Wall clock time and date at job start Wed Apr 1 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47000 * 2 1 4 4 C 1.50698 * 109.47151 * 120.00313 * 2 1 3 5 5 C 1.38242 * 119.99765 * 119.99891 * 4 2 1 6 6 C 1.38230 * 119.99571 * 179.97438 * 5 4 2 7 7 C 1.38234 * 120.00338 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99980 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47038 * 90.00279 * 8 7 6 10 10 C 1.50702 * 109.47038 * 179.97438 * 9 8 7 11 11 O 1.21273 * 120.00253 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99629 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99621 * 179.72206 * 12 10 9 14 14 H 1.08997 * 115.52021 * 9.41995 * 13 12 10 15 15 C 1.53008 * 117.44528 * 224.00119 * 13 12 10 16 16 H 1.09004 * 119.53432 * 4.12453 * 15 13 12 17 17 C 1.54389 * 118.12200 * 160.80998 * 15 13 12 18 18 N 1.48145 * 104.61526 * 87.19694 * 17 15 13 19 19 C 1.36932 * 127.83765 * 140.41579 * 18 17 15 20 20 H 1.07997 * 120.00096 * 344.89333 * 19 18 17 21 21 C 1.38814 * 119.99916 * 164.89825 * 19 18 17 22 22 N 1.31614 * 120.00150 * 350.65388 * 21 19 18 23 23 Si 1.86800 * 119.99981 * 170.66050 * 21 19 18 24 24 H 1.48504 * 109.47181 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47157 * 119.99449 * 23 21 19 26 26 H 1.48500 * 109.47229 * 239.99820 * 23 21 19 27 27 C 1.51691 * 104.54700 * 320.18551 * 18 17 15 28 28 C 1.53011 * 117.44290 * 154.83527 * 13 12 10 29 29 H 1.08997 * 119.53440 * 355.88275 * 28 13 12 30 30 C 1.38232 * 119.99959 * 0.25531 * 7 6 5 31 31 C 1.38234 * 120.00145 * 299.97669 * 4 2 1 32 32 H 1.08998 * 109.46920 * 59.99393 * 1 2 3 33 33 H 1.09001 * 109.46861 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46759 * 299.99557 * 1 2 3 35 35 H 1.09001 * 109.46759 * 240.00443 * 2 1 3 36 36 H 1.08996 * 109.46818 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.47326 * 300.00313 * 3 2 1 38 38 H 1.09001 * 109.47002 * 60.00592 * 3 2 1 39 39 H 1.08004 * 119.99877 * 359.97438 * 5 4 2 40 40 H 1.08003 * 119.99523 * 180.02562 * 6 5 4 41 41 H 1.08991 * 109.47194 * 330.00422 * 8 7 6 42 42 H 1.09003 * 109.46962 * 209.99818 * 8 7 6 43 43 H 1.09001 * 109.47345 * 59.99607 * 9 8 7 44 44 H 1.09006 * 109.46780 * 300.00123 * 9 8 7 45 45 H 0.97000 * 120.00125 * 0.02562 * 12 10 9 46 46 H 1.09000 * 110.40077 * 205.97547 * 17 15 13 47 47 H 1.08993 * 110.40880 * 328.40786 * 17 15 13 48 48 H 0.97001 * 120.00244 * 180.02562 * 22 21 19 49 49 H 1.09006 * 111.96254 * 281.12846 * 27 18 17 50 50 H 1.09004 * 110.49447 * 157.55927 * 27 18 17 51 51 H 1.07997 * 120.00273 * 179.72801 * 30 7 6 52 52 H 1.07999 * 119.99872 * 0.02562 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8272 -1.8344 1.1034 6 6 3.2883 -2.4858 2.2321 7 6 2.9544 -2.0136 3.4876 8 6 3.4568 -2.7241 4.7180 9 6 4.8046 -2.1317 5.1345 10 6 5.3067 -2.8418 6.3652 11 8 4.6513 -3.7341 6.8603 12 7 6.4845 -2.4858 6.9152 13 6 6.9697 -3.1719 8.1152 14 1 6.4073 -4.0581 8.4091 15 6 7.5583 -2.3078 9.2323 16 1 7.5392 -1.2220 9.1384 17 6 7.6555 -2.9157 10.6481 18 7 8.9583 -3.6207 10.6636 19 6 9.8679 -3.6823 11.6853 20 1 9.7965 -2.9937 12.5141 21 6 10.8819 -4.6299 11.6556 22 7 10.8652 -5.5834 10.7485 23 14 12.2701 -4.5517 12.9031 24 1 12.0574 -3.3940 13.8085 25 1 12.2910 -5.8049 13.6995 26 1 13.5651 -4.3944 12.1934 27 6 9.0587 -4.2660 9.2945 28 6 8.4801 -3.1823 8.3595 29 1 9.1477 -2.7480 7.6154 30 6 2.1550 -0.8931 3.6145 31 6 1.6989 -0.2380 2.4860 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8901 35 1 1.8933 -0.5138 -0.8901 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6768 1.9563 0.8901 39 1 3.0877 -2.2036 0.1225 40 1 3.9096 -3.3637 2.1329 41 1 3.5780 -3.7853 4.5008 42 1 2.7388 -2.5987 5.5286 43 1 4.6835 -1.0704 5.3517 44 1 5.5225 -2.2570 4.3239 45 1 7.0088 -1.7723 6.5190 46 1 7.6405 -2.1282 11.4016 47 1 6.8404 -3.6195 10.8163 48 1 11.5736 -6.2458 10.7280 49 1 8.4669 -5.1792 9.2298 50 1 10.0999 -4.4683 9.0433 51 1 1.8904 -0.5267 4.5954 52 1 1.0779 0.6401 2.5851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114557884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:20 Heat of formation + Delta-G solvation = 24.843483 kcal Electronic energy + Delta-G solvation = -27977.046329 eV Core-core repulsion = 24135.158806 eV Total energy + Delta-G solvation = -3841.887523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.18363 -39.67608 -38.26410 -36.29060 -34.36541 -33.35705 -32.56556 -31.21083 -30.30227 -29.18438 -27.57411 -27.13898 -25.87668 -24.86849 -23.17399 -22.29010 -21.49496 -20.51395 -20.23215 -19.96153 -19.20516 -17.22996 -16.87524 -16.55588 -16.23397 -16.00137 -15.33609 -15.23058 -14.70584 -14.35611 -14.26340 -14.03486 -13.89750 -13.66782 -13.54341 -13.27870 -13.06989 -12.97272 -12.74043 -12.65511 -12.21173 -12.11710 -11.97556 -11.73558 -11.51483 -11.48964 -11.45028 -11.22432 -11.00521 -10.98785 -10.93515 -10.84414 -10.43163 -10.19586 -10.12612 -9.82491 -9.67078 -9.20278 -9.18391 -8.76667 -8.74751 -8.32936 -6.87491 -5.78820 -3.11773 1.04142 1.13982 2.65097 3.12870 3.38452 3.44341 3.46842 3.48661 4.24915 4.31374 4.36871 4.46746 4.51667 4.66372 4.73563 4.76083 4.81464 4.93300 5.01065 5.04642 5.15924 5.18640 5.19164 5.22514 5.34867 5.37193 5.38959 5.39205 5.44624 5.54083 5.56503 5.61683 5.74370 5.76571 5.79428 5.79728 5.86471 5.89653 5.97712 6.15237 6.17145 6.24250 6.34543 6.40387 6.53280 6.69426 6.74111 6.80817 6.89598 7.30711 7.51479 7.59041 7.70283 8.15006 8.29752 9.06852 9.73401 10.50178 11.36352 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.036795 B = 0.001433 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.799900 B =19534.038655 C =19560.431661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.083 4.083 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.084 4.084 8 C -0.065 4.065 9 C -0.133 4.133 10 C 0.513 3.487 11 O -0.540 6.540 12 N -0.699 5.699 13 C 0.094 3.906 14 H 0.131 0.869 15 C -0.183 4.183 16 H 0.102 0.898 17 C 0.158 3.842 18 N -0.599 5.599 19 C -0.224 4.224 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.917 5.917 23 Si 0.912 3.088 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.185 3.815 28 C -0.178 4.178 29 H 0.101 0.899 30 C -0.113 4.113 31 C -0.113 4.113 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.399 0.601 46 H 0.051 0.949 47 H 0.026 0.974 48 H 0.254 0.746 49 H 0.032 0.968 50 H 0.091 0.909 51 H 0.122 0.878 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.456 13.085 -23.497 32.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 C -0.202 4.202 4 C -0.083 4.083 5 C -0.135 4.135 6 C -0.131 4.131 7 C -0.084 4.084 8 C -0.103 4.103 9 C -0.173 4.173 10 C 0.300 3.700 11 O -0.416 6.416 12 N -0.348 5.348 13 C -0.012 4.012 14 H 0.149 0.851 15 C -0.204 4.204 16 H 0.120 0.880 17 C 0.031 3.969 18 N -0.323 5.323 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.563 5.563 23 Si 0.742 3.258 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.061 3.939 28 C -0.199 4.199 29 H 0.119 0.881 30 C -0.131 4.131 31 C -0.131 4.131 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.232 0.768 46 H 0.070 0.930 47 H 0.044 0.956 48 H 0.064 0.936 49 H 0.050 0.950 50 H 0.110 0.890 51 H 0.140 0.860 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.714 12.308 -23.017 32.116 hybrid contribution 1.136 0.482 0.350 1.283 sum -17.578 12.790 -22.667 31.406 Atomic orbital electron populations 1.21862 0.94356 1.02038 1.01907 1.20129 0.95943 0.96059 0.95426 1.21860 1.01290 0.95098 1.01912 1.19848 0.97953 0.95841 0.94629 1.21043 0.98258 0.95634 0.98527 1.21076 1.00052 1.00040 0.91914 1.19915 0.97751 0.95932 0.94768 1.20334 0.95439 0.99736 0.94810 1.21645 0.98379 1.01144 0.96123 1.20642 0.80652 0.83510 0.85214 1.90711 1.56499 1.30951 1.63468 1.45439 1.21748 1.38749 1.28835 1.21878 0.95357 0.97990 0.85928 0.85128 1.24359 1.05038 0.97133 0.93903 0.87981 1.21060 0.89402 0.94808 0.91586 1.46045 1.15939 1.58639 1.11699 1.19063 1.04551 1.12186 0.99445 0.90478 1.24867 1.00281 0.96084 0.99156 1.69894 1.33938 1.15783 1.36704 0.86053 0.82016 0.77338 0.80386 1.20398 1.21715 1.21672 1.21672 1.00759 0.89927 0.81566 1.24564 0.90549 1.03639 1.01187 0.88088 1.21072 0.97954 0.95464 0.98649 1.20939 1.00340 0.99933 0.91914 0.92433 0.92527 0.92435 0.90581 0.92496 0.92429 0.92437 0.86272 0.85981 0.90055 0.90089 0.88860 0.88804 0.76766 0.93022 0.95627 0.93626 0.95003 0.89041 0.86032 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.01 37.16 0.33 -0.41 16 2 C -0.06 -0.33 3.09 -91.77 -0.28 -0.61 16 3 C -0.14 -0.74 9.01 37.16 0.33 -0.41 16 4 C -0.08 -0.61 4.78 -104.62 -0.50 -1.11 16 5 C -0.12 -0.90 9.67 -39.58 -0.38 -1.28 16 6 C -0.11 -0.93 9.70 -39.59 -0.38 -1.32 16 7 C -0.08 -0.73 5.13 -104.62 -0.54 -1.26 16 8 C -0.07 -0.62 4.64 -27.88 -0.13 -0.75 16 9 C -0.13 -1.19 5.68 -27.88 -0.16 -1.35 16 10 C 0.51 6.81 7.83 -10.98 -0.09 6.72 16 11 O -0.54 -9.45 15.55 5.56 0.09 -9.36 16 12 N -0.70 -9.11 5.56 -53.80 -0.30 -9.41 16 13 C 0.09 1.59 5.98 -67.92 -0.41 1.18 16 14 H 0.13 2.52 7.40 -51.93 -0.38 2.14 16 15 C -0.18 -3.26 7.05 -89.29 -0.63 -3.89 16 16 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 17 C 0.16 3.37 7.05 -2.41 -0.02 3.36 16 18 N -0.60 -15.43 3.45 -165.83 -0.57 -16.00 16 19 C -0.22 -6.27 10.36 -15.06 -0.16 -6.43 16 20 H 0.08 2.09 7.85 -52.49 -0.41 1.67 16 21 C -0.01 -0.20 5.41 -17.43 -0.09 -0.29 16 22 N -0.92 -26.90 10.84 55.49 0.60 -26.30 16 23 Si 0.91 21.97 29.56 -169.99 -5.03 16.94 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.19 4.45 5.91 -0.38 0.00 4.45 16 28 C -0.18 -3.34 6.96 -89.29 -0.62 -3.96 16 29 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 30 C -0.11 -0.93 9.70 -39.58 -0.38 -1.31 16 31 C -0.11 -0.86 8.71 -39.58 -0.34 -1.20 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.29 7.39 -51.93 -0.38 -0.09 16 35 H 0.08 0.40 7.88 -51.93 -0.41 -0.01 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.29 7.39 -51.93 -0.38 -0.09 16 39 H 0.12 0.73 7.95 -52.48 -0.42 0.31 16 40 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 42 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.40 4.00 8.83 -40.82 -0.36 3.64 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 50 H 0.09 2.43 6.58 -51.93 -0.34 2.09 16 51 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 52 H 0.12 0.73 7.10 -52.49 -0.37 0.36 16 LS Contribution 420.40 15.07 6.34 6.34 Total: -1.00 -32.55 420.40 -12.25 -44.81 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.93 Total: 2.86 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -4.45 Total: -9.87 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.27 Total: -51.71 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -32.55 -12.25 -44.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114557884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.650 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds