Wall clock time and date at job start Wed Apr 1 2020 02:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38212 * 120.00276 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99871 * 359.94637 * 4 3 2 6 6 C 1.38214 * 120.00226 * 0.02773 * 5 4 3 7 7 C 1.50695 * 120.00376 * 179.97438 * 6 5 4 8 8 H 1.09002 * 115.55031 * 154.27418 * 7 6 5 9 9 C 1.52998 * 117.49724 * 8.61398 * 7 6 5 10 10 C 1.52995 * 117.50373 * 299.99010 * 7 6 5 11 11 H 1.09004 * 117.49108 * 359.97438 * 10 7 6 12 12 C 1.50696 * 117.50269 * 214.98050 * 10 7 6 13 13 O 1.21288 * 119.99795 * 359.97438 * 12 10 7 14 14 N 1.34778 * 120.00093 * 179.97438 * 12 10 7 15 15 C 1.46499 * 119.99770 * 179.97438 * 14 12 10 16 16 C 1.53005 * 109.46968 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.46746 * 179.97438 * 16 15 14 18 18 H 1.08999 * 110.64560 * 305.69910 * 17 16 15 19 19 C 1.55167 * 110.71618 * 182.55904 * 17 16 15 20 20 C 1.54909 * 101.57902 * 206.13687 * 19 17 16 21 21 N 1.47425 * 104.83462 * 37.00869 * 20 19 17 22 22 C 1.36938 * 125.64595 * 155.90534 * 21 20 19 23 23 H 1.07995 * 119.99569 * 179.97438 * 22 21 20 24 24 C 1.38810 * 119.99973 * 359.97438 * 22 21 20 25 25 N 1.31621 * 120.00308 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99696 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47316 * 60.00388 * 26 24 22 28 28 H 1.48503 * 109.46786 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47221 * 300.00006 * 26 24 22 30 30 C 1.47314 * 108.73706 * 335.71773 * 21 20 19 31 31 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 32 32 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 33 33 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 34 34 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 35 35 H 1.08005 * 120.00042 * 359.97239 * 3 2 1 36 36 H 1.08001 * 119.99977 * 179.97438 * 4 3 2 37 37 H 1.08003 * 119.99944 * 180.02562 * 5 4 3 38 38 H 1.09000 * 117.50026 * 359.97438 * 9 7 6 39 39 H 1.08997 * 117.50123 * 144.99615 * 9 7 6 40 40 H 0.96993 * 119.99718 * 359.97438 * 14 12 10 41 41 H 1.09003 * 109.47188 * 299.99902 * 15 14 12 42 42 H 1.09000 * 109.47454 * 60.00365 * 15 14 12 43 43 H 1.08995 * 109.47050 * 300.00320 * 16 15 14 44 44 H 1.09000 * 109.46632 * 59.99988 * 16 15 14 45 45 H 1.09002 * 111.00525 * 324.21023 * 19 17 16 46 46 H 1.09000 * 111.00164 * 88.02788 * 19 17 16 47 47 H 1.09003 * 110.36650 * 155.85174 * 20 19 17 48 48 H 1.09002 * 110.36721 * 278.17126 * 20 19 17 49 49 H 0.97003 * 119.99905 * 179.97438 * 25 24 22 50 50 H 1.09002 * 110.06367 * 241.87419 * 30 21 20 51 51 H 1.08999 * 109.85372 * 120.60629 * 30 21 20 52 52 H 1.07998 * 120.00075 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 0.0001 6 6 3.5807 -1.1970 0.0006 7 6 4.3342 -2.5020 0.0006 8 1 3.8021 -3.3520 0.4279 9 6 5.8495 -2.4428 0.2034 10 6 5.2745 -2.7750 -1.1750 11 1 5.3477 -2.0107 -1.9487 12 6 5.3942 -4.1987 -1.6543 13 8 4.7583 -5.0770 -1.1108 14 7 6.2078 -4.4960 -2.6868 15 6 6.3245 -5.8802 -3.1523 16 6 7.3038 -5.9425 -4.3262 17 6 7.4262 -7.3882 -4.8120 18 1 7.6952 -8.0490 -3.9879 19 6 8.4623 -7.4950 -5.9621 20 6 7.9574 -8.7481 -6.7201 21 7 6.4872 -8.6644 -6.6504 22 6 5.6123 -9.2479 -7.5275 23 1 4.5480 -9.1272 -7.3891 24 6 6.0933 -9.9945 -8.5943 25 7 7.3903 -10.1420 -8.7626 26 14 4.8996 -10.7910 -9.7903 27 1 4.0684 -9.7416 -10.4328 28 1 5.6600 -11.5274 -10.8318 29 1 4.0217 -11.7378 -9.0567 30 6 6.1143 -7.8531 -5.4788 31 6 2.1981 -1.1970 0.0058 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3633 0.8900 0.5138 34 1 -0.3633 -0.8900 0.5139 35 1 1.6583 2.1326 -0.0005 36 1 4.1204 2.1327 -0.0010 37 1 5.3517 0.0001 0.0001 38 1 6.3015 -1.4599 0.3363 39 1 6.3144 -3.2539 0.7638 40 1 6.7160 -3.7936 -3.1216 41 1 6.6908 -6.5073 -2.3394 42 1 5.3472 -6.2385 -3.4756 43 1 6.9372 -5.3155 -5.1389 44 1 8.2812 -5.5841 -4.0033 45 1 8.4294 -6.6124 -6.6008 46 1 9.4667 -7.6535 -5.5695 47 1 8.2902 -8.7234 -7.7578 48 1 8.3094 -9.6556 -6.2295 49 1 7.7264 -10.6640 -9.5080 50 1 5.5346 -8.4533 -4.7775 51 1 5.5336 -6.9875 -5.7975 52 1 1.6581 -2.1323 0.0108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267568376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:10 Heat of formation + Delta-G solvation = 3.005602 kcal Electronic energy + Delta-G solvation = -28103.190610 eV Core-core repulsion = 24260.356126 eV Total energy + Delta-G solvation = -3842.834485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.32732 -40.25163 -39.41829 -37.60161 -36.38389 -34.75886 -33.39733 -32.52829 -31.73408 -30.71244 -28.38944 -27.74611 -26.79510 -25.26706 -24.45841 -23.36785 -22.93057 -21.92993 -21.52320 -20.74154 -20.41208 -18.89706 -18.52485 -17.57789 -17.11111 -16.95062 -16.62645 -16.29605 -16.14233 -15.83921 -15.58862 -15.09578 -15.01978 -14.67182 -14.60970 -14.28100 -14.03775 -13.81062 -13.59142 -13.52174 -13.34939 -13.18219 -13.11762 -13.01314 -12.82775 -12.80345 -12.67798 -12.25644 -12.21153 -12.04053 -11.86532 -11.78759 -11.64086 -11.51873 -11.44581 -11.43066 -11.25793 -10.90438 -10.74082 -10.11650 -9.65347 -9.40964 -8.88615 -7.78133 -5.22502 0.37020 0.48891 1.44211 1.46616 1.47721 1.54213 2.11464 2.48620 2.66143 3.07544 3.30297 3.50780 3.67178 3.73138 3.75080 3.86216 3.93376 3.96079 4.07009 4.10203 4.17889 4.21665 4.25681 4.32961 4.35764 4.50779 4.54481 4.62649 4.70176 4.73010 4.75372 4.80231 4.84673 4.88182 4.95087 5.01244 5.02735 5.08003 5.11424 5.17697 5.18464 5.25598 5.31381 5.42448 5.43749 5.50783 5.59557 5.68926 5.69091 5.72890 5.83006 6.13601 6.31766 6.55135 7.10954 7.23494 7.78682 8.42656 9.23162 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016059 B = 0.001644 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.133827 B =17023.368124 C =18153.943830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.116 4.116 5 C -0.129 4.129 6 C -0.058 4.058 7 C -0.096 4.096 8 H 0.101 0.899 9 C -0.122 4.122 10 C -0.175 4.175 11 H 0.148 0.852 12 C 0.534 3.466 13 O -0.590 6.590 14 N -0.710 5.710 15 C 0.123 3.877 16 C -0.099 4.099 17 C -0.085 4.085 18 H 0.078 0.922 19 C -0.121 4.121 20 C 0.149 3.851 21 N -0.629 5.629 22 C -0.243 4.243 23 H 0.075 0.925 24 C -0.068 4.068 25 N -0.948 5.948 26 Si 0.981 3.019 27 H -0.276 1.276 28 H -0.290 1.290 29 H -0.281 1.281 30 C 0.133 3.867 31 C -0.134 4.134 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.100 0.900 40 H 0.418 0.582 41 H 0.061 0.939 42 H 0.045 0.955 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.072 0.928 48 H -0.018 1.018 49 H 0.247 0.753 50 H 0.010 0.990 51 H 0.026 0.974 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 27.776 20.315 34.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.134 4.134 5 C -0.147 4.147 6 C -0.058 4.058 7 C -0.115 4.115 8 H 0.119 0.881 9 C -0.159 4.159 10 C -0.196 4.196 11 H 0.166 0.834 12 C 0.322 3.678 13 O -0.471 6.471 14 N -0.361 5.361 15 C -0.001 4.001 16 C -0.137 4.137 17 C -0.104 4.104 18 H 0.096 0.904 19 C -0.159 4.159 20 C 0.024 3.976 21 N -0.355 5.355 22 C -0.372 4.372 23 H 0.093 0.907 24 C -0.261 4.261 25 N -0.597 5.597 26 Si 0.809 3.191 27 H -0.202 1.202 28 H -0.216 1.216 29 H -0.207 1.207 30 C 0.008 3.992 31 C -0.152 4.152 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.157 0.843 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.119 0.881 40 H 0.256 0.744 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.087 0.913 46 H 0.105 0.895 47 H 0.090 0.910 48 H 0.000 1.000 49 H 0.057 0.943 50 H 0.028 0.972 51 H 0.044 0.956 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.281 27.014 20.500 34.070 hybrid contribution -0.660 -1.121 -1.064 1.681 sum -3.941 25.893 19.436 32.615 Atomic orbital electron populations 1.20843 0.90094 1.03457 1.02839 1.20184 0.97169 0.93053 0.99132 1.21360 0.94911 0.97896 1.00976 1.21452 0.94358 0.98767 0.98830 1.21290 1.01122 0.91373 1.00918 1.19147 0.93219 0.93187 1.00236 1.20970 0.93030 0.96527 1.00951 0.88088 1.23256 0.93912 1.04935 0.93788 1.22336 1.08381 0.94077 0.94796 0.83402 1.20206 0.78120 0.90144 0.79336 1.90699 1.47068 1.50794 1.58507 1.45829 1.45777 1.10588 1.33948 1.21294 0.99468 0.82655 0.96682 1.21624 1.00154 0.95280 0.96598 1.22020 0.94416 0.96846 0.97160 0.90369 1.22877 0.98318 0.98258 0.96470 1.21770 0.82761 0.92925 1.00150 1.44934 1.02985 1.59522 1.28101 1.19415 0.89267 1.24702 1.03829 0.90677 1.25645 0.97940 1.01584 1.00890 1.70057 1.12071 1.45347 1.32255 0.85122 0.77646 0.78144 0.78233 1.20184 1.21593 1.20732 1.21619 0.96286 0.93170 0.88089 1.21038 0.93994 0.98115 1.02066 0.90796 0.90179 0.91545 0.84343 0.83581 0.83698 0.84387 0.88113 0.74426 0.92025 0.93640 0.90737 0.88182 0.91323 0.89478 0.91011 0.99954 0.94297 0.97232 0.95649 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 10.01 71.24 0.71 -0.59 16 2 C -0.10 -1.45 5.88 -19.87 -0.12 -1.57 16 3 C -0.13 -1.69 9.70 22.27 0.22 -1.47 16 4 C -0.12 -1.31 10.05 22.27 0.22 -1.09 16 5 C -0.13 -1.60 9.30 22.27 0.21 -1.39 16 6 C -0.06 -0.96 5.61 -19.87 -0.11 -1.07 16 7 C -0.10 -1.69 5.55 -11.54 -0.06 -1.75 16 8 H 0.10 2.29 7.67 -2.39 -0.02 2.27 16 9 C -0.12 -1.48 9.56 30.59 0.29 -1.19 16 10 C -0.18 -2.77 5.82 -11.54 -0.07 -2.84 16 11 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 12 C 0.53 12.61 7.61 87.66 0.67 13.28 16 13 O -0.59 -19.79 16.26 -3.05 -0.05 -19.84 16 14 N -0.71 -13.89 5.56 -463.05 -2.57 -16.46 16 15 C 0.12 3.01 5.54 86.38 0.48 3.49 16 16 C -0.10 -2.23 4.72 30.59 0.14 -2.08 16 17 C -0.08 -2.73 2.95 -9.60 -0.03 -2.75 16 18 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 19 C -0.12 -4.27 6.54 31.99 0.21 -4.06 16 20 C 0.15 7.47 5.89 86.86 0.51 7.98 16 21 N -0.63 -33.72 3.40 -691.24 -2.35 -36.07 16 22 C -0.24 -14.22 10.28 84.03 0.86 -13.36 16 23 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 24 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 25 N -0.95 -57.60 10.09 21.65 0.22 -57.38 16 26 Si 0.98 46.88 29.55 68.60 2.03 48.91 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 28 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 29 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 30 C 0.13 5.68 6.13 86.67 0.53 6.21 16 31 C -0.13 -2.42 9.39 22.27 0.21 -2.21 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 34 H 0.07 0.74 8.08 -2.38 -0.02 0.72 16 35 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 37 H 0.15 1.04 6.02 -2.91 -0.02 1.03 16 38 H 0.14 0.85 6.18 -2.39 -0.01 0.84 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.42 5.15 8.47 -92.71 -0.79 4.36 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.05 1.37 7.58 -2.39 -0.02 1.35 16 43 H 0.07 1.68 8.01 -2.39 -0.02 1.66 16 44 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.07 2.32 8.05 -2.39 -0.02 2.30 16 46 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.07 4.09 5.87 -2.39 -0.01 4.07 16 48 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 49 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 50 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 51 H 0.03 1.07 7.73 -2.39 -0.02 1.05 16 52 H 0.11 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -77.18 417.53 2.74 -74.45 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.12 Total: 16.38 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 5.35 Total: -9.98 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -4.71 Total: -109.92 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.05 Total: -19.84 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -77.18 2.74 -74.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267568376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.452 kcal (2) G-P(sol) polarization free energy of solvation -77.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds