Wall clock time and date at job start Wed Apr 1 2020 02:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 120.00135 * 2 1 4 4 C 1.38214 * 119.99944 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99903 * 359.81540 * 4 3 2 6 6 C 1.38209 * 120.00059 * 0.41774 * 5 4 3 7 7 C 1.50703 * 120.00112 * 179.80979 * 6 5 4 8 8 H 1.08997 * 115.55157 * 154.05781 * 7 6 5 9 9 C 1.52998 * 117.51624 * 8.35630 * 7 6 5 10 10 C 1.52993 * 60.00056 * 252.51727 * 9 7 6 11 11 H 1.09007 * 117.51968 * 107.48350 * 10 9 7 12 12 C 1.50699 * 117.50150 * 252.50735 * 10 9 7 13 13 O 1.21290 * 119.99414 * 68.62558 * 12 10 9 14 14 N 1.34774 * 120.00218 * 248.62245 * 12 10 9 15 15 C 1.46931 * 120.62813 * 180.02562 * 14 12 10 16 16 C 1.53198 * 108.76994 * 233.63182 * 15 14 12 17 17 C 1.53039 * 109.31479 * 305.36109 * 16 15 14 18 18 C 1.52993 * 109.46337 * 181.38731 * 17 16 15 19 19 N 1.46496 * 109.47551 * 174.97346 * 18 17 16 20 20 C 1.36934 * 120.00548 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99288 * 0.02562 * 20 19 18 22 22 C 1.38805 * 120.00389 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.53040 * 109.52198 * 61.37489 * 17 16 15 29 29 C 1.46918 * 120.63158 * 0.02562 * 14 12 10 30 30 C 1.38208 * 119.99737 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47295 * 270.02285 * 1 2 3 32 32 H 1.08999 * 109.47076 * 30.01408 * 1 2 3 33 33 H 1.08998 * 109.47408 * 150.01418 * 1 2 3 34 34 H 1.08005 * 120.00266 * 0.02562 * 3 2 1 35 35 H 1.08005 * 119.99647 * 180.02562 * 4 3 2 36 36 H 1.08000 * 119.99782 * 180.22883 * 5 4 3 37 37 H 1.09004 * 117.50267 * 145.02616 * 9 7 6 38 38 H 1.09003 * 117.50019 * 0.02562 * 9 7 6 39 39 H 1.08994 * 109.59076 * 113.84597 * 15 14 12 40 40 H 1.08994 * 109.58664 * 353.41413 * 15 14 12 41 41 H 1.09007 * 109.49455 * 185.41484 * 16 15 14 42 42 H 1.09003 * 109.49913 * 65.31886 * 16 15 14 43 43 H 1.09001 * 109.46020 * 301.36639 * 17 16 15 44 44 H 1.09004 * 109.46862 * 54.97544 * 18 17 16 45 45 H 1.09004 * 109.46998 * 294.98022 * 18 17 16 46 46 H 0.96999 * 119.99694 * 0.02562 * 19 18 17 47 47 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.49643 * 58.58247 * 28 17 16 49 49 H 1.09008 * 109.49644 * 178.67819 * 28 17 16 50 50 H 1.09001 * 109.59169 * 246.15211 * 29 14 12 51 51 H 1.09001 * 109.58612 * 6.44123 * 29 14 12 52 52 H 1.08001 * 120.00251 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0049 6 6 3.5806 -1.1970 0.0001 7 6 4.3340 -2.5021 0.0005 8 1 3.8016 -3.3522 0.4271 9 6 5.8493 -2.4434 0.2036 10 6 5.2746 -2.7753 -1.1749 11 1 5.3484 -2.0110 -1.9486 12 6 5.3940 -4.1990 -1.6543 13 8 4.7573 -5.0770 -1.1113 14 7 6.2081 -4.4965 -2.6863 15 6 6.3346 -5.8798 -3.1653 16 6 7.8178 -6.2630 -3.1793 17 6 8.5977 -5.2379 -4.0058 18 6 10.0741 -5.6364 -4.0507 19 7 10.7993 -4.7245 -4.9389 20 6 12.1446 -4.8866 -5.1364 21 1 12.6709 -5.6870 -4.6376 22 6 12.8317 -4.0222 -5.9774 23 7 14.1248 -4.1784 -6.1676 24 14 11.9211 -2.6383 -6.8406 25 1 11.4191 -3.1189 -8.1529 26 1 10.7758 -2.2011 -6.0025 27 1 12.8445 -1.4948 -7.0524 28 6 8.4622 -3.8547 -3.3650 29 6 6.9860 -3.4439 -3.3537 30 6 2.1980 -1.1969 0.0005 31 1 -0.3633 0.0004 1.0276 32 1 -0.3633 0.8898 -0.5140 33 1 -0.3634 -0.8901 -0.5136 34 1 1.6583 2.1327 0.0004 35 1 4.1204 2.1326 0.0010 36 1 5.3516 -0.0001 0.0091 37 1 6.3139 -3.2549 0.7639 38 1 6.3016 -1.4607 0.3374 39 1 5.9280 -5.9560 -4.1737 40 1 5.7907 -6.5486 -2.4983 41 1 7.9338 -7.2520 -3.6228 42 1 8.2003 -6.2743 -2.1586 43 1 8.1982 -5.2092 -5.0195 44 1 10.1639 -6.6562 -4.4252 45 1 10.4966 -5.5792 -3.0475 46 1 10.3266 -4.0055 -5.3865 47 1 14.6048 -3.5745 -6.7557 48 1 8.8386 -3.8889 -2.3426 49 1 9.0370 -3.1292 -3.9408 50 1 6.6325 -3.3217 -4.3775 51 1 6.8699 -2.5049 -2.8125 52 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206547562.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:15 Heat of formation + Delta-G solvation = 16.478207 kcal Electronic energy + Delta-G solvation = -29131.672979 eV Core-core repulsion = 25289.422710 eV Total energy + Delta-G solvation = -3842.250269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.75750 -39.75992 -38.13179 -36.63478 -35.11147 -32.98107 -32.80755 -31.45961 -30.99320 -30.69751 -27.40191 -27.14304 -25.05766 -23.90137 -23.42628 -23.03904 -22.39565 -21.38094 -20.44164 -19.91759 -18.85375 -17.95644 -17.49326 -16.86478 -16.22489 -15.53513 -15.41274 -15.23004 -14.70162 -14.52254 -14.42093 -14.24401 -14.13297 -14.07239 -13.64752 -13.47485 -13.22464 -13.04285 -12.75398 -12.64132 -12.54281 -12.47533 -12.36358 -12.18361 -11.95912 -11.62215 -11.42054 -11.29685 -11.23588 -10.94058 -10.93529 -10.75791 -10.56924 -10.43472 -10.27647 -10.13036 -9.85668 -9.59805 -9.07604 -8.91603 -8.83697 -8.71803 -7.24238 -5.78326 -3.13688 0.94958 1.05866 2.33124 2.79853 3.29089 3.32848 3.36231 3.42468 3.73692 4.07726 4.34981 4.46665 4.49535 4.56526 4.58608 4.64999 4.75498 4.77733 4.84635 4.86157 4.96446 4.99045 5.06825 5.10511 5.21847 5.24429 5.32287 5.37204 5.38881 5.46516 5.46713 5.53565 5.60148 5.68215 5.70662 5.71871 5.76245 5.81197 5.82500 5.90057 6.05306 6.10645 6.14930 6.25048 6.27893 6.31139 6.33532 6.48154 6.67589 6.67866 6.78523 7.27620 7.98320 8.03704 8.40749 9.19911 9.92113 10.12186 11.40211 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.002161 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.926880 B =12956.558628 C =14222.562251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.125 4.125 4 C -0.113 4.113 5 C -0.125 4.125 6 C -0.048 4.048 7 C -0.084 4.084 8 H 0.126 0.874 9 C -0.142 4.142 10 C -0.178 4.178 11 H 0.126 0.874 12 C 0.546 3.454 13 O -0.547 6.547 14 N -0.603 5.603 15 C 0.112 3.888 16 C -0.125 4.125 17 C -0.098 4.098 18 C 0.162 3.838 19 N -0.755 5.755 20 C -0.243 4.243 21 H 0.089 0.911 22 C 0.003 3.997 23 N -0.934 5.934 24 Si 0.885 3.115 25 H -0.285 1.285 26 H -0.278 1.278 27 H -0.291 1.291 28 C -0.127 4.127 29 C 0.105 3.895 30 C -0.110 4.110 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.027 0.973 45 H 0.026 0.974 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.069 0.931 51 H 0.085 0.915 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.930 8.503 13.257 31.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.131 4.131 5 C -0.143 4.143 6 C -0.048 4.048 7 C -0.103 4.103 8 H 0.144 0.856 9 C -0.179 4.179 10 C -0.199 4.199 11 H 0.144 0.856 12 C 0.334 3.666 13 O -0.425 6.425 14 N -0.336 5.336 15 C -0.010 4.010 16 C -0.164 4.164 17 C -0.117 4.117 18 C 0.035 3.965 19 N -0.401 5.401 20 C -0.373 4.373 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.583 5.583 24 Si 0.716 3.284 25 H -0.211 1.211 26 H -0.204 1.204 27 H -0.218 1.218 28 C -0.165 4.165 29 C -0.018 4.018 30 C -0.128 4.128 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.045 0.955 45 H 0.044 0.956 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.100 0.900 50 H 0.087 0.913 51 H 0.103 0.897 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -27.026 7.927 13.543 31.252 hybrid contribution -0.271 1.132 -0.910 1.478 sum -27.297 9.060 12.632 31.413 Atomic orbital electron populations 1.20800 0.91144 1.02858 1.02377 1.19913 0.96118 0.93054 0.99429 1.21047 0.94328 0.97487 1.01473 1.21121 0.94290 0.97949 0.99718 1.21075 1.00126 0.91908 1.01202 1.19108 0.93300 0.92905 0.99465 1.21074 0.91934 0.96818 1.00448 0.85600 1.23137 0.95345 1.03851 0.95551 1.22362 1.07707 0.96054 0.93727 0.85610 1.19573 0.78635 0.89198 0.79164 1.90671 1.45833 1.49093 1.56940 1.48043 1.43419 1.09211 1.32899 1.21647 0.97256 0.82240 0.99839 1.21901 0.93905 0.99383 1.01176 1.21365 0.97077 0.94269 0.99004 1.20647 0.88343 0.93504 0.93973 1.42718 1.07048 1.35089 1.55237 1.19068 0.82917 1.12439 1.22870 0.89289 1.24685 0.95488 0.99109 1.00026 1.69705 1.06804 1.40127 1.41621 0.86539 0.78990 0.82911 0.79981 1.21127 1.20387 1.21758 1.21955 0.94294 0.98012 1.02238 1.21903 0.91965 0.90251 0.97680 1.20877 0.93321 0.97777 1.00836 0.91125 0.91534 0.91448 0.86174 0.85932 0.85791 0.87603 0.87266 0.91502 0.89126 0.90409 0.91392 0.91038 0.95462 0.95592 0.80723 0.93080 0.91273 0.89974 0.91283 0.89693 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.09 -0.68 5.88 -104.63 -0.62 -1.29 16 3 C -0.13 -0.95 9.70 -39.58 -0.38 -1.33 16 4 C -0.11 -0.86 10.05 -39.59 -0.40 -1.26 16 5 C -0.13 -1.03 9.30 -39.59 -0.37 -1.40 16 6 C -0.05 -0.43 5.61 -104.62 -0.59 -1.02 16 7 C -0.08 -0.80 5.55 -91.77 -0.51 -1.30 16 8 H 0.13 1.33 7.67 -51.93 -0.40 0.93 16 9 C -0.14 -1.20 9.56 -26.74 -0.26 -1.46 16 10 C -0.18 -1.74 4.60 -91.78 -0.42 -2.16 16 11 H 0.13 1.09 6.82 -51.92 -0.35 0.73 16 12 C 0.55 6.88 7.48 -10.99 -0.08 6.80 16 13 O -0.55 -8.54 15.67 5.55 0.09 -8.45 16 14 N -0.60 -7.10 2.97 -172.75 -0.51 -7.62 16 15 C 0.11 1.30 6.43 -3.70 -0.02 1.28 16 16 C -0.12 -1.51 5.36 -26.61 -0.14 -1.65 16 17 C -0.10 -1.39 2.19 -90.58 -0.20 -1.59 16 18 C 0.16 3.02 5.65 -4.05 -0.02 3.00 16 19 N -0.76 -17.42 5.12 -59.91 -0.31 -17.73 16 20 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 21 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 22 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 23 N -0.93 -29.23 13.97 55.49 0.78 -28.46 16 24 Si 0.89 21.69 27.74 -169.99 -4.71 16.98 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.24 6.52 56.52 0.37 -5.88 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 C -0.13 -1.67 5.25 -26.59 -0.14 -1.81 16 29 C 0.10 1.12 6.30 -3.69 -0.02 1.10 16 30 C -0.11 -0.97 9.39 -39.58 -0.37 -1.34 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 33 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 34 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 36 H 0.12 0.85 6.02 -52.49 -0.32 0.53 16 37 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.11 0.74 6.17 -51.93 -0.32 0.42 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.12 7.00 -51.93 -0.36 0.75 16 41 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.36 8.00 4.71 -40.82 -0.19 7.80 16 47 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 48 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.08 1.21 7.15 -51.92 -0.37 0.84 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 51 H 0.08 0.76 5.67 -51.93 -0.29 0.47 16 52 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 409.84 15.07 6.18 6.18 Total: -1.00 -33.42 409.84 -11.47 -44.89 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -8.54 Total: 6.96 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -4.44 Total: -12.75 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.04 Total: -53.81 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.42 -11.47 -44.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206547562.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.367 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds