Wall clock time and date at job start Wed Apr 1 2020 03:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47191 * 2 1 4 4 C 1.38257 * 120.00006 * 270.02198 * 3 2 1 5 5 C 1.38208 * 119.99958 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.00117 * 359.81632 * 5 4 3 7 7 C 1.38210 * 119.99481 * 0.41322 * 6 5 4 8 8 C 1.50700 * 119.99658 * 179.81344 * 7 6 5 9 9 C 1.50702 * 109.47334 * 269.72609 * 8 7 6 10 10 O 1.21277 * 119.99947 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00278 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00238 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47047 * 180.02562 * 12 11 9 14 14 C 1.50712 * 109.46805 * 180.02562 * 13 12 11 15 15 C 1.29454 * 117.69203 * 95.00070 * 14 13 12 16 16 C 1.50323 * 123.64590 * 181.13493 * 15 14 13 17 17 N 1.47102 * 109.11127 * 348.54347 * 16 15 14 18 18 C 1.36940 * 121.51360 * 223.15765 * 17 16 15 19 19 H 1.08004 * 119.99962 * 156.19051 * 18 17 16 20 20 C 1.38811 * 119.99874 * 336.18990 * 18 17 16 21 21 N 1.31620 * 119.99972 * 344.47015 * 20 18 17 22 22 Si 1.86793 * 120.00126 * 164.47761 * 20 18 17 23 23 H 1.48510 * 109.47011 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47588 * 119.99663 * 22 20 18 25 25 H 1.48502 * 109.47132 * 240.00287 * 22 20 18 26 26 C 1.47346 * 117.11188 * 43.34401 * 17 16 15 27 27 C 1.49973 * 117.69226 * 274.98109 * 14 13 12 28 28 C 1.38213 * 120.00044 * 90.00166 * 3 2 1 29 29 H 1.09002 * 109.47166 * 300.00228 * 1 2 3 30 30 H 1.09001 * 109.46905 * 59.99451 * 1 2 3 31 31 H 1.09001 * 109.47207 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47166 * 239.99771 * 2 1 3 33 33 H 1.09004 * 109.47099 * 119.99810 * 2 1 3 34 34 H 1.08002 * 119.99811 * 359.97438 * 4 3 2 35 35 H 1.07999 * 120.00170 * 180.02562 * 5 4 3 36 36 H 1.07995 * 119.99976 * 180.23318 * 6 5 4 37 37 H 1.08997 * 109.47491 * 149.72732 * 8 7 6 38 38 H 1.08999 * 109.47596 * 29.73090 * 8 7 6 39 39 H 0.97000 * 120.00115 * 0.02562 * 11 9 8 40 40 H 1.09003 * 109.46936 * 60.00791 * 12 11 9 41 41 H 1.08994 * 109.47266 * 300.01104 * 12 11 9 42 42 H 1.08996 * 109.47166 * 60.01196 * 13 12 11 43 43 H 1.08994 * 109.47540 * 300.00387 * 13 12 11 44 44 H 1.07997 * 118.17373 * 0.86395 * 15 14 13 45 45 H 1.09007 * 109.51511 * 108.65398 * 16 15 14 46 46 H 1.08999 * 109.52217 * 228.83518 * 16 15 14 47 47 H 0.97000 * 119.99856 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.77792 * 178.43066 * 26 17 16 49 49 H 1.08997 * 109.77697 * 57.62702 * 26 17 16 50 50 H 1.09000 * 109.31396 * 281.28816 * 27 14 13 51 51 H 1.08999 * 109.31466 * 40.71906 * 27 14 13 52 52 H 1.08002 * 119.99913 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2624 2.0728 -1.1973 5 6 2.7226 3.3760 -1.1973 6 6 2.9493 4.0291 0.0000 7 6 2.7239 3.3757 1.1969 8 6 2.9751 4.0861 2.5020 9 6 4.3982 3.8489 2.9374 10 8 5.1360 3.1702 2.2548 11 7 4.8513 4.3918 4.0847 12 6 6.2346 4.1607 4.5082 13 6 6.4896 4.8821 5.8332 14 6 7.9128 4.6448 6.2685 15 6 8.7953 5.5378 5.9528 16 6 10.2543 5.4250 6.2967 17 7 10.4399 4.3222 7.2524 18 6 11.2641 4.4477 8.3388 19 1 11.1102 3.8254 9.2080 20 6 12.2972 5.3746 8.3229 21 7 12.6828 5.9108 7.1843 22 14 13.1404 5.8609 9.9171 23 1 12.5250 5.1211 11.0482 24 1 14.5852 5.5277 9.8347 25 1 12.9808 7.3210 10.1361 26 6 9.7036 3.0736 6.9882 27 6 8.2067 3.3911 7.0372 28 6 2.2628 2.0724 1.1970 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0824 1.5636 -2.1327 35 1 2.9018 3.8854 -2.1326 36 1 3.3053 5.0486 0.0000 37 1 2.2940 3.7023 3.2616 38 1 2.8084 5.1554 2.3717 39 1 4.2614 4.9349 4.6305 40 1 6.9160 4.5439 3.7486 41 1 6.4007 3.0915 4.6391 42 1 5.8084 4.4985 6.5926 43 1 6.3234 5.9513 5.7026 44 1 8.4656 6.4103 5.4084 45 1 10.8277 5.2272 5.3910 46 1 10.5951 6.3565 6.7485 47 1 13.4045 6.5588 7.1733 48 1 9.9486 2.3328 7.7493 49 1 9.9675 2.6914 6.0021 50 1 7.9002 3.5241 8.0747 51 1 7.6479 2.5623 6.6025 52 1 2.0824 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160515193.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:43 Heat of formation + Delta-G solvation = 4.176043 kcal Electronic energy + Delta-G solvation = -28262.932228 eV Core-core repulsion = 24420.148497 eV Total energy + Delta-G solvation = -3842.783731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -40.28535 -39.17161 -37.87496 -35.45636 -34.68797 -33.55826 -32.69229 -31.37347 -29.93326 -29.76595 -28.99485 -27.54958 -25.21086 -24.23507 -23.14144 -22.58604 -22.19444 -21.12920 -20.91380 -20.07674 -17.61552 -17.20195 -16.80185 -16.22488 -16.14674 -15.67412 -15.42510 -15.11226 -14.98183 -14.32650 -14.09848 -14.06432 -13.85850 -13.80824 -13.55267 -13.39512 -13.28093 -13.16975 -12.66472 -12.38355 -12.29905 -12.11557 -12.02171 -11.97862 -11.59418 -11.53868 -11.39651 -11.13634 -11.04215 -10.98291 -10.90458 -10.73257 -10.29142 -10.25991 -9.98901 -9.79567 -9.52926 -9.12125 -8.99220 -8.82029 -8.64558 -7.90879 -6.71334 -5.77314 -3.15880 1.11136 1.19928 2.54654 2.83681 3.16613 3.38313 3.45763 3.48031 3.61584 4.32293 4.42280 4.50898 4.58458 4.73881 4.81959 4.86770 4.95505 5.02166 5.12227 5.14018 5.16304 5.21956 5.28153 5.29705 5.36616 5.41303 5.55903 5.56900 5.57522 5.66050 5.77585 5.81105 5.85309 5.89921 6.02424 6.06855 6.16877 6.22874 6.24758 6.33787 6.37407 6.39752 6.41786 6.57241 6.79580 6.80781 6.92351 7.24849 7.33383 7.38773 7.43536 7.76832 7.89920 8.13759 8.40530 9.22006 9.84937 10.43977 11.33113 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.027003 B = 0.001579 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.674851 B =17726.433494 C =17979.226834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.062 4.062 8 C -0.103 4.103 9 C 0.510 3.490 10 O -0.529 6.529 11 N -0.732 5.732 12 C 0.124 3.876 13 C -0.091 4.091 14 C -0.143 4.143 15 C -0.146 4.146 16 C 0.196 3.804 17 N -0.595 5.595 18 C -0.244 4.244 19 H 0.069 0.931 20 C -0.003 4.003 21 N -0.909 5.909 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.142 3.858 27 C -0.091 4.091 28 C -0.103 4.103 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.399 0.601 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.038 0.962 46 H 0.091 0.909 47 H 0.253 0.747 48 H 0.056 0.944 49 H 0.023 0.977 50 H 0.062 0.938 51 H 0.052 0.948 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.111 -4.797 -13.359 30.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.128 4.128 7 C -0.062 4.062 8 C -0.143 4.143 9 C 0.295 3.705 10 O -0.405 6.405 11 N -0.384 5.384 12 C 0.001 3.999 13 C -0.129 4.129 14 C -0.144 4.144 15 C -0.166 4.166 16 C 0.071 3.929 17 N -0.319 5.319 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.200 4.200 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.016 3.984 27 C -0.130 4.130 28 C -0.121 4.121 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.232 0.768 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.056 0.944 46 H 0.109 0.891 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.041 0.959 50 H 0.080 0.920 51 H 0.071 0.929 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -26.407 -5.187 -13.852 30.268 hybrid contribution 0.260 0.765 1.022 1.303 sum -26.148 -4.422 -12.830 29.459 Atomic orbital electron populations 1.21744 0.94743 1.01668 1.02137 1.20549 0.96091 0.92713 1.02980 1.19832 0.99138 0.96112 0.93083 1.20998 1.00336 0.95003 0.97419 1.21070 0.99476 0.94969 0.97869 1.20959 0.99803 1.00024 0.92023 1.19230 0.98992 0.94394 0.93584 1.20690 0.94736 1.02534 0.96350 1.20512 0.89400 0.79714 0.80844 1.90754 1.58131 1.38155 1.53442 1.46127 1.14401 1.53753 1.24157 1.21426 0.81272 1.00993 0.96166 1.20903 0.96577 1.00022 0.95364 1.20234 0.92973 0.98389 1.02797 1.23115 0.98644 0.96945 0.97854 1.19725 0.86960 0.93527 0.92711 1.44170 1.51332 1.08329 1.28022 1.19234 1.06216 1.19655 0.92229 0.91330 1.24989 0.96751 1.01563 0.96730 1.70030 1.29750 1.32267 1.23441 0.86186 0.79056 0.78148 0.83189 1.20329 1.21764 1.21640 1.20958 0.89569 0.89705 0.98204 1.20754 0.99413 0.94184 0.98626 1.20821 0.99726 0.93905 0.97612 0.92573 0.92619 0.92423 0.91032 0.90987 0.86314 0.86098 0.86308 0.88017 0.87961 0.76773 0.91363 0.91361 0.91504 0.91573 0.89102 0.94423 0.89120 0.93699 0.92552 0.95872 0.91958 0.92918 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.16 0.37 -0.48 16 2 C -0.09 -0.61 6.06 -27.88 -0.17 -0.78 16 3 C -0.08 -0.75 5.13 -104.62 -0.54 -1.29 16 4 C -0.12 -1.07 9.70 -39.59 -0.38 -1.45 16 5 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 6 C -0.11 -1.07 9.70 -39.58 -0.38 -1.46 16 7 C -0.06 -0.61 4.37 -104.63 -0.46 -1.07 16 8 C -0.10 -0.81 5.83 -29.03 -0.17 -0.98 16 9 C 0.51 5.94 7.82 -10.98 -0.09 5.85 16 10 O -0.53 -8.75 16.03 5.56 0.09 -8.66 16 11 N -0.73 -7.42 5.56 -60.30 -0.33 -7.76 16 12 C 0.12 1.61 5.66 -4.04 -0.02 1.59 16 13 C -0.09 -1.16 5.32 -27.88 -0.15 -1.31 16 14 C -0.14 -2.47 5.11 -100.98 -0.52 -2.99 16 15 C -0.15 -2.84 9.47 -35.78 -0.34 -3.18 16 16 C 0.20 4.76 5.25 -5.05 -0.03 4.73 16 17 N -0.60 -15.21 3.01 -173.59 -0.52 -15.73 16 18 C -0.24 -6.77 9.71 -15.06 -0.15 -6.92 16 19 H 0.07 1.86 7.88 -52.48 -0.41 1.45 16 20 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 21 N -0.91 -26.55 11.07 55.49 0.61 -25.94 16 22 Si 0.90 21.85 29.58 -169.99 -5.03 16.82 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 C 0.14 3.04 6.57 -3.53 -0.02 3.02 16 27 C -0.09 -1.61 5.95 -28.18 -0.17 -1.78 16 28 C -0.10 -1.00 9.36 -39.59 -0.37 -1.37 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.10 0.56 8.09 -51.93 -0.42 0.14 16 38 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 39 H 0.40 2.73 8.47 -40.82 -0.35 2.38 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 43 H 0.07 0.78 7.78 -51.93 -0.40 0.38 16 44 H 0.09 1.57 7.73 -52.49 -0.41 1.16 16 45 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 46 H 0.09 2.44 6.40 -51.93 -0.33 2.10 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 51 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 52 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 422.93 15.07 6.37 6.37 Total: -1.00 -33.60 422.93 -11.91 -45.51 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -9.04 Total: 0.87 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -4.06 Total: -11.48 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.24 Total: -49.43 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.60 -11.91 -45.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160515193.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.687 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.91 seconds