Wall clock time and date at job start Wed Apr 1 2020 01:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38251 * 120.00359 * 2 1 4 4 C 1.38211 * 120.00560 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99756 * 0.02562 * 4 3 2 6 6 C 1.38215 * 119.99941 * 359.76598 * 5 4 3 7 7 C 1.38217 * 119.99701 * 180.02562 * 2 1 3 8 8 C 1.50699 * 120.00229 * 359.97438 * 7 2 1 9 9 C 1.53000 * 109.46952 * 84.99795 * 8 7 2 10 10 H 1.08999 * 109.47296 * 304.99663 * 9 8 7 11 11 C 1.52996 * 109.47420 * 65.00075 * 9 8 7 12 12 C 1.50702 * 109.46611 * 185.00129 * 9 8 7 13 13 O 1.21279 * 120.00337 * 359.97438 * 12 9 8 14 14 N 1.34779 * 119.99519 * 179.97438 * 12 9 8 15 15 C 1.46507 * 119.99455 * 180.02562 * 14 12 9 16 16 H 1.09000 * 110.68552 * 32.01432 * 15 14 12 17 17 C 1.54853 * 110.62456 * 269.02314 * 15 14 12 18 18 C 1.55847 * 103.44638 * 241.51415 * 17 15 14 19 19 H 1.08997 * 115.56393 * 158.81308 * 18 17 15 20 20 C 1.55847 * 105.06162 * 288.17626 * 18 17 15 21 21 C 1.55877 * 103.52933 * 72.43206 * 20 18 17 22 22 C 1.55846 * 102.97150 * 359.11585 * 21 20 18 23 23 H 1.09002 * 115.56047 * 159.69072 * 22 21 20 24 24 N 1.50240 * 101.04996 * 33.81862 * 22 21 20 25 25 C 1.36936 * 130.84086 * 125.29791 * 24 22 21 26 26 H 1.07998 * 119.99632 * 359.97438 * 25 24 22 27 27 C 1.38814 * 120.00190 * 179.97438 * 25 24 22 28 28 N 1.31620 * 119.99870 * 0.02562 * 27 25 24 29 29 Si 1.86794 * 119.99763 * 179.97438 * 27 25 24 30 30 H 1.48494 * 109.47112 * 90.00229 * 29 27 25 31 31 H 1.48505 * 109.46834 * 210.00020 * 29 27 25 32 32 H 1.48497 * 109.47246 * 329.99664 * 29 27 25 33 33 H 1.09001 * 109.46747 * 269.97934 * 1 2 3 34 34 H 1.08995 * 109.46777 * 29.97954 * 1 2 3 35 35 H 1.08996 * 109.47037 * 149.97608 * 1 2 3 36 36 H 1.08007 * 119.99906 * 0.02562 * 3 2 1 37 37 H 1.07997 * 120.00521 * 179.97438 * 4 3 2 38 38 H 1.08002 * 119.99938 * 179.97438 * 5 4 3 39 39 H 1.08000 * 120.00096 * 180.25400 * 6 5 4 40 40 H 1.08997 * 109.46711 * 324.99816 * 8 7 2 41 41 H 1.08997 * 109.46867 * 205.00032 * 8 7 2 42 42 H 1.09003 * 109.47176 * 179.97438 * 11 9 8 43 43 H 1.09000 * 109.47149 * 299.99894 * 11 9 8 44 44 H 1.08999 * 109.47222 * 59.99543 * 11 9 8 45 45 H 0.97001 * 120.00656 * 359.97438 * 14 12 9 46 46 H 1.08997 * 110.62526 * 123.02521 * 17 15 14 47 47 H 1.09000 * 110.76127 * 0.06594 * 17 15 14 48 48 H 1.09003 * 110.62865 * 190.31234 * 20 18 17 49 49 H 1.08998 * 110.62667 * 313.17604 * 20 18 17 50 50 H 1.09006 * 110.09627 * 241.13600 * 21 20 18 51 51 H 1.09001 * 111.60505 * 117.80684 * 21 20 18 52 52 H 0.97003 * 119.99832 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 -0.0001 0.0005 6 6 3.5807 -1.1970 0.0049 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 6 1.0801 -2.8805 -1.4375 10 1 0.5302 -2.0613 -1.9007 11 6 2.3583 -3.1512 -2.2335 12 6 0.2221 -4.1195 -1.4284 13 8 -0.0687 -4.6480 -0.3762 14 7 -0.2219 -4.6401 -2.5895 15 6 -1.0565 -5.8442 -2.5806 16 1 -1.6746 -5.8776 -1.6834 17 6 -0.1798 -7.1163 -2.6868 18 6 -0.6561 -7.7746 -4.0167 19 1 0.0464 -8.4709 -4.4747 20 6 -2.0753 -8.3376 -3.7043 21 6 -2.9627 -7.0594 -3.6127 22 6 -1.9430 -5.9072 -3.8608 23 1 -2.3740 -4.9587 -4.1815 24 7 -1.0009 -6.5605 -4.8317 25 6 -0.5848 -6.1699 -6.0765 26 1 -0.9507 -5.2479 -6.5034 27 6 0.3073 -6.9591 -6.7895 28 7 0.7528 -8.0831 -6.2693 29 14 0.8742 -6.4265 -8.4878 30 1 2.0968 -5.5930 -8.3627 31 1 1.1755 -7.6272 -9.3081 32 1 -0.1989 -5.6362 -9.1427 33 1 -0.3633 -0.0004 1.0277 34 1 -0.3633 0.8901 -0.5135 35 1 -0.3633 -0.8897 -0.5142 36 1 1.6584 2.1326 0.0004 37 1 4.1205 2.1325 0.0001 38 1 5.3518 -0.0001 0.0005 39 1 4.1207 -2.1323 0.0090 40 1 0.5342 -2.3959 0.5893 41 1 2.0697 -3.2825 0.4334 42 1 2.0986 -3.4213 -3.2571 43 1 2.9789 -2.2551 -2.2401 44 1 2.9082 -3.9705 -1.7703 45 1 0.0104 -4.2173 -3.4310 46 1 -0.3632 -7.7806 -1.8423 47 1 0.8765 -6.8538 -2.7451 48 1 -2.4224 -8.9764 -4.5165 49 1 -2.0724 -8.8847 -2.7616 50 1 -3.3999 -6.9775 -2.6175 51 1 -3.7403 -7.0550 -4.3765 52 1 1.3764 -8.6343 -6.7674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111478334.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:24 Heat of formation + Delta-G solvation = -0.919645 kcal Electronic energy + Delta-G solvation = -30534.766683 eV Core-core repulsion = 26691.761987 eV Total energy + Delta-G solvation = -3843.004696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.46613 -40.63569 -39.75796 -35.95963 -35.27910 -34.37747 -33.55690 -31.82772 -30.93914 -30.36353 -29.21990 -28.12636 -27.38619 -26.13231 -24.72476 -22.96058 -22.59278 -21.52286 -21.41077 -20.65704 -20.18052 -18.83498 -18.15389 -17.30981 -17.01203 -16.76525 -16.70830 -15.99381 -15.89548 -15.68405 -15.50072 -15.11009 -14.64320 -14.60788 -14.31915 -13.97457 -13.83601 -13.66080 -13.62952 -13.49446 -13.20099 -13.02793 -12.90212 -12.86491 -12.79483 -12.74609 -12.66301 -12.21754 -12.07814 -12.05641 -11.95597 -11.88706 -11.72744 -11.68597 -11.67031 -11.17433 -10.92755 -10.89463 -10.55236 -9.90039 -9.64540 -9.41881 -8.85022 -7.74192 -5.13753 0.46960 0.52769 1.50005 1.50685 1.58491 1.69916 2.33277 2.51625 2.89017 3.39294 3.46489 3.64985 3.83613 3.92856 4.01715 4.05900 4.06954 4.11645 4.18638 4.27518 4.28959 4.38228 4.47786 4.49976 4.51192 4.55753 4.64660 4.71966 4.77779 4.81022 4.82865 4.84359 4.85613 4.92412 4.95377 5.01645 5.09545 5.11062 5.18027 5.18361 5.22803 5.26893 5.38715 5.39310 5.53537 5.62750 5.64603 5.66980 5.74308 5.81396 5.91309 6.18156 6.28778 6.68676 7.07632 7.32592 7.74457 8.60440 9.33114 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.002890 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.961807 B = 9685.287890 C =10891.389255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.092 4.092 3 C -0.127 4.127 4 C -0.126 4.126 5 C -0.133 4.133 6 C -0.122 4.122 7 C -0.089 4.089 8 C -0.052 4.052 9 C -0.093 4.093 10 H 0.111 0.889 11 C -0.139 4.139 12 C 0.514 3.486 13 O -0.584 6.584 14 N -0.704 5.704 15 C 0.140 3.860 16 H 0.085 0.915 17 C -0.133 4.133 18 C 0.140 3.860 19 H 0.115 0.885 20 C -0.132 4.132 21 C -0.118 4.118 22 C 0.126 3.874 23 H 0.101 0.899 24 N -0.609 5.609 25 C -0.212 4.212 26 H 0.085 0.915 27 C -0.067 4.067 28 N -0.948 5.948 29 Si 0.972 3.028 30 H -0.290 1.290 31 H -0.302 1.302 32 H -0.271 1.271 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.050 0.950 45 H 0.405 0.595 46 H 0.063 0.937 47 H 0.033 0.967 48 H 0.036 0.964 49 H 0.070 0.930 50 H 0.080 0.920 51 H 0.061 0.939 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.254 16.908 12.219 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.144 4.144 5 C -0.151 4.151 6 C -0.140 4.140 7 C -0.089 4.089 8 C -0.090 4.090 9 C -0.114 4.114 10 H 0.129 0.871 11 C -0.196 4.196 12 C 0.301 3.699 13 O -0.465 6.465 14 N -0.352 5.352 15 C 0.033 3.967 16 H 0.103 0.897 17 C -0.173 4.173 18 C 0.034 3.966 19 H 0.132 0.868 20 C -0.171 4.171 21 C -0.158 4.158 22 C 0.019 3.981 23 H 0.119 0.881 24 N -0.330 5.330 25 C -0.341 4.341 26 H 0.103 0.897 27 C -0.259 4.259 28 N -0.598 5.598 29 Si 0.802 3.198 30 H -0.217 1.217 31 H -0.229 1.229 32 H -0.196 1.196 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.142 0.858 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.069 0.931 45 H 0.240 0.760 46 H 0.081 0.919 47 H 0.052 0.948 48 H 0.055 0.945 49 H 0.089 0.911 50 H 0.098 0.902 51 H 0.080 0.920 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.180 16.506 12.658 20.834 hybrid contribution 0.707 -0.261 -1.417 1.605 sum 1.887 16.246 11.241 19.845 Atomic orbital electron populations 1.20900 0.90587 1.03276 1.02853 1.20011 0.96765 0.92709 0.99753 1.21293 0.94694 0.97800 1.00731 1.21432 0.94457 0.98791 0.99731 1.21385 1.00818 0.92354 1.00513 1.21236 0.93585 0.98897 1.00309 1.19727 0.93943 0.94153 1.01123 1.20264 1.00189 0.93967 0.94595 1.21225 0.96765 0.94994 0.98405 0.87092 1.21769 0.95926 1.02634 0.99318 1.21081 0.79676 0.85954 0.83170 1.90633 1.59846 1.63873 1.32121 1.46006 1.51736 1.28587 1.08897 1.22374 0.91861 0.83740 0.98678 0.89693 1.23313 0.98043 0.97346 0.98644 1.23574 0.94977 0.90113 0.87951 0.86785 1.23138 0.97392 0.97033 0.99568 1.22988 0.96788 0.94934 1.01091 1.23364 0.90561 0.96191 0.87996 0.88123 1.46705 1.49768 1.22238 1.14334 1.19341 1.19526 1.04200 0.91029 0.89703 1.25402 1.01126 0.97540 1.01868 1.69720 1.36762 1.15082 1.38224 0.85152 0.78119 0.76370 0.80127 1.21711 1.22948 1.19644 0.90706 0.90170 0.91867 0.84388 0.84145 0.84542 0.85830 0.90678 0.91666 0.92387 0.90033 0.93083 0.75984 0.91875 0.94789 0.94472 0.91137 0.90192 0.92023 0.94589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 9.22 71.24 0.66 -1.28 16 2 C -0.09 -1.75 5.88 -19.86 -0.12 -1.86 16 3 C -0.13 -2.09 9.70 22.27 0.22 -1.87 16 4 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 5 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 6 C -0.12 -2.40 8.38 22.27 0.19 -2.21 16 7 C -0.09 -1.87 4.55 -19.86 -0.09 -1.96 16 8 C -0.05 -1.24 3.48 29.85 0.10 -1.13 16 9 C -0.09 -2.26 2.46 -11.54 -0.03 -2.29 16 10 H 0.11 2.36 7.03 -2.39 -0.02 2.34 16 11 C -0.14 -3.33 8.74 71.98 0.63 -2.70 16 12 C 0.51 16.27 7.15 87.66 0.63 16.90 16 13 O -0.58 -22.16 15.57 -3.03 -0.05 -22.21 16 14 N -0.70 -23.07 4.97 -434.89 -2.16 -25.24 16 15 C 0.14 5.01 2.82 46.61 0.13 5.14 16 16 H 0.09 2.99 7.26 -2.39 -0.02 2.97 16 17 C -0.13 -5.41 6.22 32.21 0.20 -5.21 16 18 C 0.14 6.40 4.72 46.23 0.22 6.62 16 19 H 0.11 6.19 5.52 -2.39 -0.01 6.17 16 20 C -0.13 -5.08 6.46 32.57 0.21 -4.87 16 21 C -0.12 -3.98 6.53 32.57 0.21 -3.77 16 22 C 0.13 4.62 5.01 46.23 0.23 4.85 16 23 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 24 N -0.61 -28.18 2.98 -615.22 -1.83 -30.01 16 25 C -0.21 -10.87 10.59 84.03 0.89 -9.98 16 26 H 0.09 4.12 7.83 -2.91 -0.02 4.09 16 27 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 28 N -0.95 -54.30 10.47 21.65 0.23 -54.08 16 29 Si 0.97 44.01 29.55 68.60 2.03 46.04 16 30 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 31 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 32 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.03 8.08 -2.39 -0.02 1.02 16 35 H 0.06 1.12 5.49 -2.39 -0.01 1.11 16 36 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 38 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 39 H 0.12 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.07 1.86 6.80 -2.39 -0.02 1.85 16 41 H 0.06 1.68 8.05 -2.39 -0.02 1.66 16 42 H 0.06 1.48 7.57 -2.39 -0.02 1.46 16 43 H 0.08 1.72 6.53 -2.39 -0.02 1.70 16 44 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.40 12.98 8.08 -92.71 -0.75 12.24 16 46 H 0.06 2.39 7.82 -2.39 -0.02 2.37 16 47 H 0.03 1.52 7.98 -2.39 -0.02 1.50 16 48 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.07 2.38 7.82 -2.39 -0.02 2.36 16 50 H 0.08 2.26 7.85 -2.38 -0.02 2.24 16 51 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 52 H 0.24 13.85 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -63.66 403.33 3.57 -60.09 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: 0.16 Total: 37.91 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 5.19 Total: -12.51 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -3.77 Total: -109.32 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.05 Total: -22.21 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -63.66 3.57 -60.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111478334.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.174 kcal (2) G-P(sol) polarization free energy of solvation -63.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds