Wall clock time and date at job start Wed Apr 1 2020 02:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38256 * 120.00155 * 2 1 4 4 C 1.38208 * 120.00010 * 179.78673 * 3 2 1 5 5 C 1.38260 * 120.00078 * 0.43570 * 4 3 2 6 6 C 1.38212 * 119.99650 * 359.52112 * 5 4 3 7 7 C 1.38215 * 119.99787 * 179.97438 * 2 1 3 8 8 C 1.50700 * 119.99989 * 359.97438 * 7 2 1 9 9 H 1.08997 * 115.54953 * 334.30634 * 8 7 2 10 10 C 1.53002 * 117.49996 * 188.63011 * 8 7 2 11 11 C 1.52996 * 60.00235 * 252.51658 * 10 8 7 12 12 H 1.08997 * 117.49907 * 107.49159 * 11 10 8 13 13 C 1.50704 * 117.49676 * 252.51103 * 11 10 8 14 14 O 1.21280 * 120.00171 * 68.62542 * 13 11 10 15 15 N 1.34775 * 119.99665 * 248.62159 * 13 11 10 16 16 C 1.46922 * 120.63359 * 359.72347 * 15 13 11 17 17 C 1.53618 * 108.54633 * 126.36773 * 16 15 13 18 18 C 1.53040 * 109.24139 * 54.85323 * 17 16 15 19 19 C 1.53000 * 109.44931 * 178.49587 * 18 17 16 20 20 N 1.46498 * 109.47410 * 295.06773 * 19 18 17 21 21 C 1.36940 * 120.00043 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00139 * 359.97438 * 21 20 19 23 23 C 1.38810 * 119.99989 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99872 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00172 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47194 * 89.99445 * 25 23 21 27 27 H 1.48497 * 109.47402 * 209.99717 * 25 23 21 28 28 H 1.48501 * 109.47204 * 329.99637 * 25 23 21 29 29 C 1.53030 * 109.54072 * 298.51339 * 18 17 16 30 30 C 1.46926 * 120.62765 * 180.02562 * 15 13 11 31 31 H 1.08998 * 109.46845 * 270.01948 * 1 2 3 32 32 H 1.08998 * 109.46732 * 30.01373 * 1 2 3 33 33 H 1.08993 * 109.47519 * 150.01866 * 1 2 3 34 34 H 1.07998 * 120.00044 * 0.02562 * 3 2 1 35 35 H 1.08004 * 120.00275 * 180.23484 * 4 3 2 36 36 H 1.08002 * 120.00476 * 179.80744 * 5 4 3 37 37 H 1.07999 * 119.99941 * 180.25946 * 6 5 4 38 38 H 1.09004 * 117.49669 * 0.02562 * 10 8 7 39 39 H 1.08998 * 117.50050 * 144.99733 * 10 8 7 40 40 H 1.09001 * 109.58715 * 246.20242 * 16 15 13 41 41 H 1.09003 * 109.58571 * 6.62183 * 16 15 13 42 42 H 1.08998 * 109.63302 * 294.86127 * 17 16 15 43 43 H 1.09008 * 109.43366 * 174.72412 * 17 16 15 44 44 H 1.09006 * 109.46118 * 58.53864 * 18 17 16 45 45 H 1.09003 * 109.46988 * 55.06405 * 19 18 17 46 46 H 1.08997 * 109.47216 * 175.06397 * 19 18 17 47 47 H 0.97004 * 120.00037 * 359.97438 * 20 19 18 48 48 H 0.97001 * 119.99378 * 180.02562 * 24 23 21 49 49 H 1.09005 * 109.49868 * 301.41625 * 29 18 17 50 50 H 1.09007 * 109.49987 * 181.31561 * 29 18 17 51 51 H 1.08993 * 109.58798 * 353.37486 * 30 15 13 52 52 H 1.09004 * 109.58558 * 113.65753 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 0.0045 5 6 4.2717 -0.0001 -0.0002 6 6 3.5806 -1.1970 0.0007 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.4422 -2.4658 0.4284 10 6 2.2533 -3.7847 0.2059 11 6 1.6788 -3.4540 -1.1730 12 1 2.3779 -3.1364 -1.9465 13 6 0.5058 -4.2700 -1.6519 14 8 -0.5731 -4.1576 -1.1093 15 7 0.6556 -5.1246 -2.6832 16 6 1.9547 -5.2673 -3.3546 17 6 2.3398 -6.7544 -3.3628 18 6 1.2098 -7.5645 -4.0024 19 6 1.6044 -9.0420 -4.0470 20 7 2.7569 -9.2132 -4.9351 21 6 3.2897 -10.4590 -5.1331 22 1 2.8606 -11.3154 -4.6342 23 6 4.3820 -10.6211 -5.9741 24 7 4.9053 -9.5773 -6.5817 25 14 5.1093 -12.3204 -6.2437 26 1 4.4381 -12.9686 -7.3989 27 1 6.5631 -12.1985 -6.5205 28 1 4.9049 -13.1452 -5.0258 29 6 -0.0675 -7.4026 -3.1754 30 6 -0.4787 -5.9265 -3.1618 31 1 -0.3633 0.0003 1.0277 32 1 -0.3633 0.8899 -0.5140 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6584 2.1326 0.0004 35 1 4.1205 2.1326 0.0083 36 1 5.3518 -0.0002 0.0001 37 1 4.1206 -2.1323 0.0013 38 1 3.3305 -3.6845 0.3398 39 1 1.7832 -4.5922 0.7670 40 1 1.8791 -4.9009 -4.3784 41 1 2.7097 -4.6958 -2.8147 42 1 2.4995 -7.0970 -2.3404 43 1 3.2552 -6.8888 -3.9391 44 1 1.0341 -7.2049 -5.0163 45 1 1.8657 -9.3788 -3.0438 46 1 0.7668 -9.6306 -4.4212 47 1 3.1421 -8.4441 -5.3835 48 1 5.6684 -9.6907 -7.1697 49 1 0.1147 -7.7391 -2.1547 50 1 -0.8657 -7.9984 -3.6183 51 1 -1.3298 -5.7902 -2.4947 52 1 -0.7499 -5.6110 -4.1693 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206555164.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:26 Heat of formation + Delta-G solvation = 13.961716 kcal Electronic energy + Delta-G solvation = -29336.697739 eV Core-core repulsion = 25494.338347 eV Total energy + Delta-G solvation = -3842.359392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.73553 -39.71820 -37.96451 -36.42391 -34.93135 -33.12348 -32.85309 -31.29097 -30.70429 -30.29715 -27.23764 -26.88200 -24.90541 -24.19660 -23.40091 -23.05842 -21.68940 -21.54410 -20.55615 -19.99519 -18.76594 -17.80850 -17.07309 -16.62331 -16.18534 -15.49342 -15.28196 -15.12529 -14.76946 -14.51643 -14.35941 -14.09655 -14.00310 -13.78546 -13.67557 -13.36456 -13.23974 -12.88740 -12.58392 -12.50116 -12.42864 -12.40768 -12.26376 -12.12688 -11.81983 -11.43561 -11.21401 -11.14381 -11.00607 -10.88810 -10.84980 -10.68581 -10.42771 -10.33732 -10.29107 -10.00796 -9.77148 -9.65773 -9.04186 -8.88231 -8.73489 -8.61847 -6.92528 -5.78214 -3.06174 1.00959 1.11242 2.40510 2.88962 3.35762 3.42467 3.47853 3.49255 3.80376 4.16865 4.43117 4.53589 4.57057 4.57918 4.64317 4.74343 4.76842 4.88559 4.95443 5.02179 5.05008 5.09484 5.19059 5.27225 5.35839 5.36625 5.40237 5.42678 5.51448 5.55029 5.59820 5.62891 5.66722 5.79180 5.80361 5.81965 5.93106 5.95327 5.98010 6.09105 6.18433 6.23384 6.25035 6.27307 6.40427 6.43973 6.46947 6.63324 6.73241 6.80055 6.91361 7.36979 7.69227 8.11373 8.41331 9.52456 10.10594 10.45323 11.44804 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.002082 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.720664 B =13442.385600 C =14705.324958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.123 4.123 6 C -0.115 4.115 7 C -0.053 4.053 8 C -0.085 4.085 9 H 0.128 0.872 10 C -0.142 4.142 11 C -0.176 4.176 12 H 0.126 0.874 13 C 0.546 3.454 14 O -0.549 6.549 15 N -0.602 5.602 16 C 0.104 3.896 17 C -0.124 4.124 18 C -0.094 4.094 19 C 0.158 3.842 20 N -0.732 5.732 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.125 4.125 30 C 0.113 3.887 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.065 0.935 50 H 0.075 0.925 51 H 0.089 0.911 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.425 21.643 13.976 26.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.074 4.074 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.141 4.141 6 C -0.133 4.133 7 C -0.054 4.054 8 C -0.104 4.104 9 H 0.146 0.854 10 C -0.180 4.180 11 C -0.197 4.197 12 H 0.144 0.856 13 C 0.334 3.666 14 O -0.428 6.428 15 N -0.335 5.335 16 C -0.018 4.018 17 C -0.162 4.162 18 C -0.113 4.113 19 C 0.030 3.970 20 N -0.376 5.376 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.164 4.164 30 C -0.010 4.010 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.090 0.910 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.107 0.893 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.971 21.505 14.260 26.728 hybrid contribution 0.811 -0.757 -0.577 1.251 sum -6.159 20.748 13.682 25.605 Atomic orbital electron populations 1.20871 0.91070 1.03272 1.02497 1.19750 0.96209 0.92337 0.99140 1.21024 0.94290 0.97363 1.01165 1.21141 0.94303 0.98095 1.00318 1.21116 0.99912 0.92404 1.00698 1.21086 0.93533 0.98461 1.00248 1.18989 0.93010 0.92687 1.00668 1.21089 1.00829 0.87904 1.00561 0.85449 1.23133 1.00477 0.98707 0.95645 1.22366 1.00373 1.03296 0.93703 0.85573 1.19569 0.88537 0.79275 0.79230 1.90659 1.27725 1.67324 1.57082 1.48062 1.11973 1.40686 1.32755 1.22010 0.83807 0.98389 0.97592 1.21990 0.99710 0.92532 1.01943 1.21307 0.93831 0.97229 0.98934 1.20668 0.90608 0.91771 0.93905 1.42375 1.33818 1.07586 1.53839 1.19236 1.09390 0.86266 1.22001 0.91270 1.24728 0.98947 0.97244 1.00159 1.69654 1.26211 1.28180 1.34303 0.86193 0.78298 0.83850 0.77881 1.21760 1.21780 1.20803 1.21913 0.98324 0.95059 1.01083 1.21642 0.88968 0.90545 0.99796 0.91075 0.91618 0.90678 0.86082 0.86158 0.86009 0.85730 0.87306 0.87671 0.91138 0.89777 0.91713 0.89367 0.90998 0.96438 0.96389 0.78281 0.93550 0.91604 0.90652 0.89283 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.33 36.01 0.34 -0.64 16 2 C -0.07 -0.69 5.88 -104.62 -0.62 -1.30 16 3 C -0.12 -1.00 9.70 -39.59 -0.38 -1.38 16 4 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 5 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 6 C -0.12 -1.01 9.30 -39.58 -0.37 -1.37 16 7 C -0.05 -0.51 5.61 -104.62 -0.59 -1.10 16 8 C -0.09 -0.84 4.66 -91.77 -0.43 -1.27 16 9 H 0.13 1.39 6.43 -51.93 -0.33 1.05 16 10 C -0.14 -1.28 9.56 -26.73 -0.26 -1.54 16 11 C -0.18 -1.82 4.60 -91.77 -0.42 -2.24 16 12 H 0.13 1.18 6.81 -51.93 -0.35 0.82 16 13 C 0.55 7.15 7.48 -10.98 -0.08 7.06 16 14 O -0.55 -8.73 15.67 5.56 0.09 -8.64 16 15 N -0.60 -7.51 2.97 -172.48 -0.51 -8.02 16 16 C 0.10 1.21 6.33 -3.49 -0.02 1.19 16 17 C -0.12 -1.76 5.26 -26.39 -0.14 -1.90 16 18 C -0.09 -1.44 2.19 -90.58 -0.20 -1.63 16 19 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 20 N -0.73 -18.06 5.32 -59.91 -0.32 -18.38 16 21 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 25 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 C -0.13 -1.61 5.36 -26.59 -0.14 -1.76 16 30 C 0.11 1.39 6.43 -3.69 -0.02 1.36 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.07 0.70 6.65 -51.93 -0.35 0.35 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.12 0.91 6.02 -52.49 -0.32 0.60 16 38 H 0.11 0.80 6.18 -51.93 -0.32 0.47 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.83 5.67 -51.93 -0.29 0.54 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.09 1.44 7.15 -51.92 -0.37 1.07 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.38 9.80 6.84 -40.82 -0.28 9.52 16 48 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 51 H 0.09 1.15 7.00 -51.93 -0.36 0.78 16 52 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 409.38 15.07 6.17 6.17 Total: -1.00 -32.24 409.38 -11.71 -43.95 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -8.44 Total: 8.22 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -4.40 Total: -13.45 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.11 Total: -53.50 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.24 -11.71 -43.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206555164.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.909 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds