Wall clock time and date at job start Wed Apr 1 2020 01:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 119.99734 * 2 1 4 4 C 1.38218 * 119.99606 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00329 * 0.02562 * 4 3 2 6 6 C 1.38216 * 119.99820 * 359.77717 * 5 4 3 7 7 C 1.38208 * 119.99979 * 180.02562 * 2 1 3 8 8 C 1.50704 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.52996 * 109.47227 * 280.41267 * 8 7 2 10 10 H 1.08999 * 109.47348 * 54.80252 * 9 8 7 11 11 C 1.53003 * 109.46940 * 294.80999 * 9 8 7 12 12 C 1.50692 * 109.47346 * 174.81102 * 9 8 7 13 13 O 1.21282 * 120.00135 * 359.97438 * 12 9 8 14 14 N 1.34779 * 120.00337 * 179.97438 * 12 9 8 15 15 C 1.46505 * 120.00115 * 180.02562 * 14 12 9 16 16 H 1.08997 * 110.68486 * 36.52562 * 15 14 12 17 17 C 1.54859 * 110.62127 * 273.54233 * 15 14 12 18 18 C 1.55841 * 103.44389 * 241.51043 * 17 15 14 19 19 H 1.08999 * 115.56376 * 159.57283 * 18 17 15 20 20 C 1.55848 * 105.06649 * 288.18116 * 18 17 15 21 21 C 1.54853 * 103.44921 * 71.81913 * 20 18 17 22 22 C 1.55840 * 110.62364 * 159.51873 * 15 14 12 23 23 H 1.08996 * 116.13300 * 319.33716 * 22 15 14 24 24 N 1.50238 * 101.05385 * 85.55184 * 22 15 14 25 25 C 1.36934 * 130.83808 * 233.96650 * 24 22 15 26 26 H 1.08002 * 120.00013 * 353.50737 * 25 24 22 27 27 C 1.38810 * 120.00029 * 173.50487 * 25 24 22 28 28 N 1.31621 * 120.00112 * 5.63494 * 27 25 24 29 29 Si 1.86806 * 120.00263 * 185.63318 * 27 25 24 30 30 H 1.48497 * 109.46946 * 94.99236 * 29 27 25 31 31 H 1.48497 * 109.47231 * 214.99438 * 29 27 25 32 32 H 1.48499 * 109.46865 * 334.99792 * 29 27 25 33 33 H 1.09002 * 109.46755 * 273.78700 * 1 2 3 34 34 H 1.09003 * 109.47341 * 33.78828 * 1 2 3 35 35 H 1.09001 * 109.46848 * 153.79217 * 1 2 3 36 36 H 1.07994 * 120.00081 * 359.97438 * 3 2 1 37 37 H 1.08000 * 119.99637 * 180.02562 * 4 3 2 38 38 H 1.08001 * 120.00056 * 179.97438 * 5 4 3 39 39 H 1.08001 * 120.00007 * 180.25414 * 6 5 4 40 40 H 1.08996 * 109.47392 * 160.40603 * 8 7 2 41 41 H 1.09007 * 109.46576 * 40.40723 * 8 7 2 42 42 H 1.09001 * 109.47494 * 55.72224 * 11 9 8 43 43 H 1.08998 * 109.47052 * 175.72768 * 11 9 8 44 44 H 1.09004 * 109.46711 * 295.72169 * 11 9 8 45 45 H 0.97002 * 119.99886 * 359.97438 * 14 12 9 46 46 H 1.09002 * 110.62222 * 123.02375 * 17 15 14 47 47 H 1.09002 * 110.62824 * 0.02562 * 17 15 14 48 48 H 1.09002 * 110.63220 * 190.32001 * 20 18 17 49 49 H 1.09006 * 110.62293 * 313.17831 * 20 18 17 50 50 H 1.09009 * 110.62288 * 118.49211 * 21 20 18 51 51 H 1.08995 * 110.62860 * 241.51418 * 21 20 18 52 52 H 0.96999 * 120.00198 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1969 0.0047 7 6 2.1980 -1.1969 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 6 0.9644 -2.8138 1.4183 10 1 0.3834 -1.9734 1.7981 11 6 2.1736 -3.0491 2.3257 12 6 0.1040 -4.0508 1.3970 13 8 -0.1050 -4.6262 0.3501 14 7 -0.4333 -4.5177 2.5415 15 6 -1.2693 -5.7206 2.5209 16 1 -0.8897 -6.4409 1.7962 17 6 -2.7416 -5.3563 2.2082 18 6 -3.5089 -5.8244 3.4812 19 1 -4.4864 -5.3675 3.6358 20 6 -3.4980 -7.3813 3.4113 21 6 -2.0258 -7.7455 3.7240 22 6 -1.3476 -6.3591 3.9404 23 1 -0.4197 -6.3736 4.5121 24 7 -2.4783 -5.5769 4.5461 25 6 -2.5480 -4.8592 5.7102 26 1 -1.7242 -4.8812 6.4083 27 6 -3.6773 -4.1032 5.9929 28 7 -4.7250 -4.1627 5.1983 29 14 -3.7104 -3.0014 7.5011 30 1 -3.3177 -1.6223 7.1152 31 1 -5.0812 -2.9845 8.0718 32 1 -2.7584 -3.5217 8.5151 33 1 -0.3633 0.0679 1.0255 34 1 -0.3634 0.8541 -0.5715 35 1 -0.3633 -0.9220 -0.4539 36 1 1.6583 2.1326 -0.0004 37 1 4.1204 2.1327 0.0010 38 1 5.3518 0.0001 0.0005 39 1 4.1207 -2.1322 0.0088 40 1 2.1013 -3.3007 -0.3456 41 1 0.5850 -2.4253 -0.6664 42 1 2.8348 -2.1837 2.2818 43 1 1.8350 -3.1961 3.3513 44 1 2.7124 -3.9354 1.9905 45 1 -0.2658 -4.0577 3.3790 46 1 -3.0921 -5.8961 1.3284 47 1 -2.8495 -4.2808 2.0680 48 1 -4.1660 -7.8041 4.1618 49 1 -3.7771 -7.7228 2.4145 50 1 -1.9635 -8.3490 4.6296 51 1 -1.5721 -8.2676 2.8815 52 1 -5.5140 -3.6342 5.3957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111478335.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:29 Heat of formation + Delta-G solvation = 13.094147 kcal Electronic energy + Delta-G solvation = -30613.504911 eV Core-core repulsion = 26771.107898 eV Total energy + Delta-G solvation = -3842.397013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.22810 -39.52255 -38.40945 -34.94515 -33.76435 -32.78724 -32.52165 -30.96957 -29.12622 -28.79438 -27.74559 -27.24465 -26.54036 -24.29268 -23.57079 -22.13141 -21.31133 -20.37994 -19.82964 -19.33901 -18.59505 -17.01245 -16.96151 -16.26571 -15.86861 -15.81996 -14.99756 -14.86829 -14.73004 -14.41896 -13.98406 -13.76350 -13.47552 -13.42219 -13.27135 -13.08748 -12.71589 -12.64161 -12.26447 -12.17003 -12.04669 -11.99187 -11.83060 -11.31450 -11.22400 -11.14495 -11.10449 -10.95769 -10.92936 -10.91107 -10.77162 -10.50608 -10.36542 -10.10534 -9.94818 -9.58336 -9.25384 -9.11512 -8.93091 -8.88978 -8.64278 -8.40339 -6.95756 -5.77784 -3.15901 1.23565 1.26840 3.04207 3.34071 3.39477 3.41867 3.55283 3.74726 4.38696 4.66665 4.68684 4.84714 4.87772 4.89861 5.00570 5.11913 5.13603 5.20250 5.31966 5.35014 5.50376 5.55076 5.57113 5.64490 5.68030 5.72245 5.75448 5.79479 5.83839 5.85978 5.97286 6.02530 6.05027 6.12383 6.13917 6.15745 6.25586 6.32276 6.37946 6.38785 6.42686 6.50134 6.61344 6.61858 6.75000 6.83028 6.91164 6.95682 7.14687 7.33363 7.47262 7.77593 8.05619 8.13816 8.68600 9.04760 9.68132 10.50408 11.31813 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.003039 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.226963 B = 9211.573819 C =10463.524659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.079 4.079 3 C -0.120 4.120 4 C -0.124 4.124 5 C -0.127 4.127 6 C -0.112 4.112 7 C -0.076 4.076 8 C -0.062 4.062 9 C -0.106 4.106 10 H 0.096 0.904 11 C -0.144 4.144 12 C 0.514 3.486 13 O -0.554 6.554 14 N -0.704 5.704 15 C 0.130 3.870 16 H 0.076 0.924 17 C -0.140 4.140 18 C 0.156 3.844 19 H 0.149 0.851 20 C -0.141 4.141 21 C -0.128 4.128 22 C 0.125 3.875 23 H 0.087 0.913 24 N -0.590 5.590 25 C -0.216 4.216 26 H 0.078 0.922 27 C -0.008 4.008 28 N -0.917 5.917 29 Si 0.912 3.088 30 H -0.290 1.290 31 H -0.291 1.291 32 H -0.282 1.282 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.402 0.598 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.048 0.952 50 H 0.056 0.944 51 H 0.051 0.949 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.028 5.647 -9.235 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.079 4.079 3 C -0.138 4.138 4 C -0.142 4.142 5 C -0.145 4.145 6 C -0.130 4.130 7 C -0.076 4.076 8 C -0.099 4.099 9 C -0.127 4.127 10 H 0.114 0.886 11 C -0.201 4.201 12 C 0.300 3.700 13 O -0.433 6.433 14 N -0.353 5.353 15 C 0.024 3.976 16 H 0.094 0.906 17 C -0.180 4.180 18 C 0.049 3.951 19 H 0.166 0.834 20 C -0.180 4.180 21 C -0.168 4.168 22 C 0.017 3.983 23 H 0.105 0.895 24 N -0.310 5.310 25 C -0.344 4.344 26 H 0.096 0.904 27 C -0.204 4.204 28 N -0.564 5.564 29 Si 0.743 3.257 30 H -0.217 1.217 31 H -0.218 1.218 32 H -0.207 1.207 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.236 0.764 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.075 0.925 51 H 0.070 0.930 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.704 5.421 -9.725 17.657 hybrid contribution 0.093 0.865 1.219 1.498 sum 13.797 6.286 -8.506 17.384 Atomic orbital electron populations 1.20934 0.91153 1.03207 1.02731 1.19822 0.96149 0.92591 0.99355 1.21020 0.94259 0.97451 1.01100 1.21088 0.94306 0.97949 1.00865 1.21093 0.99668 0.92584 1.01189 1.21067 0.93563 0.98082 1.00264 1.19790 0.93633 0.94575 0.99620 1.20408 1.00229 0.93550 0.95712 1.21265 0.97173 0.96972 0.97313 0.88585 1.21802 0.96920 1.02403 0.99006 1.20480 0.79978 0.85628 0.83954 1.90649 1.61917 1.59860 1.30886 1.46019 1.50126 1.29321 1.09785 1.22577 0.90628 0.85704 0.98691 0.90604 1.23423 0.94866 1.00773 0.98988 1.23656 0.96453 0.90329 0.84625 0.83382 1.23086 0.95403 1.00520 0.98994 1.22887 0.97121 0.97123 0.99661 1.23159 0.92687 0.91515 0.90986 0.89477 1.46503 1.07172 1.56503 1.20871 1.18994 1.01841 1.19227 0.94344 0.90449 1.24721 0.96309 1.00345 0.99003 1.69522 1.04528 1.43741 1.38630 0.86092 0.76944 0.80761 0.81927 1.21718 1.21790 1.20731 0.90810 0.91627 0.90798 0.86255 0.86403 0.86351 0.86111 0.90513 0.89767 0.91461 0.91926 0.92244 0.76351 0.92955 0.92280 0.92708 0.93325 0.92498 0.93013 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 8.89 36.01 0.32 -0.97 16 2 C -0.08 -0.87 5.87 -104.62 -0.61 -1.48 16 3 C -0.12 -1.20 9.72 -39.58 -0.38 -1.59 16 4 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 5 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 6 C -0.11 -1.13 8.65 -39.58 -0.34 -1.47 16 7 C -0.08 -0.85 4.42 -104.62 -0.46 -1.31 16 8 C -0.06 -0.75 3.58 -27.88 -0.10 -0.85 16 9 C -0.11 -1.35 2.65 -91.78 -0.24 -1.59 16 10 H 0.10 1.22 7.15 -51.93 -0.37 0.84 16 11 C -0.14 -1.58 8.88 37.16 0.33 -1.25 16 12 C 0.51 8.38 7.15 -10.99 -0.08 8.30 16 13 O -0.55 -10.73 15.64 5.56 0.09 -10.64 16 14 N -0.70 -11.91 5.00 -51.40 -0.26 -12.17 16 15 C 0.13 2.41 2.73 -65.43 -0.18 2.24 16 16 H 0.08 1.42 7.37 -51.93 -0.38 1.03 16 17 C -0.14 -2.87 6.22 -24.23 -0.15 -3.02 16 18 C 0.16 3.52 4.68 -62.80 -0.29 3.22 16 19 H 0.15 3.84 5.61 -51.93 -0.29 3.55 16 20 C -0.14 -2.75 6.44 -24.23 -0.16 -2.91 16 21 C -0.13 -2.29 6.44 -24.23 -0.16 -2.45 16 22 C 0.13 2.40 5.04 -62.80 -0.32 2.08 16 23 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 24 N -0.59 -13.72 2.99 -145.81 -0.44 -14.16 16 25 C -0.22 -5.56 10.58 -15.06 -0.16 -5.72 16 26 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 27 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 28 N -0.92 -25.41 10.52 55.49 0.58 -24.83 16 29 Si 0.91 21.12 29.56 -169.99 -5.02 16.09 16 30 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 31 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 32 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 33 H 0.07 0.77 7.93 -51.93 -0.41 0.36 16 34 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 35 H 0.07 0.82 6.00 -51.93 -0.31 0.51 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.12 1.06 8.04 -52.49 -0.42 0.64 16 40 H 0.08 0.94 8.00 -51.93 -0.42 0.52 16 41 H 0.08 1.11 6.22 -51.92 -0.32 0.79 16 42 H 0.07 0.69 6.52 -51.93 -0.34 0.35 16 43 H 0.06 0.68 7.68 -51.93 -0.40 0.28 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.40 6.63 8.12 -40.82 -0.33 6.29 16 46 H 0.05 1.01 7.82 -51.93 -0.41 0.60 16 47 H 0.06 1.32 7.98 -51.93 -0.41 0.90 16 48 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 50 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 51 H 0.05 0.82 7.82 -51.93 -0.41 0.42 16 52 H 0.25 6.89 8.31 -40.82 -0.34 6.56 16 LS Contribution 403.60 15.07 6.08 6.08 Total: -1.00 -29.38 403.60 -11.40 -40.77 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -8.56 Total: 11.03 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -3.88 Total: -12.18 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.11 Total: -51.15 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.38 -11.40 -40.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111478335.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.867 kcal (2) G-P(sol) polarization free energy of solvation -29.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds