 10 C 0.297 3.703 11 O -0.421 6.421 12 N -0.362 5.362 13 C 0.023 3.977 14 H 0.101 0.899 15 C -0.179 4.179 16 C 0.047 3.953 17 H 0.171 0.829 18 C -0.177 4.177 19 C -0.169 4.169 20 C 0.019 3.981 21 H 0.101 0.899 22 N -0.311 5.311 23 C -0.336 4.336 24 H 0.097 0.903 25 C -0.209 4.209 26 N -0.572 5.572 27 Si 0.747 3.253 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 C -0.130 4.130 32 C -0.137 4.137 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.229 0.771 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.064 0.936 51 H 0.140 0.860 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -24.577 4.949 -5.341 25.633 hybrid contribution 0.561 -0.317 0.172 0.667 sum -24.016 4.632 -5.169 24.999 Atomic orbital electron populations 1.20778 0.91423 1.02651 1.02183 1.19906 0.95952 0.93307 1.00356 1.21011 0.94192 0.97416 1.01258 1.21077 0.94000 0.97718 1.00104 1.19915 0.95645 0.93126 0.99332 1.20405 0.89820 1.04520 0.95233 1.21262 0.92694 1.00574 0.98054 0.88692 1.21852 1.02259 0.95893 1.00321 1.20508 0.89373 0.76284 0.84104 1.90698 1.70165 1.49740 1.31471 1.46261 1.08479 1.73539 1.07910 1.22829 0.77131 0.98994 0.98791 0.89940 1.23459 0.99009 1.00894 0.94580 1.23761 0.92899 0.87574 0.91065 0.82866 1.23053 0.98511 1.00352 0.95752 1.22883 0.97546 0.99398 0.97034 1.23191 0.86927 0.92943 0.95046 0.89878 1.46496 1.02050 1.68692 1.13901 1.19114 0.82631 1.31700 1.00116 0.90274 1.24701 0.97963 1.01759 0.96482 1.69439 1.29453 1.49596 1.08754 0.85954 0.83914 0.77801 0.77600 1.20547 1.21791 1.21840 1.21096 0.94087 0.97814 1.00038 1.21018 0.94182 0.97454 1.01061 0.91342 0.91651 0.91671 0.86291 0.86017 0.90302 0.89995 0.92079 0.91295 0.92112 0.77141 0.92718 0.91775 0.92723 0.93685 0.93131 0.93114 0.93639 0.85974 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.00 0.36 -0.29 16 2 C -0.10 -0.78 5.88 -104.62 -0.62 -1.39 16 3 C -0.12 -0.99 9.70 -39.58 -0.38 -1.38 16 4 C -0.11 -0.98 7.96 -39.58 -0.32 -1.30 16 5 C -0.08 -0.77 4.71 -104.62 -0.49 -1.27 16 6 C -0.06 -0.67 4.19 -27.88 -0.12 -0.79 16 7 C -0.10 -1.11 2.71 -91.77 -0.25 -1.36 16 8 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 9 C -0.15 -1.29 8.66 37.16 0.32 -0.97 16 10 C 0.51 7.54 7.15 -10.99 -0.08 7.46 16 11 O -0.54 -10.28 15.65 5.55 0.09 -10.20 16 12 N -0.71 -10.31 3.56 -50.86 -0.18 -10.49 16 13 C 0.13 2.40 3.17 -64.88 -0.21 2.19 16 14 H 0.08 1.74 7.71 -51.93 -0.40 1.34 16 15 C -0.14 -2.63 6.20 -23.68 -0.15 -2.78 16 16 C 0.15 3.45 4.72 -62.80 -0.30 3.15 16 17 H 0.15 3.94 5.52 -51.93 -0.29 3.66 16 18 C -0.14 -2.64 6.44 -24.24 -0.16 -2.80 16 19 C -0.13 -2.38 6.34 -24.23 -0.15 -2.54 16 20 C 0.13 2.70 5.30 -62.80 -0.33 2.37 16 21 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 22 N -0.59 -14.77 2.98 -145.81 -0.43 -15.20 16 23 C -0.21 -5.76 10.59 -15.06 -0.16 -5.91 16 24 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 26 N -0.92 -26.24 10.47 55.49 0.58 -25.66 16 27 Si 0.92 22.15 29.55 -169.99 -5.02 17.13 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 31 C -0.11 -1.05 9.70 -39.58 -0.38 -1.43 16 32 C -0.12 -1.01 9.70 -39.58 -0.38 -1.40 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 35 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.94 8.04 -52.49 -0.42 0.52 16 38 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 39 H 0.08 0.98 7.90 -51.93 -0.41 0.57 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.55 6.27 -51.93 -0.33 0.23 16 42 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 43 H 0.39 4.71 7.44 -40.82 -0.30 4.41 16 44 H 0.05 0.86 7.34 -51.93 -0.38 0.48 16 45 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.04 0.73 7.82 -51.93 -0.41 0.32 16 48 H 0.05 0.80 6.56 -51.93 -0.34 0.45 16 49 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 52 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 405.87 15.07 6.12 6.12 Total: -1.00 -31.18 405.87 -11.44 -42.62 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -8.70 Total: 6.61 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -3.88 Total: -10.91 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.03 Total: -51.36 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.18 -11.44 -42.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110171753.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.741 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds