Wall clock time and date at job start Wed Apr 1 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47056 * 2 1 4 4 C 1.38232 * 120.00058 * 269.73016 * 3 2 1 5 5 C 1.38232 * 119.99970 * 179.74493 * 4 3 2 6 6 C 1.38241 * 119.99997 * 0.52711 * 5 4 3 7 7 C 1.50703 * 119.99832 * 179.76883 * 6 5 4 8 8 H 1.09005 * 109.46762 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47439 * 299.97591 * 7 6 5 10 10 C 1.52998 * 109.47095 * 59.97692 * 7 6 5 11 11 C 1.50701 * 109.47140 * 174.99498 * 10 7 6 12 12 O 1.21285 * 119.99935 * 0.02562 * 11 10 7 13 13 N 1.34770 * 120.00189 * 179.97438 * 11 10 7 14 14 C 1.46508 * 120.00128 * 180.02562 * 13 11 10 15 15 H 1.08996 * 115.51401 * 9.41908 * 14 13 11 16 16 C 1.52998 * 117.44326 * 224.00718 * 14 13 11 17 17 H 1.09004 * 119.54271 * 4.11268 * 16 14 13 18 18 C 1.54431 * 118.09290 * 160.74542 * 16 14 13 19 19 N 1.48144 * 104.56238 * 87.28880 * 18 16 14 20 20 C 1.36935 * 127.83876 * 140.40107 * 19 18 16 21 21 H 1.08003 * 120.00235 * 195.57871 * 20 19 18 22 22 C 1.38809 * 120.00413 * 15.57686 * 20 19 18 23 23 N 1.31629 * 119.99634 * 9.09333 * 22 20 19 24 24 Si 1.86793 * 120.00459 * 189.09814 * 22 20 19 25 25 H 1.48501 * 109.47159 * 89.99804 * 24 22 20 26 26 H 1.48498 * 109.47235 * 209.99697 * 24 22 20 27 27 H 1.48500 * 109.46991 * 329.99664 * 24 22 20 28 28 C 1.48148 * 104.32354 * 320.40419 * 19 18 16 29 29 C 1.53000 * 117.44230 * 154.83730 * 14 13 11 30 30 H 1.09004 * 119.53984 * 354.28424 * 29 14 13 31 31 C 1.38227 * 119.99764 * 359.74569 * 6 5 4 32 32 C 1.38235 * 120.00337 * 359.97438 * 31 6 5 33 33 H 1.09000 * 109.47407 * 299.99702 * 1 2 3 34 34 H 1.09003 * 109.47377 * 60.00172 * 1 2 3 35 35 H 1.09001 * 109.47345 * 179.97438 * 1 2 3 36 36 H 1.09000 * 109.46896 * 119.99890 * 2 1 3 37 37 H 1.08998 * 109.46893 * 240.00296 * 2 1 3 38 38 H 1.08005 * 119.99901 * 359.97438 * 4 3 2 39 39 H 1.08008 * 120.00091 * 180.29256 * 5 4 3 40 40 H 1.09003 * 109.47030 * 59.99698 * 9 7 6 41 41 H 1.08998 * 109.47419 * 180.02562 * 9 7 6 42 42 H 1.09005 * 109.46989 * 300.00357 * 9 7 6 43 43 H 1.08998 * 109.47048 * 294.99808 * 10 7 6 44 44 H 1.09005 * 109.47234 * 54.99606 * 10 7 6 45 45 H 0.97002 * 120.00212 * 0.02562 * 13 11 10 46 46 H 1.09003 * 110.44560 * 328.51786 * 18 16 14 47 47 H 1.09002 * 110.42834 * 206.04978 * 18 16 14 48 48 H 0.96991 * 119.99698 * 179.97438 * 23 22 20 49 49 H 1.08991 * 110.40640 * 280.79661 * 28 19 18 50 50 H 1.09002 * 110.40744 * 158.36459 * 28 19 18 51 51 H 1.08001 * 119.99805 * 180.02562 * 31 6 5 52 52 H 1.07994 * 120.00346 * 180.02562 * 32 31 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2680 2.0706 -1.1971 5 6 2.7237 3.3756 -1.1971 6 6 2.9542 4.0273 0.0001 7 6 3.4560 5.4483 0.0000 8 1 3.5768 5.7910 1.0277 9 6 4.8038 5.5133 -0.7210 10 6 2.4480 6.3451 -0.7214 11 6 2.8881 7.7825 -0.6151 12 8 3.9080 8.0620 -0.0211 13 7 2.1491 8.7572 -1.1808 14 6 2.5774 10.1545 -1.0779 15 1 3.5767 10.3106 -0.6716 16 6 1.5088 11.1965 -0.7414 17 1 0.4912 10.8719 -0.5237 18 6 1.9729 12.5618 -0.1885 19 7 2.2296 13.3839 -1.3938 20 6 1.9427 14.7094 -1.5833 21 1 1.9478 15.1260 -2.5797 22 6 1.6452 15.5177 -0.4947 23 7 1.8119 15.0615 0.7287 24 14 1.0082 17.2526 -0.7658 25 1 -0.4749 17.2296 -0.8385 26 1 1.4351 18.1186 0.3623 27 1 1.5578 17.7887 -2.0369 28 6 2.8672 12.4468 -2.3478 29 6 2.0986 11.1205 -2.1635 30 1 1.5431 10.7354 -3.0186 31 6 2.7239 3.3757 1.1971 32 6 2.2626 2.0725 1.1972 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 -0.3634 -1.0277 -0.0005 36 1 1.8933 -0.5138 0.8900 37 1 1.8933 -0.5138 -0.8900 38 1 2.0926 1.5598 -2.1324 39 1 2.9034 3.8849 -2.1325 40 1 4.6830 5.1705 -1.7486 41 1 5.1670 6.5410 -0.7206 42 1 5.5220 4.8743 -0.2070 43 1 2.3933 6.0586 -1.7717 44 1 1.4661 6.2309 -0.2621 45 1 1.3337 8.5337 -1.6562 46 1 2.8868 12.4458 0.3942 47 1 1.1884 13.0128 0.4191 48 1 1.6044 15.6264 1.4894 49 1 3.9206 12.3129 -2.1024 50 1 2.7572 12.8109 -3.3693 51 1 2.9035 3.8849 2.1325 52 1 2.0823 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114836041.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:19 Heat of formation + Delta-G solvation = 9.544073 kcal Electronic energy + Delta-G solvation = -28476.925791 eV Core-core repulsion = 24634.374836 eV Total energy + Delta-G solvation = -3842.550955 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.31752 -40.54201 -39.76484 -36.74019 -36.00469 -34.34155 -33.87210 -32.17296 -31.76422 -29.74273 -28.95281 -28.78293 -27.43794 -25.22019 -23.76464 -23.65507 -22.60139 -21.92476 -21.48852 -20.89637 -20.55361 -18.87864 -18.23654 -17.63430 -16.91559 -16.79867 -16.58076 -16.20179 -15.89226 -15.65307 -15.24250 -14.89448 -14.79200 -14.65966 -14.60479 -14.40180 -14.08650 -13.93863 -13.84898 -13.69971 -13.35563 -13.30411 -13.03548 -12.88604 -12.71203 -12.63941 -12.34538 -12.27724 -12.12325 -12.05136 -12.01925 -11.87370 -11.79359 -11.64678 -11.56296 -11.47120 -10.88564 -10.79500 -10.66934 -9.75636 -9.66723 -9.35731 -8.93804 -7.92518 -5.30012 0.46485 0.56674 1.46407 1.48514 1.57649 1.59923 2.01831 2.48203 2.86122 2.88650 3.27875 3.55528 3.65254 3.78225 3.84923 3.93635 3.94355 4.05110 4.12141 4.15213 4.20158 4.21705 4.38480 4.39035 4.50215 4.53486 4.55509 4.64049 4.68682 4.70597 4.75687 4.82943 4.86770 4.90118 4.98531 5.06918 5.10332 5.12457 5.21020 5.22347 5.27798 5.31193 5.38330 5.41589 5.42657 5.46495 5.57740 5.61873 5.63286 5.79377 5.81187 6.15416 6.18406 6.58164 6.98774 7.29960 7.66207 8.44639 9.21419 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.027944 B = 0.001604 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.758247 B =17450.897440 C =17628.294066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.123 4.123 5 C -0.114 4.114 6 C -0.085 4.085 7 C -0.031 4.031 8 H 0.066 0.934 9 C -0.145 4.145 10 C -0.120 4.120 11 C 0.512 3.488 12 O -0.578 6.578 13 N -0.686 5.686 14 C 0.118 3.882 15 H 0.102 0.898 16 C -0.186 4.186 17 H 0.121 0.879 18 C 0.190 3.810 19 N -0.617 5.617 20 C -0.242 4.242 21 H 0.085 0.915 22 C -0.064 4.064 23 N -0.950 5.950 24 Si 0.983 3.017 25 H -0.283 1.283 26 H -0.296 1.296 27 H -0.266 1.266 28 C 0.147 3.853 29 C -0.159 4.159 30 H 0.142 0.858 31 C -0.126 4.126 32 C -0.126 4.126 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.123 0.877 44 H 0.113 0.887 45 H 0.418 0.582 46 H -0.008 1.008 47 H 0.056 0.944 48 H 0.250 0.750 49 H 0.018 0.982 50 H 0.066 0.934 51 H 0.121 0.879 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.972 -32.879 -5.507 33.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.141 4.141 5 C -0.132 4.132 6 C -0.086 4.086 7 C -0.050 4.050 8 H 0.085 0.915 9 C -0.202 4.202 10 C -0.160 4.160 11 C 0.301 3.699 12 O -0.457 6.457 13 N -0.336 5.336 14 C 0.010 3.990 15 H 0.120 0.880 16 C -0.208 4.208 17 H 0.139 0.861 18 C 0.063 3.937 19 N -0.341 5.341 20 C -0.370 4.370 21 H 0.103 0.897 22 C -0.258 4.258 23 N -0.597 5.597 24 Si 0.811 3.189 25 H -0.210 1.210 26 H -0.222 1.222 27 H -0.190 1.190 28 C 0.021 3.979 29 C -0.180 4.180 30 H 0.159 0.841 31 C -0.144 4.144 32 C -0.144 4.144 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.141 0.859 44 H 0.131 0.869 45 H 0.256 0.744 46 H 0.010 0.990 47 H 0.075 0.925 48 H 0.059 0.941 49 H 0.036 0.964 50 H 0.085 0.915 51 H 0.140 0.860 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.293 -32.462 -4.999 32.924 hybrid contribution -0.393 1.359 0.374 1.463 sum -2.686 -31.103 -4.625 31.559 Atomic orbital electron populations 1.21733 0.94390 1.02259 1.01855 1.20575 0.96397 0.91730 1.03435 1.20165 0.98908 0.97134 0.93156 1.21264 0.99739 0.94886 0.98211 1.21174 0.99206 0.94966 0.97848 1.19801 0.99784 0.95225 0.93743 1.19766 0.94585 0.90430 1.00228 0.91540 1.21901 0.95918 1.02074 1.00317 1.21763 1.01235 0.87998 1.04989 1.21352 0.82883 0.88647 0.76988 1.90688 1.26734 1.84611 1.43653 1.45254 1.28012 1.04084 1.56238 1.21337 0.97027 0.79075 1.01513 0.87976 1.24382 0.99380 0.96897 1.00119 0.86106 1.20763 0.96815 0.86972 0.89104 1.45491 1.68966 1.06351 1.13340 1.19429 1.40257 0.84010 0.93327 0.89748 1.25799 1.02645 1.02367 0.94962 1.70117 1.54030 1.37750 0.97838 0.85011 0.77973 0.78755 0.77170 1.21011 1.22236 1.19009 1.21286 0.93857 0.88336 0.94379 1.24173 1.03874 0.96758 0.93187 0.84054 1.21235 0.99950 0.95367 0.97893 1.21200 1.00055 0.94754 0.98370 0.93145 0.92776 0.91379 0.90663 0.90260 0.84560 0.84608 0.91470 0.92749 0.93042 0.85896 0.86894 0.74438 0.98974 0.92537 0.94131 0.96428 0.91531 0.86050 0.85211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 71.98 0.71 -0.52 16 2 C -0.08 -0.77 6.07 29.85 0.18 -0.59 16 3 C -0.09 -1.23 5.13 -19.87 -0.10 -1.34 16 4 C -0.12 -1.57 9.70 22.27 0.22 -1.35 16 5 C -0.11 -1.55 8.76 22.27 0.20 -1.36 16 6 C -0.09 -1.39 4.78 -19.87 -0.09 -1.49 16 7 C -0.03 -0.57 2.21 -11.54 -0.03 -0.60 16 8 H 0.07 1.50 7.69 -2.38 -0.02 1.48 16 9 C -0.14 -2.88 8.75 71.98 0.63 -2.25 16 10 C -0.12 -1.89 4.91 29.85 0.15 -1.75 16 11 C 0.51 12.71 7.55 87.66 0.66 13.37 16 12 O -0.58 -19.86 13.53 -3.05 -0.04 -19.90 16 13 N -0.69 -16.05 5.56 -442.53 -2.46 -18.51 16 14 C 0.12 3.84 5.98 44.99 0.27 4.10 16 15 H 0.10 4.02 7.40 -2.39 -0.02 4.00 16 16 C -0.19 -6.99 7.05 -9.92 -0.07 -7.06 16 17 H 0.12 4.06 8.14 -2.39 -0.02 4.04 16 18 C 0.19 9.63 5.70 86.55 0.49 10.12 16 19 N -0.62 -32.41 3.38 -688.08 -2.32 -34.74 16 20 C -0.24 -13.65 10.35 84.03 0.87 -12.78 16 21 H 0.08 4.51 7.84 -2.91 -0.02 4.49 16 22 C -0.06 -3.68 5.40 84.86 0.46 -3.23 16 23 N -0.95 -58.20 10.86 21.65 0.24 -57.96 16 24 Si 0.98 45.72 29.56 68.60 2.03 47.75 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 26 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 C 0.15 6.12 7.04 86.53 0.61 6.73 16 29 C -0.16 -5.24 7.05 -9.93 -0.07 -5.31 16 30 H 0.14 3.65 8.14 -2.38 -0.02 3.63 16 31 C -0.13 -2.10 9.67 22.27 0.22 -1.89 16 32 C -0.13 -1.84 9.70 22.27 0.22 -1.63 16 33 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.07 0.61 8.09 -2.39 -0.02 0.59 16 37 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 38 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 39 H 0.14 1.38 7.16 -2.91 -0.02 1.36 16 40 H 0.07 1.07 7.39 -2.39 -0.02 1.05 16 41 H 0.05 1.40 5.95 -2.39 -0.01 1.38 16 42 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.12 1.27 7.57 -2.39 -0.02 1.25 16 44 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.42 6.61 8.83 -92.71 -0.82 5.80 16 46 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 47 H 0.06 3.22 6.51 -2.39 -0.02 3.21 16 48 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 49 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 51 H 0.12 1.91 7.95 -2.91 -0.02 1.89 16 52 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -73.42 416.24 3.03 -70.39 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.08 Total: 21.78 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 5.51 Total: -8.80 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -4.55 Total: -111.21 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.04 Total: -19.90 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -73.42 3.03 -70.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114836041.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.931 kcal (2) G-P(sol) polarization free energy of solvation -73.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds