Wall clock time and date at job start Wed Apr 1 2020 02:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 115.54676 * 2 1 4 4 C 1.38232 * 120.00077 * 57.31603 * 3 2 1 5 5 C 1.38237 * 119.99879 * 179.74452 * 4 3 2 6 6 C 1.38237 * 120.00225 * 0.54767 * 5 4 3 7 7 C 1.38237 * 119.99557 * 359.70330 * 6 5 4 8 8 C 1.38231 * 120.00102 * 0.02562 * 7 6 5 9 9 C 1.53001 * 117.50172 * 214.33547 * 2 1 3 10 10 C 1.52999 * 117.50278 * 145.70936 * 2 1 3 11 11 H 1.08998 * 117.49701 * 0.02562 * 10 2 1 12 12 C 1.50698 * 117.50033 * 214.98034 * 10 2 1 13 13 O 1.21285 * 120.00212 * 273.41325 * 12 10 2 14 14 N 1.34775 * 120.00222 * 93.40974 * 12 10 2 15 15 C 1.46496 * 120.00508 * 185.37031 * 14 12 10 16 16 C 1.53001 * 109.47615 * 175.02995 * 15 14 12 17 17 C 1.52999 * 109.47047 * 184.80781 * 16 15 14 18 18 C 1.53002 * 115.54905 * 274.28734 * 17 16 15 19 19 N 1.46498 * 109.47080 * 300.74556 * 18 17 16 20 20 C 1.36941 * 120.00065 * 183.79247 * 19 18 17 21 21 H 1.08001 * 119.99436 * 5.10196 * 20 19 18 22 22 C 1.38814 * 119.99997 * 185.09823 * 20 19 18 23 23 N 1.31614 * 120.00243 * 5.14115 * 22 20 19 24 24 Si 1.86799 * 119.99712 * 185.13850 * 22 20 19 25 25 H 1.48507 * 109.47156 * 59.99915 * 24 22 20 26 26 H 1.48495 * 109.47003 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47322 * 299.99941 * 24 22 20 28 28 C 1.52997 * 117.49563 * 128.58391 * 17 16 15 29 29 C 1.52993 * 117.50068 * 59.96062 * 17 16 15 30 30 H 1.08998 * 109.46893 * 154.27956 * 1 2 3 31 31 H 1.08992 * 109.47141 * 34.27634 * 1 2 3 32 32 H 1.08998 * 109.47001 * 274.27228 * 1 2 3 33 33 H 1.08004 * 120.00020 * 359.97438 * 4 3 2 34 34 H 1.08007 * 119.99677 * 180.27034 * 5 4 3 35 35 H 1.07998 * 120.00213 * 179.72431 * 6 5 4 36 36 H 1.08003 * 119.99222 * 179.97438 * 7 6 5 37 37 H 1.07999 * 119.99952 * 179.97438 * 8 7 6 38 38 H 1.09000 * 117.49693 * 359.97438 * 9 2 1 39 39 H 1.08993 * 117.50237 * 144.99590 * 9 2 1 40 40 H 0.97003 * 119.99681 * 5.37106 * 14 12 10 41 41 H 1.09010 * 109.46821 * 295.02949 * 15 14 12 42 42 H 1.09004 * 109.47243 * 55.02297 * 15 14 12 43 43 H 1.08996 * 109.46696 * 304.80583 * 16 15 14 44 44 H 1.08999 * 109.47001 * 64.80521 * 16 15 14 45 45 H 1.08996 * 109.47174 * 60.74713 * 18 17 16 46 46 H 1.09002 * 109.47226 * 180.74597 * 18 17 16 47 47 H 0.96998 * 120.00207 * 3.79921 * 19 18 17 48 48 H 0.96998 * 119.99919 * 185.00505 * 23 22 20 49 49 H 1.08997 * 117.50236 * 359.97438 * 28 17 16 50 50 H 1.09002 * 117.49912 * 145.02104 * 28 17 16 51 51 H 1.09006 * 117.50159 * 214.97716 * 29 17 16 52 52 H 1.08999 * 117.50186 * 359.97438 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 6 1.8947 2.2620 1.0076 5 6 2.4949 3.5073 1.0104 6 6 3.3716 3.8544 -0.0005 7 6 3.6528 2.9538 -1.0109 8 6 3.0569 1.7066 -1.0107 9 6 2.2365 -1.1206 -0.7655 10 6 2.2366 -1.1212 0.7646 11 1 1.6114 -1.8591 1.2672 12 6 3.5294 -0.7815 1.4605 13 8 4.5781 -0.8405 0.8542 14 7 3.5202 -0.4122 2.7566 15 6 4.7590 0.0310 3.4009 16 6 4.4527 0.5069 4.8224 17 6 5.7232 1.0807 5.4529 18 6 6.6449 0.0610 6.1249 19 7 5.9144 -0.6298 7.1904 20 6 6.5608 -1.5372 7.9867 21 1 7.6260 -1.6833 7.8840 22 6 5.8471 -2.2691 8.9258 23 7 4.5362 -2.1659 8.9827 24 14 6.7472 -3.4004 10.1087 25 1 7.7023 -2.6065 10.9229 26 1 5.7650 -4.0634 11.0035 27 1 7.4898 -4.4311 9.3397 28 6 5.6337 2.4735 6.0797 29 6 6.3790 2.2757 4.7582 30 1 -0.3633 -0.9258 -0.4460 31 1 -0.3633 0.8491 -0.5787 32 1 -0.3633 0.0766 1.0248 33 1 1.2058 1.9928 1.7946 34 1 2.2754 4.2107 1.8001 35 1 3.8371 4.8289 -0.0006 36 1 4.3375 3.2252 -1.8008 37 1 3.2763 1.0032 -1.8003 38 1 1.6113 -1.8582 -1.2687 39 1 3.1714 -0.8745 -1.2689 40 1 2.6932 -0.4398 3.2629 41 1 5.4652 -0.7985 3.4396 42 1 5.1929 0.8511 2.8287 43 1 3.6832 1.2781 4.7894 44 1 4.0990 -0.3341 5.4187 45 1 6.9828 -0.6656 5.3860 46 1 7.5071 0.5750 6.5496 47 1 4.9729 -0.4445 7.3319 48 1 4.0440 -2.6201 9.6843 49 1 4.6699 2.9812 6.0425 50 1 6.2316 2.6636 6.9711 51 1 7.4672 2.3357 4.7802 52 1 5.9057 2.6529 3.8517 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166265297.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:19 Heat of formation + Delta-G solvation = 39.882135 kcal Electronic energy + Delta-G solvation = -29889.824342 eV Core-core repulsion = 26048.588944 eV Total energy + Delta-G solvation = -3841.235398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.64653 -39.07910 -38.26474 -36.97384 -34.69717 -33.90696 -31.17539 -30.88051 -30.77098 -30.00019 -28.80430 -26.04772 -24.78724 -23.38115 -22.94059 -22.69870 -22.34202 -21.60688 -20.40784 -19.67347 -18.50344 -17.58974 -17.06963 -16.55692 -15.86981 -15.69004 -15.18778 -15.04937 -14.96322 -14.59584 -14.43116 -14.28117 -13.83376 -13.61068 -13.46258 -13.21084 -13.16636 -12.96303 -12.84200 -12.64464 -12.43921 -12.34400 -11.96656 -11.81851 -11.39770 -11.32637 -11.27506 -11.07737 -10.95650 -10.78641 -10.67293 -10.50361 -10.31291 -10.15331 -9.92014 -9.76565 -9.65564 -9.27154 -9.06270 -8.90048 -8.83404 -8.79386 -6.89143 -5.74198 -3.03462 1.15622 1.26434 2.56968 3.15019 3.45612 3.46100 3.50004 3.50959 3.68251 4.08118 4.26542 4.40207 4.55374 4.62976 4.66729 4.83201 4.85403 4.95094 4.99567 5.08177 5.13762 5.19021 5.26240 5.31535 5.34495 5.40305 5.48728 5.50998 5.53832 5.57180 5.63615 5.73896 5.76000 5.79954 5.83263 5.87766 5.91888 5.94096 6.19055 6.22308 6.23888 6.32100 6.36437 6.43097 6.45326 6.46942 6.57129 6.62844 6.80084 6.83324 6.86128 7.60996 7.71723 8.32841 8.44880 9.55356 10.13682 10.49740 11.47490 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.002598 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.640917 B =10776.951695 C =11870.716243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 C -0.053 4.053 4 C -0.104 4.104 5 C -0.119 4.119 6 C -0.121 4.121 7 C -0.119 4.119 8 C -0.103 4.103 9 C -0.138 4.138 10 C -0.176 4.176 11 H 0.129 0.871 12 C 0.545 3.455 13 O -0.539 6.539 14 N -0.721 5.721 15 C 0.128 3.872 16 C -0.091 4.091 17 C -0.118 4.118 18 C 0.188 3.812 19 N -0.727 5.727 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.165 4.165 29 C -0.177 4.177 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.400 0.600 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.021 0.979 46 H 0.022 0.978 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.087 0.913 50 H 0.094 0.906 51 H 0.091 0.909 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.699 10.928 -21.173 25.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.068 4.068 3 C -0.053 4.053 4 C -0.122 4.122 5 C -0.137 4.137 6 C -0.139 4.139 7 C -0.137 4.137 8 C -0.121 4.121 9 C -0.175 4.175 10 C -0.197 4.197 11 H 0.147 0.853 12 C 0.330 3.670 13 O -0.416 6.416 14 N -0.371 5.371 15 C 0.004 3.996 16 C -0.129 4.129 17 C -0.118 4.118 18 C 0.061 3.939 19 N -0.371 5.371 20 C -0.368 4.368 21 H 0.086 0.914 22 C -0.209 4.209 23 N -0.582 5.582 24 Si 0.735 3.265 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.202 4.202 29 C -0.215 4.215 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.233 0.767 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.218 0.782 48 H 0.064 0.936 49 H 0.106 0.894 50 H 0.113 0.887 51 H 0.110 0.890 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.809 10.729 -21.573 25.653 hybrid contribution -0.155 -0.631 1.215 1.377 sum -8.964 10.099 -20.358 24.429 Atomic orbital electron populations 1.21365 0.90492 1.02553 1.02510 1.20239 0.94670 0.87868 1.04010 1.18955 0.97374 0.93447 0.95516 1.20903 0.99899 0.93504 0.97878 1.21117 0.97379 0.96625 0.98610 1.21158 0.98320 0.99579 0.94816 1.21113 0.99766 0.93944 0.98923 1.21023 0.96299 0.96456 0.98331 1.23210 1.02811 0.99553 0.91943 1.22482 0.98007 1.03022 0.96175 0.85321 1.19459 0.89375 0.76367 0.81750 1.90686 1.32706 1.52420 1.65795 1.45909 1.12638 1.67368 1.11182 1.21343 0.85916 0.99632 0.92662 1.21261 0.95907 1.01506 0.94234 1.21562 0.98040 0.89945 1.02303 1.20171 0.92256 0.91410 0.90090 1.42292 1.10807 1.48221 1.35815 1.19212 0.92192 1.12686 1.12728 0.91352 1.24699 0.95393 0.99917 1.00899 1.69679 1.04969 1.48635 1.34874 0.86307 0.78420 0.80666 0.81061 1.21374 1.21725 1.21255 1.22977 1.01676 0.98960 0.96554 1.22962 0.99606 1.02807 0.96129 0.91713 0.91560 0.91652 0.86209 0.86078 0.86237 0.86163 0.86068 0.87588 0.87333 0.76665 0.91366 0.91713 0.91988 0.89347 0.96132 0.96066 0.78238 0.93585 0.89407 0.88717 0.89007 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.64 37.16 0.36 -0.38 16 2 C -0.07 -0.59 2.36 -155.66 -0.37 -0.96 16 3 C -0.05 -0.54 4.19 -104.63 -0.44 -0.98 16 4 C -0.10 -1.02 9.52 -39.58 -0.38 -1.40 16 5 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 6 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 7 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 8 C -0.10 -1.09 9.28 -39.58 -0.37 -1.46 16 9 C -0.14 -1.26 8.91 -26.73 -0.24 -1.50 16 10 C -0.18 -1.79 5.91 -91.77 -0.54 -2.33 16 11 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 12 C 0.54 7.58 6.57 -10.99 -0.07 7.51 16 13 O -0.54 -9.57 16.43 5.55 0.09 -9.48 16 14 N -0.72 -9.36 5.55 -60.29 -0.33 -9.70 16 15 C 0.13 1.90 5.59 -4.04 -0.02 1.87 16 16 C -0.09 -1.37 5.23 -26.73 -0.14 -1.51 16 17 C -0.12 -1.92 1.67 -154.51 -0.26 -2.18 16 18 C 0.19 3.87 6.12 -4.04 -0.02 3.85 16 19 N -0.73 -18.34 5.31 -59.91 -0.32 -18.66 16 20 C -0.24 -6.68 9.98 -15.06 -0.15 -6.83 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.01 13.08 55.49 0.73 -27.28 16 24 Si 0.90 22.56 29.56 -169.99 -5.02 17.53 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C -0.16 -2.43 9.88 -26.73 -0.26 -2.69 16 29 C -0.18 -2.45 9.39 -26.74 -0.25 -2.70 16 30 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.12 1.18 6.58 -52.49 -0.35 0.83 16 38 H 0.11 0.73 8.05 -51.93 -0.42 0.31 16 39 H 0.11 1.15 6.36 -51.93 -0.33 0.82 16 40 H 0.40 4.31 8.48 -40.82 -0.35 3.96 16 41 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 42 H 0.06 0.99 7.13 -51.93 -0.37 0.62 16 43 H 0.06 0.82 7.90 -51.93 -0.41 0.41 16 44 H 0.09 1.56 7.01 -51.93 -0.36 1.20 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.45 8.11 -51.93 -0.42 0.03 16 47 H 0.38 10.04 6.82 -40.82 -0.28 9.76 16 48 H 0.25 7.41 8.32 -40.82 -0.34 7.07 16 49 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 50 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 51 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 52 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 LS Contribution 426.41 15.07 6.43 6.43 Total: -1.00 -33.26 426.41 -11.58 -44.83 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -8.70 Total: 13.17 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -4.44 Total: -16.84 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.07 Total: -55.64 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -33.26 -11.58 -44.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166265297.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.717 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds