Wall clock time and date at job start Wed Apr 1 2020 03:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47056 * 2 1 4 4 C 1.38232 * 120.00058 * 269.73016 * 3 2 1 5 5 C 1.38232 * 119.99970 * 179.74493 * 4 3 2 6 6 C 1.38241 * 119.99997 * 0.52711 * 5 4 3 7 7 C 1.50703 * 119.99832 * 179.76883 * 6 5 4 8 8 H 1.09005 * 109.46762 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47439 * 299.97591 * 7 6 5 10 10 C 1.52998 * 109.47095 * 59.97692 * 7 6 5 11 11 C 1.50701 * 109.47140 * 174.99498 * 10 7 6 12 12 O 1.21285 * 119.99935 * 0.02562 * 11 10 7 13 13 N 1.34770 * 120.00189 * 179.97438 * 11 10 7 14 14 C 1.46508 * 120.00128 * 180.02562 * 13 11 10 15 15 H 1.08996 * 115.51401 * 9.41908 * 14 13 11 16 16 C 1.52998 * 117.44326 * 224.00718 * 14 13 11 17 17 H 1.09004 * 119.54271 * 4.11268 * 16 14 13 18 18 C 1.54431 * 118.09290 * 160.74542 * 16 14 13 19 19 N 1.48144 * 104.56238 * 87.28880 * 18 16 14 20 20 C 1.36935 * 127.83876 * 140.40107 * 19 18 16 21 21 H 1.08003 * 120.00235 * 195.57871 * 20 19 18 22 22 C 1.38809 * 120.00413 * 15.57686 * 20 19 18 23 23 N 1.31629 * 119.99634 * 9.09333 * 22 20 19 24 24 Si 1.86793 * 120.00459 * 189.09814 * 22 20 19 25 25 H 1.48501 * 109.47159 * 89.99804 * 24 22 20 26 26 H 1.48498 * 109.47235 * 209.99697 * 24 22 20 27 27 H 1.48500 * 109.46991 * 329.99664 * 24 22 20 28 28 C 1.48148 * 104.32354 * 320.40419 * 19 18 16 29 29 C 1.53000 * 117.44230 * 154.83730 * 14 13 11 30 30 H 1.09004 * 119.53984 * 354.28424 * 29 14 13 31 31 C 1.38227 * 119.99764 * 359.74569 * 6 5 4 32 32 C 1.38235 * 120.00337 * 359.97438 * 31 6 5 33 33 H 1.09000 * 109.47407 * 299.99702 * 1 2 3 34 34 H 1.09003 * 109.47377 * 60.00172 * 1 2 3 35 35 H 1.09001 * 109.47345 * 179.97438 * 1 2 3 36 36 H 1.09000 * 109.46896 * 119.99890 * 2 1 3 37 37 H 1.08998 * 109.46893 * 240.00296 * 2 1 3 38 38 H 1.08005 * 119.99901 * 359.97438 * 4 3 2 39 39 H 1.08008 * 120.00091 * 180.29256 * 5 4 3 40 40 H 1.09003 * 109.47030 * 59.99698 * 9 7 6 41 41 H 1.08998 * 109.47419 * 180.02562 * 9 7 6 42 42 H 1.09005 * 109.46989 * 300.00357 * 9 7 6 43 43 H 1.08998 * 109.47048 * 294.99808 * 10 7 6 44 44 H 1.09005 * 109.47234 * 54.99606 * 10 7 6 45 45 H 0.97002 * 120.00212 * 0.02562 * 13 11 10 46 46 H 1.09003 * 110.44560 * 328.51786 * 18 16 14 47 47 H 1.09002 * 110.42834 * 206.04978 * 18 16 14 48 48 H 0.96991 * 119.99698 * 179.97438 * 23 22 20 49 49 H 1.08991 * 110.40640 * 280.79661 * 28 19 18 50 50 H 1.09002 * 110.40744 * 158.36459 * 28 19 18 51 51 H 1.08001 * 119.99805 * 180.02562 * 31 6 5 52 52 H 1.07994 * 120.00346 * 180.02562 * 32 31 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2680 2.0706 -1.1971 5 6 2.7237 3.3756 -1.1971 6 6 2.9542 4.0273 0.0001 7 6 3.4560 5.4483 0.0000 8 1 3.5768 5.7910 1.0277 9 6 4.8038 5.5133 -0.7210 10 6 2.4480 6.3451 -0.7214 11 6 2.8881 7.7825 -0.6151 12 8 3.9080 8.0620 -0.0211 13 7 2.1491 8.7572 -1.1808 14 6 2.5774 10.1545 -1.0779 15 1 3.5767 10.3106 -0.6716 16 6 1.5088 11.1965 -0.7414 17 1 0.4912 10.8719 -0.5237 18 6 1.9729 12.5618 -0.1885 19 7 2.2296 13.3839 -1.3938 20 6 1.9427 14.7094 -1.5833 21 1 1.9478 15.1260 -2.5797 22 6 1.6452 15.5177 -0.4947 23 7 1.8119 15.0615 0.7287 24 14 1.0082 17.2526 -0.7658 25 1 -0.4749 17.2296 -0.8385 26 1 1.4351 18.1186 0.3623 27 1 1.5578 17.7887 -2.0369 28 6 2.8672 12.4468 -2.3478 29 6 2.0986 11.1205 -2.1635 30 1 1.5431 10.7354 -3.0186 31 6 2.7239 3.3757 1.1971 32 6 2.2626 2.0725 1.1972 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 -0.3634 -1.0277 -0.0005 36 1 1.8933 -0.5138 0.8900 37 1 1.8933 -0.5138 -0.8900 38 1 2.0926 1.5598 -2.1324 39 1 2.9034 3.8849 -2.1325 40 1 4.6830 5.1705 -1.7486 41 1 5.1670 6.5410 -0.7206 42 1 5.5220 4.8743 -0.2070 43 1 2.3933 6.0586 -1.7717 44 1 1.4661 6.2309 -0.2621 45 1 1.3337 8.5337 -1.6562 46 1 2.8868 12.4458 0.3942 47 1 1.1884 13.0128 0.4191 48 1 1.6044 15.6264 1.4894 49 1 3.9206 12.3129 -2.1024 50 1 2.7572 12.8109 -3.3693 51 1 2.9035 3.8849 2.1325 52 1 2.0823 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114836041.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:20 Heat of formation + Delta-G solvation = 26.310202 kcal Electronic energy + Delta-G solvation = -28476.198757 eV Core-core repulsion = 24634.374836 eV Total energy + Delta-G solvation = -3841.823921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -40.32962 -39.60297 -38.40858 -35.98701 -34.45605 -33.30044 -32.64809 -31.19289 -30.38564 -29.07464 -27.89853 -27.14700 -25.57793 -24.59165 -23.08537 -22.47308 -21.56376 -20.58510 -20.37008 -19.67939 -19.28178 -17.31886 -16.89091 -16.33825 -16.19425 -15.89990 -15.35770 -15.24073 -14.72420 -14.40127 -14.20239 -14.02680 -13.72990 -13.64324 -13.40991 -13.32013 -13.25849 -13.09531 -12.75016 -12.47481 -12.19937 -12.09201 -11.78442 -11.69087 -11.52943 -11.42952 -11.29127 -11.26837 -11.00196 -10.94281 -10.83330 -10.82921 -10.40412 -10.18141 -10.15742 -9.74113 -9.66377 -9.18743 -9.16984 -8.75789 -8.74087 -8.30685 -6.87190 -5.79644 -3.14332 1.06299 1.15331 2.66264 3.13560 3.38407 3.43376 3.45635 3.49029 4.30779 4.35487 4.43352 4.46640 4.51812 4.62800 4.75403 4.81787 4.92655 4.96659 4.98566 5.13918 5.16400 5.21594 5.24190 5.29298 5.36837 5.40148 5.44134 5.49294 5.54519 5.56660 5.58417 5.73444 5.79097 5.82519 5.83424 5.88294 5.89809 6.00680 6.13913 6.16401 6.23399 6.33372 6.34686 6.45497 6.52196 6.68137 6.75581 6.83013 6.88374 7.36288 7.53674 7.60230 7.71609 8.20506 8.31875 9.10689 9.73404 10.50419 11.34634 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.027944 B = 0.001604 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.758247 B =17450.897440 C =17628.294066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.077 4.077 7 C -0.035 4.035 8 H 0.087 0.913 9 C -0.149 4.149 10 C -0.132 4.132 11 C 0.515 3.485 12 O -0.535 6.535 13 N -0.700 5.700 14 C 0.096 3.904 15 H 0.131 0.869 16 C -0.179 4.179 17 H 0.101 0.899 18 C 0.185 3.815 19 N -0.593 5.593 20 C -0.228 4.228 21 H 0.077 0.923 22 C -0.005 4.005 23 N -0.915 5.915 24 Si 0.914 3.086 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.155 3.845 29 C -0.184 4.184 30 H 0.103 0.897 31 C -0.112 4.112 32 C -0.116 4.116 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.049 0.951 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.398 0.602 46 H 0.026 0.974 47 H 0.091 0.909 48 H 0.255 0.745 49 H 0.027 0.973 50 H 0.051 0.949 51 H 0.122 0.878 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 -30.544 -3.095 30.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.135 4.135 5 C -0.129 4.129 6 C -0.077 4.077 7 C -0.054 4.054 8 H 0.106 0.894 9 C -0.206 4.206 10 C -0.172 4.172 11 C 0.301 3.699 12 O -0.411 6.411 13 N -0.348 5.348 14 C -0.010 4.010 15 H 0.149 0.851 16 C -0.201 4.201 17 H 0.119 0.881 18 C 0.059 3.941 19 N -0.317 5.317 20 C -0.356 4.356 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.561 5.561 24 Si 0.744 3.256 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.029 3.971 29 C -0.205 4.205 30 H 0.121 0.879 31 C -0.130 4.130 32 C -0.134 4.134 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.068 0.932 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.232 0.768 46 H 0.044 0.956 47 H 0.109 0.891 48 H 0.065 0.935 49 H 0.044 0.956 50 H 0.070 0.930 51 H 0.140 0.860 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.726 -30.081 -2.542 30.197 hybrid contribution -0.971 0.708 -0.400 1.267 sum -1.698 -29.373 -2.941 29.568 Atomic orbital electron populations 1.21749 0.94718 1.01656 1.02294 1.20536 0.96200 0.92770 1.02709 1.19882 0.99524 0.96252 0.93273 1.20995 1.00173 0.94907 0.97430 1.20994 0.99556 0.94662 0.97720 1.19902 0.98839 0.95812 0.93188 1.19876 0.94606 0.89528 1.01390 0.89445 1.21967 0.95580 1.03897 0.99177 1.21752 1.00900 0.91559 1.03039 1.20582 0.83755 0.87227 0.78304 1.90683 1.24711 1.83826 1.41916 1.45434 1.27197 1.06087 1.56078 1.21838 0.99110 0.77192 1.02871 0.85146 1.24713 0.97872 0.98485 0.98988 0.88115 1.21062 0.99410 0.84099 0.89505 1.45178 1.68186 1.06094 1.12198 1.18998 1.41006 0.82696 0.92925 0.90513 1.24910 1.01897 0.98222 0.95231 1.69903 1.52567 1.36473 0.97112 0.86099 0.78656 0.83747 0.77126 1.21527 1.21632 1.20526 1.21122 0.94091 0.87251 0.94670 1.24261 1.05143 0.98327 0.92790 0.87931 1.21099 0.99405 0.94781 0.97711 1.21004 1.00062 0.94908 0.97472 0.92524 0.92540 0.92467 0.91162 0.91166 0.86314 0.86107 0.93200 0.90024 0.92805 0.88879 0.88822 0.76848 0.95579 0.89122 0.93513 0.95550 0.93006 0.85982 0.86278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.89 37.16 0.37 -0.41 16 2 C -0.08 -0.48 6.07 -27.88 -0.17 -0.65 16 3 C -0.09 -0.68 5.13 -104.62 -0.54 -1.22 16 4 C -0.12 -0.90 9.70 -39.59 -0.38 -1.28 16 5 C -0.11 -0.91 8.76 -39.58 -0.35 -1.25 16 6 C -0.08 -0.69 4.78 -104.62 -0.50 -1.19 16 7 C -0.04 -0.34 2.21 -91.77 -0.20 -0.55 16 8 H 0.09 0.97 7.69 -51.93 -0.40 0.57 16 9 C -0.15 -1.53 8.75 37.15 0.32 -1.21 16 10 C -0.13 -1.22 4.91 -27.88 -0.14 -1.35 16 11 C 0.51 6.76 7.55 -10.99 -0.08 6.68 16 12 O -0.53 -9.08 13.53 5.55 0.08 -9.01 16 13 N -0.70 -9.05 5.56 -53.80 -0.30 -9.35 16 14 C 0.10 1.60 5.98 -67.93 -0.41 1.20 16 15 H 0.13 2.50 7.40 -51.93 -0.38 2.12 16 16 C -0.18 -3.41 7.05 -89.27 -0.63 -4.04 16 17 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 18 C 0.19 4.51 5.70 -2.39 -0.01 4.50 16 19 N -0.59 -15.27 3.38 -168.84 -0.57 -15.84 16 20 C -0.23 -6.37 10.35 -15.06 -0.16 -6.52 16 21 H 0.08 2.06 7.84 -52.48 -0.41 1.65 16 22 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 23 N -0.91 -26.93 10.86 55.49 0.60 -26.33 16 24 Si 0.91 21.94 29.56 -169.99 -5.03 16.92 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.16 3.27 7.04 -2.41 -0.02 3.25 16 29 C -0.18 -3.22 7.05 -89.29 -0.63 -3.85 16 30 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 31 C -0.11 -0.98 9.67 -39.59 -0.38 -1.36 16 32 C -0.12 -0.93 9.70 -39.58 -0.38 -1.31 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 37 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 38 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 39 H 0.12 0.84 7.16 -52.48 -0.38 0.46 16 40 H 0.05 0.45 7.39 -51.93 -0.38 0.06 16 41 H 0.08 1.04 5.95 -51.93 -0.31 0.73 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.68 7.57 -51.93 -0.39 0.29 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.40 3.97 8.83 -40.82 -0.36 3.61 16 46 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 2.45 6.51 -51.93 -0.34 2.12 16 48 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 51 H 0.12 0.95 7.95 -52.49 -0.42 0.54 16 52 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 416.24 15.07 6.27 6.27 Total: -1.00 -32.15 416.24 -12.15 -44.30 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -8.82 Total: 3.87 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -4.38 Total: -10.82 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.27 Total: -51.52 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.15 -12.15 -44.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114836041.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.605 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds