Wall clock time and date at job start Wed Apr 1 2020 01:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38231 * 119.99825 * 2 1 4 4 C 1.38243 * 120.00070 * 180.02562 * 3 2 1 5 5 C 1.38235 * 119.99602 * 0.07188 * 4 3 2 6 6 C 1.50701 * 119.99808 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47174 * 89.99739 * 6 5 4 8 8 H 1.09000 * 109.47495 * 305.00396 * 7 6 5 9 9 C 1.53007 * 109.46862 * 65.00051 * 7 6 5 10 10 C 1.50701 * 109.47468 * 184.99985 * 7 6 5 11 11 O 1.21279 * 119.99421 * 0.02562 * 10 7 6 12 12 N 1.34775 * 120.00156 * 180.02562 * 10 7 6 13 13 C 1.46493 * 120.00053 * 180.02562 * 12 10 7 14 14 H 1.09002 * 110.56087 * 36.44853 * 13 12 10 15 15 C 1.54850 * 110.62863 * 273.54663 * 13 12 10 16 16 C 1.55847 * 103.44668 * 241.51104 * 15 13 12 17 17 H 1.09001 * 115.56145 * 158.81347 * 16 15 13 18 18 C 1.55841 * 105.06069 * 287.42020 * 16 15 13 19 19 C 1.56687 * 102.59980 * 72.30395 * 18 16 15 20 20 C 1.55841 * 110.62815 * 159.52081 * 13 12 10 21 21 H 1.09005 * 115.56191 * 319.67702 * 20 13 12 22 22 N 1.50236 * 101.05525 * 85.55152 * 20 13 12 23 23 C 1.36937 * 130.84185 * 233.99521 * 22 20 13 24 24 H 1.07995 * 119.99692 * 359.97438 * 23 22 20 25 25 C 1.38810 * 119.99893 * 179.97438 * 23 22 20 26 26 N 1.31617 * 120.00142 * 359.97438 * 25 23 22 27 27 Si 1.86809 * 120.00032 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46734 * 0.02562 * 27 25 23 29 29 H 1.48491 * 109.47033 * 119.99688 * 27 25 23 30 30 H 1.48500 * 109.47132 * 240.00174 * 27 25 23 31 31 C 1.38230 * 120.00326 * 359.97438 * 5 4 3 32 32 C 1.38234 * 120.00292 * 180.13138 * 2 1 3 33 33 H 1.09002 * 109.47284 * 269.86794 * 1 2 3 34 34 H 1.08996 * 109.47210 * 29.86582 * 1 2 3 35 35 H 1.09002 * 109.47150 * 149.86798 * 1 2 3 36 36 H 1.08001 * 120.00367 * 0.10906 * 3 2 1 37 37 H 1.08000 * 119.99728 * 180.34119 * 4 3 2 38 38 H 1.08993 * 109.47341 * 210.00461 * 6 5 4 39 39 H 1.09001 * 109.46864 * 330.00546 * 6 5 4 40 40 H 1.09000 * 109.46784 * 59.99909 * 9 7 6 41 41 H 1.09002 * 109.47117 * 180.02562 * 9 7 6 42 42 H 1.09001 * 109.46940 * 299.99892 * 9 7 6 43 43 H 0.97006 * 119.99503 * 359.97438 * 12 10 7 44 44 H 1.09006 * 110.62649 * 0.02562 * 15 13 12 45 45 H 1.09002 * 110.63017 * 123.01772 * 15 13 12 46 46 H 1.09003 * 110.62709 * 190.31442 * 18 16 15 47 47 H 1.09001 * 110.62902 * 313.33222 * 18 16 15 48 48 H 1.09002 * 110.35421 * 241.21795 * 19 18 16 49 49 H 1.09004 * 110.88798 * 118.36457 * 19 18 16 50 50 H 0.97006 * 119.99760 * 179.97438 * 26 25 23 51 51 H 1.08001 * 120.00350 * 179.97438 * 31 5 4 52 52 H 1.08007 * 119.99474 * 359.97438 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0026 6 6 5.7787 0.0000 -0.0037 7 6 6.2898 -0.0017 1.4383 8 1 5.8556 0.8394 1.9788 9 6 5.8856 -1.3100 2.1211 10 6 7.7917 0.1221 1.4392 11 8 8.3939 0.2042 0.3897 12 7 8.4656 0.1417 2.6062 13 6 9.9256 0.2626 2.6070 14 1 10.2554 0.9236 1.8055 15 6 10.5885 -1.1304 2.4729 16 6 11.4064 -1.2710 3.7920 17 1 11.6607 -2.2907 4.0813 18 6 12.6128 -0.2985 3.6260 19 6 11.9393 1.1090 3.7683 20 6 10.4333 0.7740 3.9888 21 1 9.8305 1.5554 4.4516 22 7 10.5341 -0.5151 4.7538 23 6 9.9961 -0.8870 5.9568 24 1 9.3837 -0.1922 6.5123 25 6 10.2379 -2.1569 6.4624 26 7 10.9839 -3.0038 5.7852 27 14 9.5045 -2.6640 8.1040 28 1 8.7107 -1.5389 8.6601 29 1 8.6225 -3.8426 7.9091 30 1 10.5968 -3.0137 9.0473 31 6 3.5806 -1.1971 -0.0035 32 6 2.1982 -1.1971 -0.0027 33 1 -0.3634 -0.0024 1.0277 34 1 -0.3633 0.8911 -0.5117 35 1 -0.3633 -0.8888 -0.5159 36 1 1.6581 2.1325 0.0018 37 1 4.1205 2.1325 0.0050 38 1 6.1417 -0.8892 -0.5190 39 1 6.1416 0.8907 -0.5167 40 1 6.3198 -2.1511 1.5806 41 1 6.2493 -1.3110 3.1486 42 1 4.7992 -1.3995 2.1205 43 1 7.9838 0.0764 3.4456 44 1 9.8309 -1.9113 2.4053 45 1 11.2491 -1.1595 1.6064 46 1 13.3446 -0.4557 4.4184 47 1 13.0739 -0.4223 2.6461 48 1 12.0741 1.6880 2.8547 49 1 12.3424 1.6478 4.6259 50 1 11.1531 -3.8912 6.1387 51 1 4.1206 -2.1324 -0.0055 52 1 1.6582 -2.1325 -0.0045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111476098.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:17 Heat of formation + Delta-G solvation = 10.683673 kcal Electronic energy + Delta-G solvation = -30102.684343 eV Core-core repulsion = 26260.182804 eV Total energy + Delta-G solvation = -3842.501539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.12607 -39.48608 -38.40589 -35.23972 -33.76905 -32.58979 -32.15553 -31.06712 -29.10984 -28.87386 -28.42443 -27.50576 -25.59488 -24.24851 -23.26815 -22.74034 -21.29223 -20.55128 -19.81849 -19.29934 -18.64152 -17.04746 -16.92697 -15.99586 -15.77832 -15.67238 -15.13907 -14.86287 -14.81709 -14.31809 -13.99924 -13.89998 -13.67047 -13.52935 -13.31910 -12.93981 -12.90552 -12.59705 -12.39380 -12.08443 -12.00775 -11.96478 -11.83222 -11.27765 -11.16777 -11.11727 -11.10483 -11.02347 -10.94524 -10.92088 -10.86907 -10.49083 -10.39685 -10.09066 -9.89535 -9.58594 -9.23563 -9.12262 -9.02746 -8.97446 -8.57873 -8.40336 -6.96071 -5.76078 -3.15305 1.18671 1.27307 3.03411 3.34349 3.39611 3.42443 3.52648 3.74542 4.38838 4.63035 4.64159 4.79980 4.86908 4.91360 4.97153 5.12509 5.14778 5.18260 5.32896 5.34381 5.35318 5.49638 5.51173 5.56040 5.63513 5.69267 5.72028 5.82613 5.84667 5.88006 5.96047 5.99856 6.05841 6.12278 6.15715 6.18925 6.25345 6.29683 6.31627 6.43322 6.44072 6.50240 6.57072 6.60497 6.75867 6.83206 6.88911 6.95548 7.15394 7.33862 7.46063 7.77956 8.05265 8.16261 8.68298 9.05576 9.68863 10.50241 11.32752 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012935 B = 0.002664 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.218517 B =10506.570350 C =11927.337601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.120 4.120 4 C -0.113 4.113 5 C -0.079 4.079 6 C -0.061 4.061 7 C -0.103 4.103 8 H 0.093 0.907 9 C -0.147 4.147 10 C 0.513 3.487 11 O -0.554 6.554 12 N -0.704 5.704 13 C 0.129 3.871 14 H 0.076 0.924 15 C -0.141 4.141 16 C 0.153 3.847 17 H 0.151 0.849 18 C -0.139 4.139 19 C -0.127 4.127 20 C 0.125 3.875 21 H 0.087 0.913 22 N -0.590 5.590 23 C -0.213 4.213 24 H 0.078 0.922 25 C -0.010 4.010 26 N -0.919 5.919 27 Si 0.914 3.086 28 H -0.281 1.281 29 H -0.291 1.291 30 H -0.291 1.291 31 C -0.110 4.110 32 C -0.120 4.120 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.402 0.598 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.050 0.950 48 H 0.050 0.950 49 H 0.057 0.943 50 H 0.253 0.747 51 H 0.123 0.877 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.880 6.519 -10.552 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.138 4.138 4 C -0.131 4.131 5 C -0.079 4.079 6 C -0.098 4.098 7 C -0.125 4.125 8 H 0.111 0.889 9 C -0.204 4.204 10 C 0.299 3.701 11 O -0.433 6.433 12 N -0.353 5.353 13 C 0.023 3.977 14 H 0.094 0.906 15 C -0.182 4.182 16 C 0.046 3.954 17 H 0.168 0.832 18 C -0.178 4.178 19 C -0.167 4.167 20 C 0.017 3.983 21 H 0.105 0.895 22 N -0.311 5.311 23 C -0.341 4.341 24 H 0.096 0.904 25 C -0.206 4.206 26 N -0.566 5.566 27 Si 0.745 3.255 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.218 1.218 31 C -0.128 4.128 32 C -0.138 4.138 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.236 0.764 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.064 0.936 51 H 0.141 0.859 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.498 6.364 -11.014 19.287 hybrid contribution -0.545 -0.285 1.293 1.432 sum -15.042 6.079 -9.721 18.913 Atomic orbital electron populations 1.20776 0.91448 1.02556 1.02222 1.19897 0.95929 0.93313 1.00439 1.20998 0.94172 0.97405 1.01243 1.21068 0.94064 0.97729 1.00274 1.19919 0.95684 0.93118 0.99210 1.20396 0.89778 1.04323 0.95346 1.21244 0.92665 1.00723 0.97834 0.88885 1.21856 1.01995 0.95648 1.00919 1.20497 0.89415 0.76152 0.84027 1.90649 1.70456 1.50729 1.31457 1.46025 1.08275 1.72778 1.08242 1.22610 0.78426 0.97913 0.98786 0.90601 1.23444 0.99692 0.95753 0.99284 1.23711 0.87339 0.98891 0.85429 0.83171 1.23366 0.99277 0.96055 0.99147 1.23168 0.96810 0.97233 0.99510 1.23153 0.94579 0.90508 0.90091 0.89491 1.46515 1.56512 1.08796 1.19239 1.19036 1.24279 0.97120 0.93700 0.90384 1.24697 1.00584 0.96395 0.98904 1.69482 1.42205 1.06888 1.38064 0.86012 0.78208 0.78165 0.83158 1.20609 1.21834 1.21829 1.21103 0.94016 0.97820 0.99838 1.21022 0.94209 0.97438 1.01159 0.91293 0.91728 0.91699 0.86312 0.86077 0.90318 0.90203 0.92085 0.91588 0.91465 0.76381 0.92320 0.92965 0.92643 0.93140 0.93091 0.92457 0.93609 0.85927 0.86259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.10 -0.88 5.88 -104.63 -0.62 -1.50 16 3 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 4 C -0.11 -1.16 9.70 -39.58 -0.38 -1.54 16 5 C -0.08 -0.87 4.71 -104.63 -0.49 -1.36 16 6 C -0.06 -0.73 4.19 -27.88 -0.12 -0.85 16 7 C -0.10 -1.31 2.71 -91.77 -0.25 -1.56 16 8 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 9 C -0.15 -1.81 8.66 37.16 0.32 -1.48 16 10 C 0.51 8.42 7.15 -10.99 -0.08 8.34 16 11 O -0.55 -10.81 15.64 5.56 0.09 -10.72 16 12 N -0.70 -11.95 4.99 -51.40 -0.26 -12.21 16 13 C 0.13 2.40 2.73 -65.44 -0.18 2.22 16 14 H 0.08 1.43 7.36 -51.93 -0.38 1.04 16 15 C -0.14 -2.90 6.22 -24.24 -0.15 -3.06 16 16 C 0.15 3.46 4.67 -62.80 -0.29 3.17 16 17 H 0.15 3.92 5.52 -51.93 -0.29 3.64 16 18 C -0.14 -2.74 6.58 -23.22 -0.15 -2.90 16 19 C -0.13 -2.30 6.49 -23.22 -0.15 -2.45 16 20 C 0.13 2.41 5.04 -62.80 -0.32 2.09 16 21 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 22 N -0.59 -13.78 2.99 -145.82 -0.44 -14.22 16 23 C -0.21 -5.50 10.59 -15.06 -0.16 -5.66 16 24 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 25 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 26 N -0.92 -25.55 10.46 55.49 0.58 -24.97 16 27 Si 0.91 21.20 29.55 -169.99 -5.02 16.18 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 31 C -0.11 -1.14 7.96 -39.59 -0.32 -1.45 16 32 C -0.12 -1.15 9.70 -39.58 -0.38 -1.53 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 39 H 0.08 1.00 7.90 -51.93 -0.41 0.59 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.86 7.56 -51.93 -0.39 0.47 16 42 H 0.07 0.74 6.27 -51.93 -0.33 0.42 16 43 H 0.40 6.60 8.04 -40.82 -0.33 6.27 16 44 H 0.06 1.31 7.98 -51.93 -0.41 0.89 16 45 H 0.05 1.01 7.80 -51.93 -0.40 0.61 16 46 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 47 H 0.05 0.90 7.80 -51.93 -0.41 0.49 16 48 H 0.05 0.81 7.82 -51.93 -0.41 0.41 16 49 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 51 H 0.12 1.17 8.04 -52.49 -0.42 0.75 16 52 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 408.67 15.07 6.16 6.16 Total: -1.00 -29.62 408.67 -11.51 -41.13 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -8.79 Total: 10.44 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -3.84 Total: -11.79 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.11 Total: -51.39 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -29.62 -11.51 -41.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111476098.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.818 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds