Wall clock time and date at job start Wed Apr 1 2020 01:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 120.00168 * 2 1 4 4 C 1.38212 * 120.00080 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00012 * 359.95316 * 4 3 2 6 6 C 1.38221 * 119.99952 * 0.02562 * 5 4 3 7 7 C 1.38214 * 119.99468 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00440 * 359.97191 * 7 2 1 9 9 C 1.53002 * 109.46832 * 277.42367 * 8 7 2 10 10 H 1.08995 * 109.47733 * 55.10172 * 9 8 7 11 11 C 1.53002 * 109.47076 * 295.09783 * 9 8 7 12 12 C 1.50704 * 109.46803 * 175.10322 * 9 8 7 13 13 O 1.21278 * 119.99763 * 359.97438 * 12 9 8 14 14 N 1.34772 * 119.99939 * 179.97438 * 12 9 8 15 15 C 1.46502 * 119.99994 * 179.97438 * 14 12 9 16 16 H 1.08997 * 110.55532 * 35.72954 * 15 14 12 17 17 C 1.54856 * 110.62517 * 158.62726 * 15 14 12 18 18 C 1.55844 * 103.44271 * 118.49201 * 17 15 14 19 19 H 1.09005 * 115.56406 * 158.81360 * 18 17 15 20 20 C 1.55847 * 105.06379 * 287.42055 * 18 17 15 21 21 C 1.56681 * 102.59865 * 72.30347 * 20 18 17 22 22 C 1.55847 * 103.60175 * 359.66698 * 21 20 18 23 23 H 1.09001 * 116.12913 * 159.38134 * 22 21 20 24 24 N 1.50232 * 101.04887 * 33.16511 * 22 21 20 25 25 C 1.36939 * 130.83576 * 126.03609 * 24 22 21 26 26 H 1.07998 * 120.00344 * 0.02784 * 25 24 22 27 27 C 1.38813 * 119.99856 * 180.02562 * 25 24 22 28 28 N 1.31621 * 120.00402 * 0.02562 * 27 25 24 29 29 Si 1.86806 * 119.99869 * 179.97438 * 27 25 24 30 30 H 1.48500 * 109.47090 * 89.99969 * 29 27 25 31 31 H 1.48503 * 109.47111 * 209.99724 * 29 27 25 32 32 H 1.48503 * 109.47150 * 329.99976 * 29 27 25 33 33 H 1.09001 * 109.47566 * 85.28294 * 1 2 3 34 34 H 1.08997 * 109.47260 * 205.28582 * 1 2 3 35 35 H 1.08999 * 109.47135 * 325.28486 * 1 2 3 36 36 H 1.08007 * 119.99760 * 359.97438 * 3 2 1 37 37 H 1.07998 * 120.00220 * 179.97438 * 4 3 2 38 38 H 1.07997 * 120.00185 * 179.72344 * 5 4 3 39 39 H 1.07995 * 119.99816 * 179.97438 * 6 5 4 40 40 H 1.08997 * 109.46986 * 37.42079 * 8 7 2 41 41 H 1.08994 * 109.46985 * 157.42640 * 8 7 2 42 42 H 1.09002 * 109.47121 * 55.63181 * 11 9 8 43 43 H 1.09004 * 109.47372 * 175.63053 * 11 9 8 44 44 H 1.09008 * 109.47472 * 295.63157 * 11 9 8 45 45 H 0.97006 * 120.00433 * 0.02562 * 14 12 9 46 46 H 1.08992 * 110.62901 * 236.97812 * 17 15 14 47 47 H 1.08999 * 110.62826 * 0.02562 * 17 15 14 48 48 H 1.09008 * 110.62663 * 190.31611 * 20 18 17 49 49 H 1.09004 * 110.62999 * 313.33770 * 20 18 17 50 50 H 1.08999 * 110.35917 * 241.21995 * 21 20 18 51 51 H 1.09001 * 110.88552 * 118.36446 * 21 20 18 52 52 H 0.96998 * 120.00382 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0001 6 6 3.5805 -1.1971 0.0004 7 6 2.1979 -1.1970 0.0005 8 6 1.4444 -2.5021 0.0018 9 6 1.0286 -2.8495 1.4326 10 1 0.4614 -2.0215 1.8575 11 6 2.2777 -3.1000 2.2801 12 6 0.1732 -4.0902 1.4199 13 8 -0.0794 -4.6418 0.3697 14 7 -0.3111 -4.5867 2.5755 15 6 -1.1432 -5.7924 2.5630 16 1 -0.8007 -6.4859 1.7950 17 6 -1.1381 -6.4730 3.9540 18 6 -2.6342 -6.4224 4.3875 19 1 -2.9276 -7.1439 5.1501 20 6 -2.9043 -4.9278 4.7368 21 6 -2.9146 -4.2439 3.3272 22 6 -2.6416 -5.4232 2.3456 23 1 -2.9414 -5.2648 1.3097 24 7 -3.3236 -6.5556 3.0594 25 6 -4.2794 -7.4378 2.6311 26 1 -4.6591 -7.3749 1.6220 27 6 -4.7604 -8.4129 3.4941 28 7 -4.2981 -8.4894 4.7241 29 14 -6.0648 -9.6159 2.9101 30 1 -5.4083 -10.8115 2.3231 31 1 -6.9078 -10.0290 4.0608 32 1 -6.9153 -8.9635 1.8823 33 1 -0.3634 0.0845 -1.0242 34 1 -0.3633 -0.9292 0.4389 35 1 -0.3633 0.8447 0.5852 36 1 1.6583 2.1327 -0.0004 37 1 4.1205 2.1325 -0.0010 38 1 5.3516 -0.0001 -0.0050 39 1 4.1205 -2.1323 0.0003 40 1 0.5557 -2.4091 -0.6224 41 1 2.0844 -3.2915 -0.3924 42 1 2.9335 -2.2311 2.2263 43 1 1.9855 -3.2711 3.3162 44 1 2.8039 -3.9764 1.9015 45 1 -0.1094 -4.1453 3.4154 46 1 -0.7959 -7.5048 3.8754 47 1 -0.5169 -5.9132 4.6532 48 1 -3.8728 -4.8164 5.2246 49 1 -2.1081 -4.5305 5.3665 50 1 -2.1221 -3.4984 3.2615 51 1 -3.8845 -3.7905 3.1223 52 1 -4.6345 -9.1705 5.3272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110173045.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:13 Heat of formation + Delta-G solvation = 19.096741 kcal Electronic energy + Delta-G solvation = -30449.483045 eV Core-core repulsion = 26607.346324 eV Total energy + Delta-G solvation = -3842.136721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.39577 -39.65575 -38.37906 -35.05791 -33.92620 -32.89414 -32.30241 -31.01676 -29.18060 -29.01184 -27.65633 -27.29286 -26.66122 -24.38931 -23.44655 -22.19963 -21.37555 -20.80171 -19.84284 -19.38680 -18.56041 -17.30301 -16.82988 -16.30851 -15.97058 -15.59845 -15.20866 -14.96797 -14.81934 -14.34760 -14.22143 -13.93573 -13.66340 -13.51373 -13.35441 -12.99693 -12.75682 -12.46327 -12.32317 -12.23122 -12.17441 -12.09318 -11.74273 -11.49589 -11.40787 -11.24134 -11.04930 -10.99473 -10.94773 -10.89776 -10.87984 -10.81283 -10.23854 -10.08802 -9.80522 -9.53115 -9.36162 -9.22042 -8.98578 -8.92955 -8.73347 -8.47120 -6.90667 -5.72259 -3.10304 1.13989 1.17912 2.91045 3.39251 3.41719 3.45556 3.47060 3.61206 4.44963 4.57022 4.59107 4.73194 4.75091 4.79285 4.89814 4.97084 5.14538 5.21937 5.24805 5.30206 5.39415 5.45012 5.46237 5.55480 5.61412 5.62145 5.68428 5.68899 5.81738 5.85010 5.87898 5.93696 5.95336 6.03039 6.08902 6.12327 6.13171 6.29366 6.30452 6.31582 6.33297 6.50936 6.54671 6.60559 6.70558 6.81578 6.82434 6.97544 7.00640 7.28051 7.52983 7.75711 7.88182 8.17559 8.54802 9.10990 9.73517 10.54048 11.37237 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025222 B = 0.002289 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.893197 B =12231.700591 C =12344.856261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.080 4.080 3 C -0.120 4.120 4 C -0.123 4.123 5 C -0.127 4.127 6 C -0.112 4.112 7 C -0.076 4.076 8 C -0.063 4.063 9 C -0.106 4.106 10 H 0.096 0.904 11 C -0.145 4.145 12 C 0.512 3.488 13 O -0.543 6.543 14 N -0.711 5.711 15 C 0.127 3.873 16 H 0.081 0.919 17 C -0.141 4.141 18 C 0.154 3.846 19 H 0.153 0.847 20 C -0.138 4.138 21 C -0.129 4.129 22 C 0.128 3.872 23 H 0.085 0.915 24 N -0.589 5.589 25 C -0.209 4.209 26 H 0.079 0.921 27 C -0.013 4.013 28 N -0.924 5.924 29 Si 0.917 3.083 30 H -0.289 1.289 31 H -0.291 1.291 32 H -0.282 1.282 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.394 0.606 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.047 0.953 50 H 0.050 0.950 51 H 0.050 0.950 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.006 18.401 -3.976 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.080 4.080 3 C -0.138 4.138 4 C -0.142 4.142 5 C -0.145 4.145 6 C -0.130 4.130 7 C -0.076 4.076 8 C -0.101 4.101 9 C -0.127 4.127 10 H 0.114 0.886 11 C -0.202 4.202 12 C 0.297 3.703 13 O -0.420 6.420 14 N -0.361 5.361 15 C 0.022 3.978 16 H 0.099 0.901 17 C -0.181 4.181 18 C 0.047 3.953 19 H 0.170 0.830 20 C -0.177 4.177 21 C -0.169 4.169 22 C 0.019 3.981 23 H 0.103 0.897 24 N -0.310 5.310 25 C -0.337 4.337 26 H 0.097 0.903 27 C -0.208 4.208 28 N -0.572 5.572 29 Si 0.747 3.253 30 H -0.217 1.217 31 H -0.217 1.217 32 H -0.208 1.208 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.229 0.771 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.068 0.932 51 H 0.069 0.931 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.572 17.702 -4.697 24.039 hybrid contribution -0.441 -0.249 0.122 0.521 sum 15.131 17.453 -4.575 23.547 Atomic orbital electron populations 1.20924 0.91188 1.03248 1.02618 1.19823 0.96112 0.92585 0.99510 1.21015 0.94260 0.97431 1.01138 1.21094 0.94311 0.97967 1.00780 1.21109 0.99725 0.92572 1.01061 1.21083 0.93594 0.98123 1.00161 1.19788 0.93630 0.94531 0.99667 1.20409 1.00634 0.93590 0.95437 1.21305 0.97144 0.96640 0.97643 0.88615 1.21823 0.96609 1.02615 0.99188 1.20501 0.80019 0.85639 0.84116 1.90697 1.59571 1.60843 1.30919 1.46257 1.51718 1.29557 1.08597 1.22629 0.91407 0.85002 0.98807 0.90081 1.23301 1.00995 0.99484 0.94326 1.23714 0.86738 0.94045 0.90827 0.83010 1.23356 0.99847 0.99336 0.95173 1.23195 0.99490 0.97329 0.96858 1.23186 0.90477 0.89116 0.95291 0.89734 1.46456 1.43304 1.32466 1.08764 1.19063 1.11623 1.06142 0.96859 0.90321 1.24699 1.00629 0.99493 0.95997 1.69439 1.45972 1.36344 1.05469 0.86029 0.80906 0.81005 0.77318 1.21657 1.21699 1.20767 0.91008 0.90852 0.91497 0.86260 0.86378 0.86314 0.86069 0.89769 0.90346 0.91324 0.92112 0.92083 0.77147 0.91702 0.92803 0.92670 0.93477 0.93180 0.93110 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.33 36.00 0.34 -0.72 16 2 C -0.08 -0.76 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -1.03 9.72 -39.58 -0.38 -1.41 16 4 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 5 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 6 C -0.11 -1.00 8.42 -39.58 -0.33 -1.33 16 7 C -0.08 -0.74 4.49 -104.62 -0.47 -1.21 16 8 C -0.06 -0.68 3.47 -27.88 -0.10 -0.78 16 9 C -0.11 -1.12 2.42 -91.77 -0.22 -1.35 16 10 H 0.10 0.92 6.90 -51.93 -0.36 0.56 16 11 C -0.14 -1.30 8.84 37.16 0.33 -0.97 16 12 C 0.51 7.46 7.15 -10.99 -0.08 7.38 16 13 O -0.54 -10.17 15.63 5.56 0.09 -10.08 16 14 N -0.71 -10.22 3.56 -51.39 -0.18 -10.41 16 15 C 0.13 2.36 3.10 -65.43 -0.20 2.16 16 16 H 0.08 1.71 7.66 -51.93 -0.40 1.31 16 17 C -0.14 -2.66 6.20 -24.23 -0.15 -2.81 16 18 C 0.15 3.43 4.67 -62.80 -0.29 3.14 16 19 H 0.15 3.90 5.52 -51.93 -0.29 3.61 16 20 C -0.14 -2.62 6.58 -23.23 -0.15 -2.77 16 21 C -0.13 -2.35 6.37 -23.22 -0.15 -2.50 16 22 C 0.13 2.68 5.35 -62.80 -0.34 2.35 16 23 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 24 N -0.59 -14.65 2.99 -145.82 -0.44 -15.09 16 25 C -0.21 -5.77 10.59 -15.06 -0.16 -5.93 16 26 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 27 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 28 N -0.92 -26.18 10.46 55.49 0.58 -25.60 16 29 Si 0.92 22.08 29.55 -169.99 -5.02 17.05 16 30 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 31 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 32 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.68 5.15 -51.93 -0.27 0.41 16 35 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 37 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.12 0.95 8.05 -52.49 -0.42 0.52 16 40 H 0.08 1.01 6.86 -51.93 -0.36 0.65 16 41 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 42 H 0.07 0.57 6.36 -51.93 -0.33 0.24 16 43 H 0.06 0.49 7.69 -51.93 -0.40 0.09 16 44 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 45 H 0.39 4.69 7.48 -40.82 -0.31 4.38 16 46 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.05 0.85 7.34 -51.93 -0.38 0.47 16 48 H 0.05 1.13 8.14 -51.92 -0.42 0.71 16 49 H 0.05 0.75 7.80 -51.93 -0.41 0.35 16 50 H 0.05 0.77 6.45 -51.93 -0.33 0.44 16 51 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 52 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 400.28 15.07 6.03 6.03 Total: -1.00 -30.93 400.28 -11.25 -42.18 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -8.43 Total: 7.32 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -3.87 Total: -11.40 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.04 Total: -51.09 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.93 -11.25 -42.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110173045.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.273 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds