Wall clock time and date at job start Wed Apr 1 2020 02:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50704 * 115.54781 * 2 1 4 4 C 1.38238 * 119.99959 * 40.99346 * 3 2 1 5 5 C 1.38232 * 119.99947 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00213 * 0.26401 * 5 4 3 7 7 C 1.38236 * 119.99536 * 359.45695 * 6 5 4 8 8 C 1.38226 * 120.00038 * 220.96713 * 3 2 1 9 9 C 1.52992 * 117.49815 * 214.33647 * 2 1 3 10 10 C 1.53000 * 117.51995 * 145.70230 * 2 1 3 11 11 H 1.08996 * 117.49549 * 359.97438 * 10 2 1 12 12 C 1.50700 * 117.49964 * 214.96679 * 10 2 1 13 13 O 1.21288 * 119.99737 * 10.76398 * 12 10 2 14 14 N 1.34773 * 120.00070 * 190.75871 * 12 10 2 15 15 C 1.46926 * 120.62790 * 359.72530 * 14 12 10 16 16 C 1.53623 * 108.54317 * 126.37034 * 15 14 12 17 17 C 1.53038 * 109.24262 * 54.85071 * 16 15 14 18 18 C 1.53005 * 109.46010 * 178.49520 * 17 16 15 19 19 N 1.46507 * 109.46653 * 295.06749 * 18 17 16 20 20 C 1.36940 * 119.99514 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99835 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99778 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99810 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99999 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46729 * 90.00840 * 24 22 20 26 26 H 1.48499 * 109.47509 * 210.00675 * 24 22 20 27 27 H 1.48496 * 109.47201 * 330.00950 * 24 22 20 28 28 C 1.53040 * 109.54325 * 298.51285 * 17 16 15 29 29 C 1.46927 * 120.62897 * 180.02562 * 14 12 10 30 30 H 1.09001 * 109.46998 * 34.41134 * 1 2 3 31 31 H 1.08997 * 109.46666 * 154.41714 * 1 2 3 32 32 H 1.08999 * 109.46886 * 274.41282 * 1 2 3 33 33 H 1.07999 * 119.99711 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.99938 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.00356 * 179.71956 * 6 5 4 36 36 H 1.08007 * 119.99728 * 180.29830 * 7 6 5 37 37 H 1.08004 * 120.00482 * 359.97438 * 8 3 2 38 38 H 1.08995 * 117.50095 * 359.97188 * 9 2 1 39 39 H 1.09007 * 117.50201 * 144.99910 * 9 2 1 40 40 H 1.09004 * 109.58590 * 246.20087 * 15 14 12 41 41 H 1.08995 * 109.59217 * 6.62790 * 15 14 12 42 42 H 1.09004 * 109.63401 * 294.86577 * 16 15 14 43 43 H 1.08994 * 109.46392 * 174.73953 * 16 15 14 44 44 H 1.08998 * 109.46120 * 58.53926 * 17 16 15 45 45 H 1.08992 * 109.47180 * 55.06818 * 18 17 16 46 46 H 1.08999 * 109.47233 * 175.07067 * 18 17 16 47 47 H 0.96988 * 120.00118 * 0.02562 * 19 18 17 48 48 H 0.97001 * 119.99686 * 179.97438 * 23 22 20 49 49 H 1.09005 * 109.49894 * 301.41801 * 28 17 16 50 50 H 1.08988 * 109.50271 * 181.31863 * 28 17 16 51 51 H 1.08993 * 109.58818 * 353.37100 * 29 14 12 52 52 H 1.09001 * 109.58489 * 113.80073 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 6 1.6628 2.3730 0.7853 5 6 2.2593 3.6200 0.7857 6 6 3.3696 3.8554 -0.0033 7 6 3.8902 2.8404 -0.7842 8 6 3.2936 1.5934 -0.7848 9 6 2.2364 -1.1206 -0.7655 10 6 2.2370 -1.1209 0.7646 11 1 1.6121 -1.8584 1.2682 12 6 3.5300 -0.7809 1.4600 13 8 3.8739 0.3771 1.5684 14 7 4.3041 -1.7636 1.9615 15 6 3.8978 -3.1706 1.8433 16 6 5.0462 -3.9579 1.1942 17 6 6.3273 -3.7397 2.0025 18 6 7.4660 -4.5516 1.3819 19 7 7.1685 -5.9811 1.5025 20 6 8.0506 -6.9076 1.0137 21 1 8.9656 -6.5844 0.5397 22 6 7.7690 -8.2620 1.1284 23 7 6.6541 -8.6557 1.7065 24 14 8.9725 -9.5258 0.4622 25 1 9.9441 -9.8917 1.5240 26 1 8.2300 -10.7377 0.0318 27 1 9.7001 -8.9528 -0.6985 28 6 6.6943 -2.2540 1.9890 29 6 5.5671 -1.4477 2.6426 30 1 -0.3633 0.8478 -0.5808 31 1 -0.3632 -0.9269 -0.4438 32 1 -0.3633 0.0791 1.0246 33 1 0.7928 2.1903 1.3985 34 1 1.8550 4.4118 1.3990 35 1 3.8329 4.8310 -0.0064 36 1 4.7607 3.0229 -1.3970 37 1 3.6982 0.8016 -1.3978 38 1 1.6113 -1.8581 -1.2687 39 1 3.1714 -0.8745 -1.2690 40 1 3.6880 -3.5748 2.8337 41 1 3.0060 -3.2424 1.2207 42 1 5.1971 -3.6099 0.1723 43 1 4.7987 -5.0193 1.1842 44 1 6.1680 -4.0651 3.0305 45 1 7.5675 -4.2892 0.3289 46 1 8.3970 -4.3291 1.9032 47 1 6.3466 -6.2712 1.9278 48 1 6.4571 -9.6021 1.7863 49 1 6.8297 -1.9220 0.9596 50 1 7.6194 -2.1027 2.5450 51 1 5.7771 -0.3825 2.5475 52 1 5.4905 -1.7146 3.6967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205722802.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:50 Heat of formation + Delta-G solvation = 24.439943 kcal Electronic energy + Delta-G solvation = -30149.387945 eV Core-core repulsion = 26307.482923 eV Total energy + Delta-G solvation = -3841.905022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.85817 -39.31349 -37.79707 -36.72617 -34.89002 -32.85663 -31.33182 -30.99888 -30.54847 -30.24949 -28.81822 -26.80521 -24.71154 -23.40289 -23.29098 -23.04267 -22.30098 -21.51345 -20.32190 -19.58768 -18.72319 -17.58456 -17.06570 -16.66805 -15.80346 -15.39178 -14.97203 -14.87997 -14.72886 -14.49227 -14.30316 -14.03512 -13.78933 -13.63204 -13.51206 -13.46314 -13.18432 -13.04681 -12.76950 -12.53529 -12.36329 -12.32158 -12.18634 -12.00894 -11.79170 -11.18727 -11.15678 -11.05597 -10.99736 -10.84827 -10.62833 -10.41512 -10.34355 -10.28401 -10.25814 -9.99678 -9.67808 -9.65199 -8.88086 -8.85213 -8.54690 -8.39869 -6.92333 -5.78092 -3.05992 1.38266 1.47899 2.52465 2.94532 3.42483 3.47613 3.47963 3.49266 3.90262 4.25397 4.39605 4.49717 4.58060 4.64588 4.77592 4.91702 4.97855 5.01697 5.04229 5.07181 5.13378 5.21782 5.30686 5.38947 5.40127 5.43824 5.47814 5.54458 5.55789 5.60365 5.64520 5.66923 5.72468 5.83728 5.85132 5.97363 6.00412 6.04442 6.06147 6.10538 6.19917 6.28747 6.46119 6.49566 6.50529 6.54103 6.63786 6.65889 6.81270 6.92216 7.05193 7.44865 7.69332 8.23304 8.41464 9.52598 10.10810 10.45653 11.44943 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020495 B = 0.002223 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.888221 B =12592.671049 C =13062.271021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.063 4.063 3 C -0.013 4.013 4 C -0.107 4.107 5 C -0.119 4.119 6 C -0.128 4.128 7 C -0.115 4.115 8 C -0.099 4.099 9 C -0.145 4.145 10 C -0.173 4.173 11 H 0.127 0.873 12 C 0.539 3.461 13 O -0.525 6.525 14 N -0.605 5.605 15 C 0.107 3.893 16 C -0.123 4.123 17 C -0.094 4.094 18 C 0.158 3.842 19 N -0.732 5.732 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.125 4.125 29 C 0.115 3.885 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.017 0.983 46 H 0.018 0.982 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.064 0.936 50 H 0.074 0.926 51 H 0.088 0.912 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.494 22.093 -2.422 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.063 4.063 3 C -0.013 4.013 4 C -0.126 4.126 5 C -0.137 4.137 6 C -0.146 4.146 7 C -0.133 4.133 8 C -0.117 4.117 9 C -0.182 4.182 10 C -0.194 4.194 11 H 0.145 0.855 12 C 0.326 3.674 13 O -0.402 6.402 14 N -0.339 5.339 15 C -0.016 4.016 16 C -0.161 4.161 17 C -0.112 4.112 18 C 0.031 3.969 19 N -0.376 5.376 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.584 5.584 24 Si 0.738 3.262 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.163 4.163 29 C -0.008 4.008 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.092 0.908 51 H 0.107 0.893 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.158 22.634 -2.440 26.294 hybrid contribution 0.573 -1.205 -0.029 1.335 sum -12.585 21.429 -2.469 24.974 Atomic orbital electron populations 1.21361 0.90702 1.02602 1.02349 1.20252 0.94616 0.88361 1.03115 1.18653 0.94673 0.92154 0.95855 1.20727 1.00166 0.92956 0.98704 1.20978 0.96586 0.96857 0.99326 1.21006 0.96978 0.98886 0.97737 1.20978 0.99454 0.93405 0.99488 1.20829 0.95230 0.96719 0.98940 1.23283 1.03117 1.00451 0.91365 1.22424 0.97848 1.03284 0.95856 0.85513 1.19606 0.84277 0.85032 0.78474 1.90754 1.72786 1.18854 1.57787 1.48094 1.21913 1.06795 1.57071 1.21945 0.98269 0.80101 1.01295 1.21978 0.93947 1.01075 0.99119 1.21301 0.95815 0.94027 1.00104 1.20668 0.94177 0.85301 0.96791 1.42375 1.24579 0.99240 1.71421 1.19236 1.00186 0.86942 1.30511 0.91286 1.24725 0.97698 0.96972 1.01672 1.69652 1.24716 1.14765 1.49222 0.86195 0.80205 0.81354 0.78483 1.21755 1.21779 1.20804 1.21906 0.97686 0.95298 1.01450 1.21592 0.82734 1.00900 0.95525 0.91453 0.91726 0.91814 0.86828 0.86696 0.86773 0.86705 0.86930 0.87214 0.87909 0.91339 0.89920 0.91826 0.89472 0.91057 0.96478 0.96422 0.78284 0.93555 0.91711 0.90789 0.89343 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.08 37.16 0.34 -0.47 16 2 C -0.06 -0.60 2.51 -155.66 -0.39 -0.99 16 3 C -0.01 -0.15 3.25 -104.62 -0.34 -0.49 16 4 C -0.11 -1.19 9.30 -39.58 -0.37 -1.56 16 5 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 6 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 7 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 8 C -0.10 -1.18 7.98 -39.59 -0.32 -1.50 16 9 C -0.15 -1.29 9.20 -26.73 -0.25 -1.54 16 10 C -0.17 -1.74 4.33 -91.77 -0.40 -2.14 16 11 H 0.13 1.07 7.37 -51.93 -0.38 0.69 16 12 C 0.54 6.98 7.37 -10.99 -0.08 6.90 16 13 O -0.53 -8.19 12.61 5.55 0.07 -8.12 16 14 N -0.61 -7.54 2.97 -172.48 -0.51 -8.05 16 15 C 0.11 1.24 6.35 -3.49 -0.02 1.22 16 16 C -0.12 -1.76 5.26 -26.39 -0.14 -1.90 16 17 C -0.09 -1.44 2.19 -90.58 -0.20 -1.64 16 18 C 0.16 3.13 5.65 -4.04 -0.02 3.10 16 19 N -0.73 -18.13 5.32 -59.90 -0.32 -18.45 16 20 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 24 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 C -0.12 -1.64 5.36 -26.59 -0.14 -1.78 16 29 C 0.11 1.44 6.43 -3.69 -0.02 1.42 16 30 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.11 1.09 7.69 -52.49 -0.40 0.69 16 34 H 0.11 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.11 0.98 8.06 -52.48 -0.42 0.55 16 36 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.11 1.26 5.98 -52.48 -0.31 0.95 16 38 H 0.11 0.77 8.05 -51.93 -0.42 0.35 16 39 H 0.10 1.00 6.14 -51.93 -0.32 0.68 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.81 5.91 -51.93 -0.31 0.51 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 1.44 7.15 -51.93 -0.37 1.06 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.38 9.83 6.84 -40.82 -0.28 9.55 16 48 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.07 0.91 8.14 -51.94 -0.42 0.49 16 51 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 52 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 406.44 15.07 6.12 6.12 Total: -1.00 -32.39 406.44 -11.33 -43.72 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -8.61 Total: 8.42 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -3.79 Total: -13.81 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.11 Total: -53.63 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.07 Total: -8.12 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.39 -11.33 -43.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205722802.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.160 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds