Wall clock time and date at job start Wed Apr 1 2020 02:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38253 * 120.00372 * 2 1 4 4 C 1.38217 * 120.00015 * 180.02562 * 3 2 1 5 5 C 1.38250 * 119.99913 * 359.97438 * 4 3 2 6 6 C 1.38213 * 120.00306 * 359.95428 * 5 4 3 7 7 C 1.50700 * 119.99820 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46812 * 90.00263 * 7 6 5 9 9 O 1.21281 * 120.00353 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99534 * 179.97438 * 8 7 6 11 11 C 1.48107 * 127.84634 * 359.97438 * 10 8 7 12 12 C 1.54329 * 104.69459 * 219.76719 * 11 10 8 13 13 H 1.08996 * 111.85038 * 214.55098 * 12 11 10 14 14 C 1.54164 * 108.86902 * 90.47021 * 12 11 10 15 15 C 1.54838 * 104.33263 * 271.21233 * 14 12 11 16 16 C 1.54838 * 102.73756 * 321.82061 * 15 14 12 17 17 C 1.54931 * 104.82948 * 336.03393 * 12 11 10 18 18 C 1.53005 * 111.91937 * 238.59766 * 17 12 11 19 19 N 1.46501 * 109.46808 * 178.31341 * 18 17 12 20 20 C 1.36937 * 119.99599 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99865 * 0.02562 * 20 19 18 22 22 C 1.38808 * 119.99908 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00243 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00113 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47032 * 89.99960 * 24 22 20 26 26 H 1.48497 * 109.47126 * 210.00220 * 24 22 20 27 27 H 1.48507 * 109.46842 * 329.99846 * 24 22 20 28 28 C 1.48116 * 127.83725 * 180.02562 * 10 8 7 29 29 C 1.38218 * 119.99537 * 180.20802 * 2 1 3 30 30 H 1.09003 * 109.46694 * 90.00028 * 1 2 3 31 31 H 1.08996 * 109.47134 * 210.00382 * 1 2 3 32 32 H 1.09003 * 109.47052 * 330.00137 * 1 2 3 33 33 H 1.08003 * 119.99730 * 359.97438 * 3 2 1 34 34 H 1.07998 * 119.99692 * 179.97438 * 4 3 2 35 35 H 1.07998 * 119.99508 * 179.97438 * 5 4 3 36 36 H 1.08993 * 109.47510 * 329.99989 * 7 6 5 37 37 H 1.09006 * 109.46753 * 210.00084 * 7 6 5 38 38 H 1.09007 * 110.39315 * 338.56760 * 11 10 8 39 39 H 1.09003 * 110.39889 * 100.96270 * 11 10 8 40 40 H 1.09001 * 110.45774 * 29.92343 * 14 12 11 41 41 H 1.08996 * 110.45756 * 152.49483 * 14 12 11 42 42 H 1.08999 * 110.76246 * 80.14269 * 15 14 12 43 43 H 1.09009 * 110.75357 * 203.51068 * 15 14 12 44 44 H 1.09004 * 110.46239 * 156.90809 * 16 15 14 45 45 H 1.08997 * 110.46956 * 279.48503 * 16 15 14 46 46 H 1.08995 * 109.47204 * 298.31291 * 18 17 12 47 47 H 1.09001 * 109.47039 * 58.31699 * 18 17 12 48 48 H 0.96994 * 120.00224 * 359.97438 * 19 18 17 49 49 H 0.96996 * 120.00054 * 179.97438 * 23 22 20 50 50 H 1.09004 * 110.39160 * 259.05771 * 28 10 8 51 51 H 1.08995 * 110.39777 * 21.44861 * 28 10 8 52 52 H 1.08003 * 120.00305 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0002 -0.0005 6 6 3.5806 -1.1971 0.0010 7 6 4.3341 -2.5022 0.0015 8 6 4.5862 -2.9360 1.4226 9 8 4.1923 -2.2529 2.3441 10 7 5.2484 -4.0836 1.6693 11 6 5.8004 -5.0438 0.6859 12 6 5.5008 -6.4339 1.2855 13 1 6.2896 -7.1515 1.0600 14 6 4.1275 -6.9122 0.7738 15 6 3.1179 -6.3536 1.8064 16 6 3.8731 -6.5218 3.1476 17 6 5.3615 -6.1872 2.8087 18 6 6.3667 -7.0119 3.6152 19 7 6.2155 -6.7083 5.0404 20 6 7.0149 -7.3309 5.9616 21 1 7.7570 -8.0455 5.6373 22 6 6.8714 -7.0436 7.3120 23 7 7.6393 -7.6425 8.1975 24 14 5.5874 -5.8082 7.8728 25 1 4.3074 -6.5118 8.1408 26 1 6.0535 -5.1386 9.1136 27 1 5.3806 -4.7921 6.8097 28 6 5.5885 -4.6714 2.9857 29 6 2.1980 -1.1971 -0.0043 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6584 2.1326 -0.0004 34 1 4.1205 2.1325 -0.0010 35 1 5.3517 -0.0001 -0.0014 36 1 5.2861 -2.3724 -0.5130 37 1 3.7446 -3.2623 -0.5113 38 1 5.3020 -4.9300 -0.2769 39 1 6.8755 -4.9006 0.5774 40 1 3.9260 -6.5027 -0.2161 41 1 4.0872 -8.0012 0.7520 42 1 2.9070 -5.3022 1.6108 43 1 2.1989 -6.9399 1.8042 44 1 3.4854 -5.8272 3.8929 45 1 3.7925 -7.5486 3.5042 46 1 6.1828 -8.0732 3.4483 47 1 7.3791 -6.7640 3.2963 48 1 5.5498 -6.0657 5.3314 49 1 7.5393 -7.4414 9.1411 50 1 6.6308 -4.4701 3.2336 51 1 4.9302 -4.2767 3.7595 52 1 1.6580 -2.1324 -0.0082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112520052.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:23 Heat of formation + Delta-G solvation = -4.409044 kcal Electronic energy + Delta-G solvation = -30458.921065 eV Core-core repulsion = 26615.765057 eV Total energy + Delta-G solvation = -3843.156008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.81137 -39.71999 -38.29733 -34.91189 -34.22217 -33.69919 -32.24399 -31.75425 -30.07614 -29.81702 -28.14987 -27.05553 -25.54668 -25.45637 -23.66314 -22.34013 -21.88108 -21.11828 -20.18146 -19.26460 -18.83119 -17.61434 -16.98059 -16.67987 -16.35267 -15.73708 -15.48112 -14.84797 -14.67632 -14.48384 -14.32410 -14.00967 -13.79004 -13.64997 -13.43869 -13.27245 -13.17248 -13.08534 -12.96148 -12.58723 -12.54267 -12.28998 -12.04508 -12.01707 -11.72320 -11.61494 -11.27242 -11.17178 -10.94164 -10.88580 -10.82880 -10.68136 -10.54488 -10.41168 -10.36465 -10.05841 -9.84463 -9.57184 -8.94775 -8.89350 -8.75339 -8.59967 -7.22453 -5.76040 -3.11465 1.15281 1.23997 2.63913 2.93895 3.40409 3.44829 3.48642 3.61156 4.29068 4.40719 4.45136 4.51954 4.57866 4.61185 4.69972 4.77430 4.91634 5.00098 5.08543 5.14020 5.20111 5.21271 5.23750 5.28986 5.32230 5.34763 5.44646 5.46305 5.50013 5.55777 5.58609 5.63972 5.67200 5.75173 5.82210 5.85180 5.89689 5.94219 6.01300 6.09327 6.12219 6.16351 6.28448 6.34836 6.37545 6.41565 6.42802 6.47569 6.62830 6.67555 6.84311 7.58895 7.99461 8.18487 8.43053 9.22057 9.94709 10.14169 11.42307 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.002855 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.126424 B = 9803.996344 C =10663.833127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.060 4.060 7 C -0.097 4.097 8 C 0.533 3.467 9 O -0.532 6.532 10 N -0.619 5.619 11 C 0.105 3.895 12 C -0.099 4.099 13 H 0.096 0.904 14 C -0.113 4.113 15 C -0.122 4.122 16 C -0.107 4.107 17 C -0.078 4.078 18 C 0.180 3.820 19 N -0.754 5.754 20 C -0.243 4.243 21 H 0.090 0.910 22 C 0.006 3.994 23 N -0.934 5.934 24 Si 0.880 3.120 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.276 1.276 28 C 0.118 3.882 29 C -0.105 4.105 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.033 0.967 47 H 0.030 0.970 48 H 0.362 0.638 49 H 0.259 0.741 50 H 0.077 0.923 51 H 0.080 0.920 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.836 11.463 -24.998 29.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.128 4.128 6 C -0.060 4.060 7 C -0.137 4.137 8 C 0.321 3.679 9 O -0.408 6.408 10 N -0.354 5.354 11 C -0.018 4.018 12 C -0.118 4.118 13 H 0.114 0.886 14 C -0.151 4.151 15 C -0.159 4.159 16 C -0.145 4.145 17 C -0.080 4.080 18 C 0.052 3.948 19 N -0.400 5.400 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.190 4.190 23 N -0.582 5.582 24 Si 0.710 3.290 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.202 1.202 28 C -0.004 4.004 29 C -0.123 4.123 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.047 0.953 48 H 0.194 0.806 49 H 0.069 0.931 50 H 0.095 0.905 51 H 0.099 0.901 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.931 11.801 -24.417 29.240 hybrid contribution -0.699 0.813 0.656 1.256 sum -11.630 12.614 -23.761 29.308 Atomic orbital electron populations 1.20785 0.91245 1.02885 1.02130 1.19865 0.96021 0.93104 0.99724 1.21005 0.94288 0.97400 1.01368 1.21070 0.94308 0.97852 1.00129 1.20953 0.99681 0.92010 1.00205 1.19260 0.93516 0.93609 0.99659 1.20647 1.02054 0.96059 0.94948 1.20047 0.77364 0.79418 0.91049 1.90754 1.50747 1.52911 1.46401 1.48986 1.55741 1.21474 1.09169 1.22543 0.98798 0.88199 0.92298 1.22700 0.98478 0.95976 0.94691 0.88572 1.22383 0.93938 1.00696 0.98042 1.22435 0.97647 1.00451 0.95388 1.22706 0.92903 1.02200 0.96670 1.22698 0.96592 0.94531 0.94137 1.20534 0.94487 0.95825 0.83947 1.42690 1.44214 1.51518 1.01553 1.19032 1.12825 1.18727 0.86734 0.89192 1.24645 0.98980 0.99597 0.95734 1.69697 1.41486 1.45893 1.01124 0.86618 0.82182 0.81968 0.78235 1.21039 1.21680 1.20220 1.22434 1.01301 0.91633 0.85014 1.20838 0.93334 0.97608 1.00505 0.91271 0.91520 0.91574 0.86272 0.86090 0.86316 0.88118 0.88178 0.90423 0.90902 0.91916 0.91278 0.92106 0.91907 0.91922 0.90799 0.94959 0.95251 0.80568 0.93067 0.90516 0.90133 0.86361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.09 -0.89 5.88 -104.62 -0.62 -1.50 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 4 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 5 C -0.11 -1.20 9.70 -39.59 -0.38 -1.58 16 6 C -0.06 -0.67 4.37 -104.62 -0.46 -1.13 16 7 C -0.10 -0.94 4.81 -29.03 -0.14 -1.08 16 8 C 0.53 7.34 7.91 -10.98 -0.09 7.26 16 9 O -0.53 -9.83 16.30 5.56 0.09 -9.74 16 10 N -0.62 -7.95 2.59 -169.46 -0.44 -8.39 16 11 C 0.10 0.99 6.35 -2.46 -0.02 0.97 16 12 C -0.10 -1.05 3.56 -88.30 -0.31 -1.36 16 13 H 0.10 0.94 7.88 -51.93 -0.41 0.53 16 14 C -0.11 -1.07 6.27 -25.15 -0.16 -1.23 16 15 C -0.12 -1.40 6.54 -24.79 -0.16 -1.56 16 16 C -0.11 -1.56 5.59 -24.00 -0.13 -1.69 16 17 C -0.08 -1.13 0.69 -151.05 -0.10 -1.24 16 18 C 0.18 3.27 5.19 -4.04 -0.02 3.24 16 19 N -0.75 -17.55 5.08 -59.91 -0.30 -17.85 16 20 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 21 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 22 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -29.50 13.97 55.49 0.78 -28.72 16 24 Si 0.88 22.64 27.74 -169.99 -4.71 17.93 16 25 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 27 H -0.28 -6.81 6.52 56.52 0.37 -6.45 16 28 C 0.12 1.86 5.52 -2.48 -0.01 1.85 16 29 C -0.10 -1.14 9.36 -39.58 -0.37 -1.51 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 37 H 0.10 0.75 7.89 -51.93 -0.41 0.34 16 38 H 0.08 0.53 6.58 -51.93 -0.34 0.19 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.48 7.44 -51.93 -0.39 0.10 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.75 7.76 -51.93 -0.40 0.34 16 43 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 44 H 0.06 1.01 7.52 -51.93 -0.39 0.62 16 45 H 0.07 1.13 8.01 -51.93 -0.42 0.71 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.36 8.43 5.02 -40.82 -0.21 8.23 16 49 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 50 H 0.08 1.29 7.95 -51.93 -0.41 0.87 16 51 H 0.08 1.48 7.24 -51.93 -0.38 1.11 16 52 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 408.89 15.07 6.16 6.16 Total: -1.00 -34.66 408.89 -10.91 -45.57 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -8.83 Total: 6.15 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -3.65 Total: -11.11 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.03 Total: -54.97 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.71 Total: 17.93 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.66 -10.91 -45.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112520052.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.160 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds