Wall clock time and date at job start Wed Apr 1 2020 02:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38212 * 120.00276 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99871 * 359.94637 * 4 3 2 6 6 C 1.38214 * 120.00226 * 0.02773 * 5 4 3 7 7 C 1.50695 * 120.00376 * 179.97438 * 6 5 4 8 8 H 1.09002 * 115.55031 * 154.27418 * 7 6 5 9 9 C 1.52998 * 117.49724 * 8.61398 * 7 6 5 10 10 C 1.52995 * 117.50373 * 299.99010 * 7 6 5 11 11 H 1.09004 * 117.49108 * 359.97438 * 10 7 6 12 12 C 1.50696 * 117.50269 * 214.98050 * 10 7 6 13 13 O 1.21288 * 119.99795 * 359.97438 * 12 10 7 14 14 N 1.34778 * 120.00093 * 179.97438 * 12 10 7 15 15 C 1.46499 * 119.99770 * 179.97438 * 14 12 10 16 16 C 1.53005 * 109.46968 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.46746 * 179.97438 * 16 15 14 18 18 H 1.08999 * 110.64560 * 305.69910 * 17 16 15 19 19 C 1.55167 * 110.71618 * 182.55904 * 17 16 15 20 20 C 1.54909 * 101.57902 * 206.13687 * 19 17 16 21 21 N 1.47425 * 104.83462 * 37.00869 * 20 19 17 22 22 C 1.36938 * 125.64595 * 155.90534 * 21 20 19 23 23 H 1.07995 * 119.99569 * 179.97438 * 22 21 20 24 24 C 1.38810 * 119.99973 * 359.97438 * 22 21 20 25 25 N 1.31621 * 120.00308 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99696 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47316 * 60.00388 * 26 24 22 28 28 H 1.48503 * 109.46786 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47221 * 300.00006 * 26 24 22 30 30 C 1.47314 * 108.73706 * 335.71773 * 21 20 19 31 31 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 32 32 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 33 33 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 34 34 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 35 35 H 1.08005 * 120.00042 * 359.97239 * 3 2 1 36 36 H 1.08001 * 119.99977 * 179.97438 * 4 3 2 37 37 H 1.08003 * 119.99944 * 180.02562 * 5 4 3 38 38 H 1.09000 * 117.50026 * 359.97438 * 9 7 6 39 39 H 1.08997 * 117.50123 * 144.99615 * 9 7 6 40 40 H 0.96993 * 119.99718 * 359.97438 * 14 12 10 41 41 H 1.09003 * 109.47188 * 299.99902 * 15 14 12 42 42 H 1.09000 * 109.47454 * 60.00365 * 15 14 12 43 43 H 1.08995 * 109.47050 * 300.00320 * 16 15 14 44 44 H 1.09000 * 109.46632 * 59.99988 * 16 15 14 45 45 H 1.09002 * 111.00525 * 324.21023 * 19 17 16 46 46 H 1.09000 * 111.00164 * 88.02788 * 19 17 16 47 47 H 1.09003 * 110.36650 * 155.85174 * 20 19 17 48 48 H 1.09002 * 110.36721 * 278.17126 * 20 19 17 49 49 H 0.97003 * 119.99905 * 179.97438 * 25 24 22 50 50 H 1.09002 * 110.06367 * 241.87419 * 30 21 20 51 51 H 1.08999 * 109.85372 * 120.60629 * 30 21 20 52 52 H 1.07998 * 120.00075 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 0.0001 6 6 3.5807 -1.1970 0.0006 7 6 4.3342 -2.5020 0.0006 8 1 3.8021 -3.3520 0.4279 9 6 5.8495 -2.4428 0.2034 10 6 5.2745 -2.7750 -1.1750 11 1 5.3477 -2.0107 -1.9487 12 6 5.3942 -4.1987 -1.6543 13 8 4.7583 -5.0770 -1.1108 14 7 6.2078 -4.4960 -2.6868 15 6 6.3245 -5.8802 -3.1523 16 6 7.3038 -5.9425 -4.3262 17 6 7.4262 -7.3882 -4.8120 18 1 7.6952 -8.0490 -3.9879 19 6 8.4623 -7.4950 -5.9621 20 6 7.9574 -8.7481 -6.7201 21 7 6.4872 -8.6644 -6.6504 22 6 5.6123 -9.2479 -7.5275 23 1 4.5480 -9.1272 -7.3891 24 6 6.0933 -9.9945 -8.5943 25 7 7.3903 -10.1420 -8.7626 26 14 4.8996 -10.7910 -9.7903 27 1 4.0684 -9.7416 -10.4328 28 1 5.6600 -11.5274 -10.8318 29 1 4.0217 -11.7378 -9.0567 30 6 6.1143 -7.8531 -5.4788 31 6 2.1981 -1.1970 0.0058 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3633 0.8900 0.5138 34 1 -0.3633 -0.8900 0.5139 35 1 1.6583 2.1326 -0.0005 36 1 4.1204 2.1327 -0.0010 37 1 5.3517 0.0001 0.0001 38 1 6.3015 -1.4599 0.3363 39 1 6.3144 -3.2539 0.7638 40 1 6.7160 -3.7936 -3.1216 41 1 6.6908 -6.5073 -2.3394 42 1 5.3472 -6.2385 -3.4756 43 1 6.9372 -5.3155 -5.1389 44 1 8.2812 -5.5841 -4.0033 45 1 8.4294 -6.6124 -6.6008 46 1 9.4667 -7.6535 -5.5695 47 1 8.2902 -8.7234 -7.7578 48 1 8.3094 -9.6556 -6.2295 49 1 7.7264 -10.6640 -9.5080 50 1 5.5346 -8.4533 -4.7775 51 1 5.5336 -6.9875 -5.7975 52 1 1.6581 -2.1323 0.0108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267568376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:11 Heat of formation + Delta-G solvation = 21.448011 kcal Electronic energy + Delta-G solvation = -28102.390888 eV Core-core repulsion = 24260.356126 eV Total energy + Delta-G solvation = -3842.034762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.55236 -39.50481 -37.87598 -36.82464 -35.14877 -33.03254 -32.86275 -31.27366 -30.75759 -28.99504 -27.30426 -26.82141 -25.16240 -24.15966 -23.73189 -22.46384 -22.06576 -20.59930 -20.06962 -19.91827 -19.22740 -17.74834 -16.98143 -16.85298 -16.00679 -15.68902 -15.58803 -15.36816 -14.93561 -14.59830 -14.30200 -14.26567 -14.12502 -13.62576 -13.55485 -13.49238 -12.86013 -12.65742 -12.53919 -12.51066 -12.27870 -12.23505 -11.91069 -11.69290 -11.64321 -11.56547 -11.30225 -11.08331 -10.97782 -10.88443 -10.79172 -10.72620 -10.16892 -10.13589 -9.96926 -9.84418 -9.71808 -9.43814 -9.11381 -9.08581 -8.85116 -8.61079 -6.78569 -5.61402 -3.02632 0.93099 1.04217 2.35953 2.98334 3.28951 3.42950 3.46826 3.48326 3.71149 4.15018 4.36277 4.47192 4.51568 4.52543 4.57816 4.74310 4.75429 4.84276 4.97114 4.98977 5.08823 5.11344 5.24125 5.27261 5.31190 5.35909 5.45979 5.50931 5.56323 5.61462 5.65075 5.66466 5.74201 5.80497 5.80836 5.90988 6.03549 6.12029 6.19900 6.24049 6.24272 6.29358 6.40367 6.41828 6.62992 6.65892 6.66509 6.79992 7.00811 7.40327 7.56162 7.66601 7.89415 8.12503 8.40569 9.26540 9.87433 10.53096 11.42433 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016059 B = 0.001644 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.133827 B =17023.368124 C =18153.943830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.048 4.048 7 C -0.084 4.084 8 H 0.127 0.873 9 C -0.144 4.144 10 C -0.177 4.177 11 H 0.125 0.875 12 C 0.540 3.460 13 O -0.540 6.540 14 N -0.724 5.724 15 C 0.117 3.883 16 C -0.116 4.116 17 C -0.098 4.098 18 H 0.072 0.928 19 C -0.138 4.138 20 C 0.151 3.849 21 N -0.605 5.605 22 C -0.221 4.221 23 H 0.076 0.924 24 C -0.013 4.013 25 N -0.924 5.924 26 Si 0.914 3.086 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.286 1.286 30 C 0.139 3.861 31 C -0.109 4.109 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.400 0.600 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.105 0.895 48 H 0.010 0.990 49 H 0.252 0.748 50 H 0.020 0.980 51 H 0.023 0.977 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 24.654 19.668 31.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.048 4.048 7 C -0.102 4.102 8 H 0.145 0.855 9 C -0.182 4.182 10 C -0.198 4.198 11 H 0.143 0.857 12 C 0.325 3.675 13 O -0.417 6.417 14 N -0.374 5.374 15 C -0.006 4.006 16 C -0.154 4.154 17 C -0.117 4.117 18 H 0.090 0.910 19 C -0.177 4.177 20 C 0.027 3.973 21 N -0.332 5.332 22 C -0.349 4.349 23 H 0.094 0.906 24 C -0.208 4.208 25 N -0.572 5.572 26 Si 0.745 3.255 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.013 3.987 31 C -0.127 4.127 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.234 0.766 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.123 0.877 48 H 0.028 0.972 49 H 0.062 0.938 50 H 0.038 0.962 51 H 0.041 0.959 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.262 23.846 19.848 31.317 hybrid contribution -0.314 -0.127 -0.900 0.962 sum -4.576 23.719 18.948 30.701 Atomic orbital electron populations 1.20814 0.91082 1.02843 1.02532 1.19930 0.96183 0.93034 0.99212 1.21048 0.94328 0.97504 1.01465 1.21099 0.94294 0.97875 0.99903 1.21042 0.99984 0.91913 1.01481 1.19103 0.93320 0.92873 0.99492 1.21074 0.91883 0.96917 1.00352 0.85484 1.23135 0.95555 1.03687 0.95787 1.22355 1.07740 0.95998 0.93709 0.85708 1.19584 0.78993 0.89115 0.79761 1.90717 1.45100 1.49013 1.56869 1.45993 1.46068 1.10957 1.34418 1.21527 1.00837 0.81487 0.96744 1.21788 0.98434 0.98339 0.96837 1.22099 0.97767 0.93970 0.97905 0.90988 1.23040 0.96665 1.01316 0.96685 1.21919 0.83110 0.90921 1.01394 1.44587 1.02417 1.59165 1.26987 1.19052 0.88633 1.24271 1.02988 0.90618 1.24785 0.96179 1.00746 0.99135 1.69797 1.10553 1.44921 1.31978 0.86152 0.79688 0.79055 0.80610 1.21201 1.21583 1.21248 1.21421 0.93783 0.93967 0.89500 1.20914 0.93355 0.97878 1.00593 0.91012 0.91538 0.91385 0.86167 0.86003 0.85893 0.87374 0.87649 0.76568 0.91497 0.90930 0.91173 0.91640 0.92217 0.92506 0.87685 0.97180 0.93764 0.96232 0.95933 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.08 -0.66 5.88 -104.62 -0.62 -1.27 16 3 C -0.13 -0.91 9.70 -39.59 -0.38 -1.29 16 4 C -0.11 -0.79 10.05 -39.58 -0.40 -1.19 16 5 C -0.13 -0.94 9.30 -39.58 -0.37 -1.31 16 6 C -0.05 -0.42 5.61 -104.62 -0.59 -1.00 16 7 C -0.08 -0.75 5.55 -91.78 -0.51 -1.26 16 8 H 0.13 1.33 7.67 -51.93 -0.40 0.93 16 9 C -0.14 -1.04 9.56 -26.73 -0.26 -1.30 16 10 C -0.18 -1.55 5.82 -91.78 -0.53 -2.09 16 11 H 0.13 0.90 8.14 -51.93 -0.42 0.47 16 12 C 0.54 6.58 7.61 -10.99 -0.08 6.50 16 13 O -0.54 -8.81 16.26 5.55 0.09 -8.72 16 14 N -0.72 -7.81 5.56 -60.29 -0.33 -8.14 16 15 C 0.12 1.51 5.54 -4.04 -0.02 1.49 16 16 C -0.12 -1.49 4.72 -26.73 -0.13 -1.61 16 17 C -0.10 -1.66 2.95 -88.78 -0.26 -1.92 16 18 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 19 C -0.14 -2.57 6.54 -24.58 -0.16 -2.74 16 20 C 0.15 3.72 5.89 -2.53 -0.01 3.71 16 21 N -0.61 -15.89 3.40 -169.83 -0.58 -16.46 16 22 C -0.22 -6.32 10.28 -15.06 -0.15 -6.47 16 23 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 24 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 25 N -0.92 -27.30 10.09 55.49 0.56 -26.74 16 26 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 C 0.14 2.95 6.13 -2.90 -0.02 2.93 16 31 C -0.11 -0.97 9.39 -39.58 -0.37 -1.34 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 34 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 35 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 36 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 37 H 0.12 0.69 6.02 -52.48 -0.32 0.37 16 38 H 0.11 0.56 6.18 -51.93 -0.32 0.24 16 39 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.40 3.15 8.47 -40.82 -0.35 2.80 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.09 7.58 -51.93 -0.39 0.70 16 43 H 0.07 0.91 8.01 -51.93 -0.42 0.50 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.11 2.90 5.87 -51.93 -0.31 2.59 16 48 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 49 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 51 H 0.02 0.48 7.73 -51.93 -0.40 0.07 16 52 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 417.53 15.07 6.29 6.29 Total: -1.00 -33.71 417.53 -12.37 -46.08 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.77 Total: 1.22 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -4.60 Total: -10.96 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.35 Total: -51.35 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.71 -12.37 -46.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267568376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.526 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds