Wall clock time and date at job start Wed Apr 1 2020 03:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47489 * 2 1 4 4 C 1.38253 * 120.00369 * 265.25172 * 3 2 1 5 5 C 1.38214 * 120.00373 * 180.27122 * 4 3 2 6 6 C 1.38258 * 119.99907 * 359.74870 * 5 4 3 7 7 C 1.38215 * 119.99971 * 359.97438 * 6 5 4 8 8 C 1.38221 * 119.99823 * 84.99329 * 3 2 1 9 9 C 1.50692 * 120.00100 * 0.02562 * 8 3 2 10 10 C 1.50695 * 109.47437 * 84.72415 * 9 8 3 11 11 O 1.21284 * 120.00084 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00067 * 179.97438 * 10 9 8 13 13 C 1.46494 * 119.99734 * 179.97438 * 12 10 9 14 14 C 1.53010 * 109.46950 * 179.97438 * 13 12 10 15 15 C 1.50697 * 109.46904 * 179.97438 * 14 13 12 16 16 C 1.29458 * 117.69367 * 95.00454 * 15 14 13 17 17 C 1.50320 * 123.65602 * 181.13583 * 16 15 14 18 18 N 1.47115 * 109.10396 * 348.53877 * 17 16 15 19 19 C 1.36936 * 121.51016 * 223.16054 * 18 17 16 20 20 H 1.08000 * 120.00184 * 156.31047 * 19 18 17 21 21 C 1.38809 * 120.00164 * 336.30464 * 19 18 17 22 22 N 1.31619 * 119.99792 * 344.28579 * 21 19 18 23 23 Si 1.86798 * 120.00198 * 164.29147 * 21 19 18 24 24 H 1.48497 * 109.47521 * 94.57233 * 23 21 19 25 25 H 1.48499 * 109.47129 * 214.57944 * 23 21 19 26 26 H 1.48502 * 109.46919 * 334.57033 * 23 21 19 27 27 C 1.47343 * 117.11206 * 43.34374 * 18 17 16 28 28 C 1.49968 * 117.69700 * 274.97856 * 15 14 13 29 29 H 1.09002 * 109.46841 * 59.99744 * 1 2 3 30 30 H 1.08993 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47441 * 300.00372 * 1 2 3 32 32 H 1.08995 * 109.47441 * 239.99628 * 2 1 3 33 33 H 1.09000 * 109.46858 * 119.99708 * 2 1 3 34 34 H 1.08002 * 119.99636 * 0.04335 * 4 3 2 35 35 H 1.07998 * 120.00142 * 179.76827 * 5 4 3 36 36 H 1.08001 * 120.00182 * 179.97438 * 6 5 4 37 37 H 1.08002 * 120.00215 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.47119 * 324.71890 * 9 8 3 39 39 H 1.09006 * 109.47011 * 204.72607 * 9 8 3 40 40 H 0.97001 * 120.00019 * 359.97438 * 12 10 9 41 41 H 1.09000 * 109.47114 * 60.00827 * 13 12 10 42 42 H 1.09002 * 109.47818 * 299.99862 * 13 12 10 43 43 H 1.09000 * 109.46517 * 60.00485 * 14 13 12 44 44 H 1.08993 * 109.46999 * 300.00593 * 14 13 12 45 45 H 1.08005 * 118.16972 * 0.85690 * 16 15 14 46 46 H 1.08992 * 109.52154 * 108.64475 * 17 16 15 47 47 H 1.08998 * 109.52435 * 228.83966 * 17 16 15 48 48 H 0.97006 * 119.99832 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.77544 * 178.42646 * 27 18 17 50 50 H 1.09000 * 109.77364 * 57.62619 * 27 18 17 51 51 H 1.09002 * 109.31403 * 281.29267 * 28 15 14 52 52 H 1.08995 * 109.31485 * 40.72303 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3563 2.0395 -1.1932 5 6 2.8224 3.3407 -1.1927 6 6 2.9598 4.0253 0.0006 7 6 2.6306 3.4087 1.1930 8 6 2.1643 2.1071 1.1925 9 6 1.8062 1.4345 2.4926 10 6 2.9835 0.6323 2.9841 11 8 4.0119 0.6087 2.3416 12 7 2.8935 -0.0589 4.1377 13 6 4.0378 -0.8391 4.6152 14 6 3.6747 -1.5209 5.9360 15 6 4.8515 -2.3240 6.4268 16 6 5.6500 -1.7630 7.2775 17 6 6.8760 -2.4307 7.8349 18 7 6.8488 -3.8588 7.4826 19 6 7.1819 -4.8268 8.3920 20 1 6.8081 -5.8328 8.2712 21 6 8.0000 -4.5151 9.4692 22 7 8.7018 -3.4016 9.4620 23 14 8.1051 -5.6759 10.9289 24 1 9.2652 -6.5864 10.7549 25 1 8.2765 -4.8885 12.1762 26 1 6.8568 -6.4756 11.0162 27 6 6.4513 -4.2034 6.1063 28 6 5.0149 -3.7170 5.8959 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2486 1.5048 -2.1253 35 1 3.0790 3.8227 -2.1244 36 1 3.3244 5.0419 0.0010 37 1 2.7375 3.9436 2.1251 38 1 0.9549 0.7721 2.3365 39 1 1.5470 2.1908 3.2336 40 1 2.0711 -0.0397 4.6517 41 1 4.8895 -0.1769 4.7708 42 1 4.2963 -1.5958 3.8744 43 1 2.8228 -2.1830 5.7808 44 1 3.4164 -0.7640 6.6765 45 1 5.4251 -0.7575 7.6013 46 1 7.7673 -1.9652 7.4144 47 1 6.8864 -2.3259 8.9198 48 1 9.2738 -3.1840 10.2146 49 1 6.4990 -5.2835 5.9681 50 1 7.1153 -3.7104 5.3963 51 1 4.3284 -4.3843 6.4171 52 1 4.7834 -3.7264 4.8309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160462157.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:37 Heat of formation + Delta-G solvation = 6.913862 kcal Electronic energy + Delta-G solvation = -28848.337644 eV Core-core repulsion = 25005.672634 eV Total energy + Delta-G solvation = -3842.665010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.47640 -39.08577 -37.86223 -35.41673 -34.57725 -33.55853 -32.83028 -31.37414 -29.91780 -29.75362 -28.99434 -27.55775 -25.22918 -24.12450 -23.13171 -22.58218 -22.14858 -21.08141 -20.91919 -20.20993 -17.61644 -17.22262 -16.78638 -16.42618 -16.11049 -15.67361 -15.32864 -15.18254 -14.91742 -14.21280 -14.08536 -14.02556 -13.94492 -13.72446 -13.55205 -13.36459 -13.31445 -13.13667 -12.66072 -12.41858 -12.27519 -12.10967 -12.05645 -11.97982 -11.59026 -11.53890 -11.39969 -11.08394 -10.98018 -10.94896 -10.90188 -10.71062 -10.31876 -10.26501 -9.98978 -9.79598 -9.53375 -9.12247 -8.99909 -8.79594 -8.64098 -7.90893 -6.71347 -5.77330 -3.15550 1.11596 1.20414 2.54125 2.83687 3.17082 3.38481 3.45326 3.47711 3.61749 4.33382 4.48016 4.50944 4.62896 4.69108 4.75976 4.89086 4.94467 5.05221 5.09195 5.12201 5.21251 5.23694 5.29675 5.30651 5.37717 5.41320 5.57268 5.60574 5.62610 5.65892 5.76628 5.80956 5.86508 5.95628 6.02282 6.06719 6.16733 6.22692 6.26002 6.30264 6.37166 6.41586 6.43176 6.57139 6.80073 6.80640 6.92223 7.24745 7.33241 7.38572 7.43440 7.76471 7.89810 8.13570 8.40513 9.21932 9.85008 10.44034 11.33143 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025161 B = 0.001751 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.584168 B =15985.016464 C =16368.014673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.063 4.063 4 C -0.119 4.119 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.105 4.105 8 C -0.063 4.063 9 C -0.107 4.107 10 C 0.510 3.490 11 O -0.528 6.528 12 N -0.732 5.732 13 C 0.125 3.875 14 C -0.091 4.091 15 C -0.143 4.143 16 C -0.146 4.146 17 C 0.196 3.804 18 N -0.595 5.595 19 C -0.244 4.244 20 H 0.068 0.932 21 C -0.003 4.003 22 N -0.909 5.909 23 Si 0.904 3.096 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.142 3.858 28 C -0.091 4.091 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.398 0.602 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.038 0.962 47 H 0.091 0.909 48 H 0.253 0.747 49 H 0.056 0.944 50 H 0.023 0.977 51 H 0.062 0.938 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.479 13.062 -17.981 29.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.063 4.063 4 C -0.137 4.137 5 C -0.136 4.136 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.064 4.064 9 C -0.147 4.147 10 C 0.296 3.704 11 O -0.403 6.403 12 N -0.385 5.385 13 C 0.002 3.998 14 C -0.129 4.129 15 C -0.143 4.143 16 C -0.166 4.166 17 C 0.071 3.929 18 N -0.319 5.319 19 C -0.373 4.373 20 H 0.086 0.914 21 C -0.201 4.201 22 N -0.555 5.555 23 Si 0.734 3.266 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.016 3.984 28 C -0.130 4.130 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.232 0.768 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.056 0.944 47 H 0.109 0.891 48 H 0.063 0.937 49 H 0.074 0.926 50 H 0.041 0.959 51 H 0.080 0.920 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.593 13.070 -18.300 29.179 hybrid contribution -0.215 -0.374 1.124 1.204 sum -18.807 12.696 -17.176 28.459 Atomic orbital electron populations 1.21774 0.94668 1.01870 1.02123 1.20573 0.95938 0.92882 1.03260 1.19665 0.98351 0.95658 0.92634 1.20981 1.00155 0.95214 0.97344 1.21110 0.99604 0.94842 0.98045 1.21068 1.00682 1.00002 0.92543 1.20977 0.98581 0.94498 0.98206 1.19095 1.00184 0.94025 0.93049 1.20757 0.97706 1.00108 0.96125 1.20488 0.89438 0.79717 0.80772 1.90757 1.31029 1.62554 1.55999 1.46133 1.17589 1.50498 1.24245 1.21427 0.88141 0.94557 0.95710 1.20904 0.98045 0.98435 0.95492 1.20225 0.96942 0.96296 1.00877 1.23118 0.98087 0.98668 0.96717 1.19723 0.90181 0.82876 1.00131 1.44170 1.78916 1.02195 1.06585 1.19179 1.23361 0.91780 1.03007 0.91396 1.24989 0.96765 0.97892 1.00441 1.70024 1.28927 1.25542 1.30992 0.86246 0.77770 0.80073 0.82507 1.21522 1.21604 1.20519 1.20957 0.91829 0.98012 0.87630 1.20753 1.00357 0.93537 0.98326 0.92455 0.92214 0.92554 0.90905 0.91013 0.86210 0.86226 0.86166 0.86242 0.87817 0.88097 0.76795 0.91378 0.91351 0.91504 0.91571 0.89102 0.94427 0.89120 0.93662 0.92558 0.95884 0.91958 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.72 37.16 0.36 -0.57 16 2 C -0.09 -0.76 5.38 -27.89 -0.15 -0.91 16 3 C -0.06 -0.62 5.13 -104.62 -0.54 -1.16 16 4 C -0.12 -1.11 9.68 -39.58 -0.38 -1.49 16 5 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 6 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 7 C -0.10 -1.02 9.68 -39.58 -0.38 -1.40 16 8 C -0.06 -0.63 4.37 -104.62 -0.46 -1.09 16 9 C -0.11 -0.87 5.16 -29.04 -0.15 -1.02 16 10 C 0.51 5.92 7.01 -10.98 -0.08 5.85 16 11 O -0.53 -8.63 16.03 5.55 0.09 -8.54 16 12 N -0.73 -7.39 5.56 -60.29 -0.33 -7.73 16 13 C 0.12 1.60 5.66 -4.04 -0.02 1.58 16 14 C -0.09 -1.16 5.32 -27.88 -0.15 -1.31 16 15 C -0.14 -2.46 5.11 -100.99 -0.52 -2.97 16 16 C -0.15 -2.85 9.47 -35.78 -0.34 -3.19 16 17 C 0.20 4.76 5.25 -5.04 -0.03 4.73 16 18 N -0.60 -15.21 3.01 -173.59 -0.52 -15.73 16 19 C -0.24 -6.76 9.71 -15.06 -0.15 -6.91 16 20 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 21 C 0.00 -0.09 5.01 -17.43 -0.09 -0.18 16 22 N -0.91 -26.55 11.07 55.49 0.61 -25.93 16 23 Si 0.90 21.84 29.58 -169.99 -5.03 16.81 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.14 3.04 6.57 -3.53 -0.02 3.02 16 28 C -0.09 -1.61 5.95 -28.18 -0.17 -1.78 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.33 6.80 -51.93 -0.35 -0.03 16 32 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 33 H 0.07 0.69 6.40 -51.93 -0.33 0.36 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.10 0.64 5.64 -51.93 -0.29 0.35 16 39 H 0.10 0.59 8.05 -51.93 -0.42 0.17 16 40 H 0.40 2.73 8.47 -40.82 -0.35 2.39 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 43 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 44 H 0.07 0.78 7.78 -51.93 -0.40 0.38 16 45 H 0.09 1.57 7.73 -52.48 -0.41 1.16 16 46 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.09 2.43 6.39 -51.93 -0.33 2.10 16 48 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 50 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 LS Contribution 415.69 15.07 6.26 6.26 Total: -1.00 -33.46 415.69 -11.72 -45.18 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.75 Total: 1.44 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -4.05 Total: -11.76 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.24 Total: -49.40 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.46 -11.72 -45.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160462157.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.092 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds