Wall clock time and date at job start Wed Apr 1 2020 02:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38258 * 120.00086 * 2 1 4 4 C 1.38210 * 120.00006 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99957 * 359.97438 * 4 3 2 6 6 C 1.38217 * 120.00204 * 0.02562 * 5 4 3 7 7 C 1.38212 * 119.99690 * 180.02562 * 2 1 3 8 8 C 1.50702 * 120.00586 * 359.97228 * 7 2 1 9 9 H 1.09004 * 115.54297 * 334.31202 * 8 7 2 10 10 C 1.52991 * 117.49964 * 188.59965 * 8 7 2 11 11 C 1.52998 * 60.00309 * 252.51182 * 10 8 7 12 12 H 1.08994 * 117.51751 * 107.48198 * 11 10 8 13 13 C 1.50701 * 117.49928 * 252.51455 * 11 10 8 14 14 O 1.21284 * 119.99840 * 68.61910 * 13 11 10 15 15 N 1.34776 * 120.00142 * 248.61971 * 13 11 10 16 16 C 1.46495 * 120.00240 * 175.06686 * 15 13 11 17 17 C 1.53001 * 109.47197 * 184.97453 * 16 15 13 18 18 C 1.52999 * 109.47161 * 183.98198 * 17 16 15 19 19 C 1.53002 * 115.54829 * 65.33006 * 18 17 16 20 20 N 1.46502 * 109.47206 * 65.04700 * 19 18 17 21 21 C 1.36930 * 119.99844 * 185.03335 * 20 19 18 22 22 H 1.08002 * 120.00541 * 4.97063 * 21 20 19 23 23 C 1.38815 * 119.99929 * 184.98132 * 21 20 19 24 24 N 1.31622 * 120.00091 * 184.70457 * 23 21 20 25 25 Si 1.86802 * 119.99874 * 4.70665 * 23 21 20 26 26 H 1.48502 * 109.47301 * 94.27596 * 25 23 21 27 27 H 1.48499 * 109.47285 * 214.27655 * 25 23 21 28 28 H 1.48501 * 109.47043 * 334.27403 * 25 23 21 29 29 C 1.53000 * 117.49704 * 279.65981 * 18 17 16 30 30 C 1.52999 * 117.49799 * 211.00146 * 18 17 16 31 31 H 1.09007 * 109.46807 * 269.97383 * 1 2 3 32 32 H 1.09000 * 109.47276 * 29.97234 * 1 2 3 33 33 H 1.08993 * 109.47367 * 149.97528 * 1 2 3 34 34 H 1.08004 * 119.99500 * 0.02562 * 3 2 1 35 35 H 1.08000 * 120.00202 * 180.02562 * 4 3 2 36 36 H 1.08002 * 120.00235 * 180.30460 * 5 4 3 37 37 H 1.07992 * 120.00235 * 179.97438 * 6 5 4 38 38 H 1.09001 * 117.50640 * 0.02562 * 10 8 7 39 39 H 1.09003 * 117.49735 * 145.02260 * 10 8 7 40 40 H 0.97000 * 119.99713 * 355.06796 * 15 13 11 41 41 H 1.08998 * 109.47208 * 304.97672 * 16 15 13 42 42 H 1.09006 * 109.46979 * 64.97592 * 16 15 13 43 43 H 1.08996 * 109.47065 * 303.98724 * 17 16 15 44 44 H 1.08998 * 109.46578 * 63.98532 * 17 16 15 45 45 H 1.09000 * 109.46856 * 185.04641 * 19 18 17 46 46 H 1.08998 * 109.47228 * 305.04561 * 19 18 17 47 47 H 0.97002 * 119.99627 * 5.02577 * 20 19 18 48 48 H 0.96996 * 119.99934 * 179.97438 * 24 23 21 49 49 H 1.08996 * 117.50441 * 0.02562 * 29 18 17 50 50 H 1.09005 * 117.49889 * 145.02352 * 29 18 17 51 51 H 1.09007 * 117.50017 * 214.97898 * 30 18 17 52 52 H 1.08994 * 117.50003 * 359.97438 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0005 7 6 2.1980 -1.1970 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 1 0.4422 -2.4662 0.4263 10 6 2.2535 -3.7848 0.2018 11 6 1.6782 -3.4527 -1.1764 12 1 2.3765 -3.1340 -1.9502 13 6 0.5049 -4.2682 -1.6556 14 8 -0.5736 -4.1564 -1.1122 15 7 0.6542 -5.1217 -2.6879 16 6 -0.4550 -5.9927 -3.0844 17 6 0.0119 -6.9415 -4.1902 18 6 -1.1711 -7.7829 -4.6734 19 6 -2.2936 -7.0071 -5.3656 20 7 -1.7892 -6.4271 -6.6128 21 6 -2.5886 -5.6000 -7.3557 22 1 -3.5603 -5.3108 -6.9835 23 6 -2.1501 -5.1333 -8.5873 24 7 -2.8771 -4.2658 -9.2591 25 14 -0.5284 -5.7366 -9.2912 26 1 -0.7790 -6.8864 -10.1970 27 1 0.1197 -4.6387 -10.0527 28 1 0.3635 -6.1643 -8.1835 29 6 -1.5672 -8.9956 -3.8288 30 6 -0.8734 -9.1961 -5.1784 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6583 2.1326 0.0004 35 1 4.1205 2.1326 -0.0001 36 1 5.3517 -0.0001 0.0040 37 1 4.1206 -2.1323 -0.0010 38 1 3.3307 -3.6849 0.3353 39 1 1.7835 -4.5932 0.7620 40 1 1.4960 -5.1592 -3.1684 41 1 -0.7867 -6.5733 -2.2236 42 1 -1.2811 -5.3843 -3.4526 43 1 0.4093 -6.3613 -5.0230 44 1 0.7898 -7.5983 -3.8009 45 1 -3.1194 -7.6832 -5.5872 46 1 -2.6427 -6.2100 -4.7093 47 1 -0.8889 -6.6289 -6.9123 48 1 -2.5705 -3.9394 -10.1195 49 1 -0.9853 -9.1938 -2.9287 50 1 -2.6274 -9.2411 -3.7666 51 1 -1.4774 -9.5734 -6.0037 52 1 0.1653 -9.5263 -5.1669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167437566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:01 Heat of formation + Delta-G solvation = 20.290551 kcal Electronic energy + Delta-G solvation = -28794.605998 eV Core-core repulsion = 24952.521045 eV Total energy + Delta-G solvation = -3842.084953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.39990 -40.32383 -39.58871 -37.40282 -36.14095 -35.78963 -33.74101 -33.23659 -31.75117 -31.06746 -28.16100 -27.82231 -26.05658 -24.87807 -24.29728 -23.77182 -22.92021 -22.33283 -21.55401 -20.95915 -20.35944 -19.25632 -18.44853 -17.47022 -17.12547 -16.73783 -16.61399 -16.33120 -16.24162 -15.84097 -15.55071 -15.36749 -15.12552 -14.91359 -14.75338 -14.62401 -14.27908 -14.07908 -13.96092 -13.57805 -13.46925 -13.20860 -13.11966 -13.07128 -12.87076 -12.84719 -12.55100 -12.29361 -12.16599 -12.08763 -11.94557 -11.87690 -11.80190 -11.60415 -11.43192 -11.12966 -11.03482 -10.90810 -10.61105 -10.11824 -9.66930 -9.39196 -9.28729 -8.04332 -5.37591 0.36397 0.48597 1.34365 1.41258 1.45861 1.48166 2.09904 2.47247 2.65954 2.83436 3.06677 3.26083 3.51683 3.66416 3.69816 3.78065 3.85158 3.90213 3.95452 4.00277 4.03933 4.08929 4.16709 4.19685 4.26100 4.40208 4.42117 4.43127 4.60334 4.64346 4.72547 4.73879 4.76918 4.84008 4.90744 4.92718 4.95289 4.96354 5.08059 5.11385 5.13358 5.18056 5.24681 5.28469 5.30493 5.34423 5.43652 5.60283 5.63340 5.73744 5.75603 6.12867 6.19873 6.52402 7.07316 7.21035 7.82941 8.06244 9.17716 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010434 B = 0.002346 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.933537 B =11931.541005 C =13360.600211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.095 4.095 3 C -0.131 4.131 4 C -0.126 4.126 5 C -0.129 4.129 6 C -0.119 4.119 7 C -0.069 4.069 8 C -0.094 4.094 9 H 0.105 0.895 10 C -0.118 4.118 11 C -0.180 4.180 12 H 0.142 0.858 13 C 0.535 3.465 14 O -0.586 6.586 15 N -0.713 5.713 16 C 0.130 3.870 17 C -0.076 4.076 18 C -0.147 4.147 19 C 0.188 3.812 20 N -0.749 5.749 21 C -0.236 4.236 22 H 0.047 0.953 23 C -0.067 4.067 24 N -0.986 5.986 25 Si 0.963 3.037 26 H -0.281 1.281 27 H -0.295 1.295 28 H -0.244 1.244 29 C -0.150 4.150 30 C -0.162 4.162 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.133 0.867 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.138 0.862 39 H 0.103 0.897 40 H 0.415 0.585 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.017 0.983 46 H 0.018 0.982 47 H 0.370 0.630 48 H 0.258 0.742 49 H 0.118 0.882 50 H 0.093 0.907 51 H 0.083 0.917 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.375 0.514 23.396 31.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.137 4.137 7 C -0.069 4.069 8 C -0.112 4.112 9 H 0.123 0.877 10 C -0.155 4.155 11 C -0.201 4.201 12 H 0.160 0.840 13 C 0.323 3.677 14 O -0.467 6.467 15 N -0.364 5.364 16 C 0.006 3.994 17 C -0.113 4.113 18 C -0.148 4.148 19 C 0.062 3.938 20 N -0.395 5.395 21 C -0.367 4.367 22 H 0.065 0.935 23 C -0.258 4.258 24 N -0.637 5.637 25 Si 0.790 3.210 26 H -0.207 1.207 27 H -0.222 1.222 28 H -0.169 1.169 29 C -0.187 4.187 30 C -0.199 4.199 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.121 0.879 40 H 0.252 0.748 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.081 0.919 44 H 0.119 0.881 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.204 0.796 48 H 0.067 0.933 49 H 0.136 0.864 50 H 0.111 0.889 51 H 0.102 0.898 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 19.399 0.663 23.733 30.660 hybrid contribution 0.097 0.282 -1.359 1.391 sum 19.496 0.945 22.374 29.691 Atomic orbital electron populations 1.20834 0.91384 1.02654 1.02647 1.19961 0.96371 0.93227 0.99971 1.21271 0.95071 0.97527 1.01047 1.21473 0.94073 0.99349 0.99509 1.21450 1.01132 0.92092 0.99969 1.21304 0.92836 0.99632 0.99933 1.19082 0.93835 0.92291 1.01661 1.20981 1.00512 0.89070 1.00680 0.87687 1.23255 1.01624 0.97244 0.93414 1.22322 0.99465 1.03445 0.94847 0.83994 1.20181 0.88917 0.79230 0.79382 1.90685 1.29335 1.67755 1.58911 1.45850 1.17581 1.39615 1.33401 1.21185 0.88912 0.91751 0.97571 1.21127 0.96293 0.97083 0.96837 1.21445 0.98267 0.90015 1.05106 1.20231 0.93743 0.93975 0.85817 1.42631 1.14737 1.57302 1.24831 1.19007 0.99022 1.19823 0.98868 0.93502 1.25603 1.02781 0.99767 0.97639 1.69916 1.41544 1.36206 1.15999 0.85282 0.79780 0.77257 0.78687 1.20716 1.22183 1.16854 1.23084 1.01705 0.98810 0.95150 1.23074 1.02526 0.96540 0.97772 0.90469 0.90938 0.92765 0.84945 0.84086 0.83655 0.83673 0.84444 0.87856 0.74807 0.91158 0.94696 0.91875 0.88143 0.96466 0.96439 0.79595 0.93307 0.86410 0.88886 0.89797 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 9.33 71.24 0.66 -1.74 16 2 C -0.10 -1.93 5.88 -19.86 -0.12 -2.05 16 3 C -0.13 -2.27 9.70 22.27 0.22 -2.06 16 4 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16 5 C -0.13 -1.72 10.05 22.27 0.22 -1.49 16 6 C -0.12 -1.74 9.30 22.27 0.21 -1.54 16 7 C -0.07 -1.30 5.61 -19.86 -0.11 -1.42 16 8 C -0.09 -1.86 4.66 -11.54 -0.05 -1.91 16 9 H 0.11 2.58 6.43 -2.38 -0.02 2.56 16 10 C -0.12 -1.65 9.56 30.59 0.29 -1.35 16 11 C -0.18 -3.38 5.82 -11.54 -0.07 -3.45 16 12 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 13 C 0.54 14.26 7.61 87.66 0.67 14.92 16 14 O -0.59 -20.98 16.27 -3.04 -0.05 -21.03 16 15 N -0.71 -16.63 5.55 -463.06 -2.57 -19.20 16 16 C 0.13 3.53 5.59 86.38 0.48 4.01 16 17 C -0.08 -1.82 5.13 30.59 0.16 -1.67 16 18 C -0.15 -4.10 1.53 -52.18 -0.08 -4.18 16 19 C 0.19 7.43 5.92 86.38 0.51 7.94 16 20 N -0.75 -35.49 5.23 -343.45 -1.80 -37.29 16 21 C -0.24 -13.93 10.47 84.04 0.88 -13.05 16 22 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 23 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 24 N -0.99 -64.73 13.97 21.65 0.30 -64.43 16 25 Si 0.96 45.63 28.00 68.60 1.92 47.56 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 27 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 28 H -0.24 -10.05 6.16 99.48 0.61 -9.43 16 29 C -0.15 -3.23 9.94 30.62 0.30 -2.93 16 30 C -0.16 -3.79 9.94 30.62 0.30 -3.49 16 31 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 33 H 0.05 1.32 6.65 -2.39 -0.02 1.30 16 34 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.15 1.35 6.02 -2.91 -0.02 1.33 16 38 H 0.14 1.08 6.18 -2.39 -0.01 1.06 16 39 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.42 7.01 8.48 -92.71 -0.79 6.22 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.03 1.25 6.82 -2.38 -0.02 1.23 16 43 H 0.06 1.73 7.73 -2.39 -0.02 1.71 16 44 H 0.10 1.72 8.09 -2.39 -0.02 1.70 16 45 H 0.02 0.71 8.09 -2.39 -0.02 0.69 16 46 H 0.02 0.75 6.89 -2.39 -0.02 0.74 16 47 H 0.37 16.40 5.07 -92.71 -0.47 15.93 16 48 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 49 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 51 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 52 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -79.19 421.21 2.56 -76.64 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -0.42 Total: 38.35 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 5.17 Total: -20.59 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -4.06 Total: -120.91 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.05 Total: -21.03 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.92 Total: 47.56 kcal Total: -79.19 2.56 -76.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167437566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.926 kcal (2) G-P(sol) polarization free energy of solvation -79.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds