Wall clock time and date at job start Wed Apr 1 2020 02:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00254 * 2 1 4 4 C 1.38212 * 120.00319 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.26336 * 4 3 2 6 6 C 1.38208 * 120.00088 * 359.47803 * 5 4 3 7 7 C 1.50698 * 120.00211 * 180.23547 * 6 5 4 8 8 H 1.08997 * 115.55350 * 154.61145 * 7 6 5 9 9 C 1.53003 * 117.49492 * 8.90532 * 7 6 5 10 10 C 1.52998 * 59.99975 * 252.50707 * 9 7 6 11 11 H 1.09004 * 117.51547 * 107.48020 * 10 9 7 12 12 C 1.50696 * 117.50293 * 252.51063 * 10 9 7 13 13 O 1.21284 * 120.00326 * 68.62043 * 12 10 9 14 14 N 1.34775 * 120.00237 * 248.62497 * 12 10 9 15 15 C 1.46497 * 120.00542 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47547 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47176 * 180.02562 * 16 15 14 18 18 H 1.09000 * 110.64300 * 56.69067 * 17 16 15 19 19 C 1.55159 * 110.71863 * 180.02562 * 17 16 15 20 20 C 1.54908 * 101.58048 * 153.86549 * 19 17 16 21 21 N 1.47432 * 104.83349 * 322.98957 * 20 19 17 22 22 C 1.36930 * 125.64944 * 204.09374 * 21 20 19 23 23 H 1.08004 * 119.99985 * 180.02562 * 22 21 20 24 24 C 1.38810 * 120.00151 * 0.03815 * 22 21 20 25 25 N 1.31618 * 120.00088 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00055 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46990 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47328 * 120.00485 * 26 24 22 29 29 H 1.48510 * 109.47197 * 240.00520 * 26 24 22 30 30 C 1.47025 * 108.70068 * 24.12930 * 21 20 19 31 31 C 1.38216 * 120.00020 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46845 * 89.99859 * 1 2 3 33 33 H 1.08996 * 109.47280 * 210.00020 * 1 2 3 34 34 H 1.08999 * 109.46887 * 329.99914 * 1 2 3 35 35 H 1.07999 * 119.99740 * 0.02562 * 3 2 1 36 36 H 1.08002 * 119.99812 * 179.97438 * 4 3 2 37 37 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 38 38 H 1.08993 * 117.50074 * 359.97438 * 9 7 6 39 39 H 1.09004 * 117.49687 * 145.02249 * 9 7 6 40 40 H 0.97003 * 119.99918 * 359.97438 * 14 12 10 41 41 H 1.08993 * 109.47361 * 300.00567 * 15 14 12 42 42 H 1.09004 * 109.46854 * 59.99677 * 15 14 12 43 43 H 1.09003 * 109.47217 * 300.00021 * 16 15 14 44 44 H 1.09004 * 109.47097 * 60.00084 * 16 15 14 45 45 H 1.08993 * 111.00613 * 271.93590 * 19 17 16 46 46 H 1.09003 * 111.00278 * 35.79069 * 19 17 16 47 47 H 1.09003 * 110.36992 * 204.15691 * 20 19 17 48 48 H 1.08996 * 110.37013 * 81.82931 * 20 19 17 49 49 H 0.96994 * 120.00254 * 179.97438 * 25 24 22 50 50 H 1.08991 * 109.88297 * 239.52517 * 30 21 20 51 51 H 1.09002 * 110.01263 * 118.42862 * 30 21 20 52 52 H 1.08001 * 119.99666 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0066 6 6 3.5807 -1.1970 -0.0012 7 6 4.3341 -2.5021 -0.0024 8 1 3.8018 -3.3527 0.4233 9 6 5.8495 -2.4431 0.2005 10 6 5.2745 -2.7739 -1.1783 11 1 5.3479 -2.0088 -1.9512 12 6 5.3942 -4.1971 -1.6590 13 8 4.7580 -5.0759 -1.1168 14 7 6.2082 -4.4935 -2.6914 15 6 6.3250 -5.8771 -3.1585 16 6 7.3049 -5.9384 -4.3319 17 6 7.4263 -7.3833 -4.8200 18 1 6.4487 -7.7798 -5.0941 19 6 8.4154 -7.4789 -6.0116 20 6 8.9051 -8.9437 -5.8926 21 7 8.9977 -9.1941 -4.4427 22 6 9.7940 -10.1337 -3.8443 23 1 9.7899 -10.2397 -2.7695 24 6 10.6066 -10.9499 -4.6191 25 7 10.6122 -10.8203 -5.9288 26 14 11.6923 -12.2323 -3.8028 27 1 11.5029 -12.1768 -2.3309 28 1 11.3223 -13.5823 -4.2985 29 1 13.1146 -11.9575 -4.1300 30 6 8.0928 -8.2683 -3.7457 31 6 2.1981 -1.1970 -0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 1.6583 2.1326 0.0004 36 1 4.1204 2.1327 -0.0010 37 1 5.3517 -0.0001 -0.0115 38 1 6.3014 -1.4604 0.3343 39 1 6.3143 -3.2550 0.7598 40 1 6.7168 -3.7906 -3.1253 41 1 6.6907 -6.5051 -2.3462 42 1 5.3477 -6.2349 -3.4825 43 1 6.9387 -5.3104 -5.1442 44 1 8.2822 -5.5804 -4.0082 45 1 7.9027 -7.3142 -6.9592 46 1 9.2425 -6.7793 -5.8900 47 1 9.8834 -9.0559 -6.3601 48 1 8.1853 -9.6227 -6.3496 49 1 11.1803 -11.3903 -6.4702 50 1 8.6601 -7.6466 -3.0531 51 1 7.3318 -8.8286 -3.2026 52 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267568377.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:16 Heat of formation + Delta-G solvation = 21.208320 kcal Electronic energy + Delta-G solvation = -28070.922602 eV Core-core repulsion = 24228.877446 eV Total energy + Delta-G solvation = -3842.045156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.55483 -39.51274 -37.89664 -36.82530 -35.14992 -33.03946 -32.87895 -31.28392 -30.76471 -29.01306 -27.32111 -26.80977 -25.17520 -24.16722 -23.72709 -22.47738 -22.07792 -20.59278 -20.07114 -19.92497 -19.22670 -17.73544 -16.98615 -16.86529 -16.00535 -15.78815 -15.56608 -15.28476 -14.95350 -14.61780 -14.36592 -14.25503 -14.13939 -13.63898 -13.52527 -13.48145 -12.87260 -12.67213 -12.55967 -12.51201 -12.26268 -12.25028 -11.92391 -11.71542 -11.65066 -11.57158 -11.30706 -11.05668 -10.99700 -10.89235 -10.78883 -10.75120 -10.16231 -10.10849 -9.94921 -9.84550 -9.72722 -9.44307 -9.11545 -9.09650 -8.86332 -8.62292 -6.78898 -5.62294 -3.03490 0.91723 1.02566 2.36511 2.97931 3.28760 3.41357 3.46996 3.49513 3.71576 4.14766 4.36436 4.46928 4.50759 4.51926 4.57608 4.73758 4.74277 4.83687 4.96762 4.96889 5.07645 5.11623 5.21026 5.28342 5.31112 5.35306 5.44309 5.50573 5.57286 5.61989 5.65560 5.65746 5.73661 5.79172 5.80226 5.90800 6.03431 6.10838 6.20092 6.22386 6.24095 6.28207 6.40247 6.41576 6.62973 6.64358 6.66352 6.79780 7.00542 7.40588 7.55921 7.67180 7.88962 8.12841 8.40001 9.25931 9.87033 10.52487 11.41704 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.026361 B = 0.001508 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.928414 B =18564.857306 C =18847.622278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.126 4.126 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.047 4.047 7 C -0.085 4.085 8 H 0.127 0.873 9 C -0.144 4.144 10 C -0.177 4.177 11 H 0.125 0.875 12 C 0.540 3.460 13 O -0.540 6.540 14 N -0.724 5.724 15 C 0.117 3.883 16 C -0.116 4.116 17 C -0.098 4.098 18 H 0.072 0.928 19 C -0.138 4.138 20 C 0.151 3.849 21 N -0.605 5.605 22 C -0.220 4.220 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.923 5.923 26 Si 0.913 3.087 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.140 3.860 31 C -0.110 4.110 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.400 0.600 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.106 0.894 48 H 0.011 0.989 49 H 0.251 0.749 50 H 0.022 0.978 51 H 0.019 0.981 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.723 27.201 9.204 32.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.047 4.047 7 C -0.103 4.103 8 H 0.145 0.855 9 C -0.181 4.181 10 C -0.198 4.198 11 H 0.142 0.858 12 C 0.325 3.675 13 O -0.417 6.417 14 N -0.374 5.374 15 C -0.006 4.006 16 C -0.154 4.154 17 C -0.118 4.118 18 H 0.090 0.910 19 C -0.177 4.177 20 C 0.026 3.974 21 N -0.331 5.331 22 C -0.349 4.349 23 H 0.095 0.905 24 C -0.208 4.208 25 N -0.572 5.572 26 Si 0.744 3.256 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C 0.014 3.986 31 C -0.128 4.128 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.234 0.766 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.123 0.877 48 H 0.029 0.971 49 H 0.061 0.939 50 H 0.040 0.960 51 H 0.037 0.963 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.031 26.361 9.544 32.295 hybrid contribution 0.794 -0.360 0.049 0.874 sum -15.237 26.001 9.593 31.626 Atomic orbital electron populations 1.20807 0.91105 1.02855 1.02467 1.19925 0.96157 0.93038 0.99290 1.21047 0.94331 0.97497 1.01508 1.21105 0.94289 0.97889 0.99867 1.21056 1.00036 0.91910 1.01397 1.19107 0.93309 0.92890 0.99414 1.21080 0.91954 0.96888 1.00381 0.85481 1.23148 0.95449 1.03782 0.95725 1.22351 1.07784 0.95967 0.93719 0.85756 1.19584 0.79048 0.89119 0.79709 1.90716 1.45247 1.48937 1.56785 1.45995 1.45991 1.10959 1.34499 1.21525 1.00079 0.81625 0.97384 1.21783 0.99036 0.98079 0.96481 1.22100 0.99242 0.93072 0.97337 0.90967 1.23038 0.97567 1.01269 0.95828 1.21927 1.01949 0.88196 0.85336 1.44528 1.46894 1.39491 1.02209 1.19148 1.15221 1.09026 0.91460 0.90490 1.24783 1.00481 0.99986 0.95593 1.69813 1.42792 1.41505 1.03096 0.86007 0.80133 0.81160 0.78282 1.20539 1.21779 1.21773 1.21357 0.92259 0.91468 0.93531 1.20906 0.93354 0.97851 1.00673 0.91069 0.91394 0.91537 0.86177 0.85993 0.85856 0.87348 0.87542 0.76579 0.90893 0.91502 0.91663 0.91172 0.92506 0.92201 0.87681 0.97148 0.93858 0.96009 0.96289 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.01 36.01 0.36 -0.27 16 2 C -0.08 -0.63 5.88 -104.62 -0.62 -1.25 16 3 C -0.13 -0.88 9.70 -39.58 -0.38 -1.26 16 4 C -0.11 -0.77 10.05 -39.58 -0.40 -1.17 16 5 C -0.13 -0.93 9.29 -39.58 -0.37 -1.30 16 6 C -0.05 -0.40 5.61 -104.63 -0.59 -0.99 16 7 C -0.08 -0.76 5.56 -91.77 -0.51 -1.27 16 8 H 0.13 1.33 7.67 -51.93 -0.40 0.93 16 9 C -0.14 -1.10 9.56 -26.73 -0.26 -1.35 16 10 C -0.18 -1.56 5.82 -91.77 -0.53 -2.09 16 11 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 12 C 0.54 6.59 7.61 -10.99 -0.08 6.51 16 13 O -0.54 -8.83 16.26 5.55 0.09 -8.74 16 14 N -0.72 -7.82 5.56 -60.30 -0.33 -8.16 16 15 C 0.12 1.52 5.52 -4.05 -0.02 1.49 16 16 C -0.12 -1.48 4.71 -26.73 -0.13 -1.61 16 17 C -0.10 -1.66 2.98 -88.78 -0.26 -1.92 16 18 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 19 C -0.14 -2.57 6.53 -24.58 -0.16 -2.73 16 20 C 0.15 3.70 5.89 -2.53 -0.01 3.69 16 21 N -0.61 -15.84 3.39 -170.07 -0.58 -16.42 16 22 C -0.22 -6.28 10.27 -15.06 -0.15 -6.43 16 23 H 0.08 2.14 7.83 -52.48 -0.41 1.72 16 24 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 25 N -0.92 -27.26 10.09 55.49 0.56 -26.70 16 26 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 30 C 0.14 2.96 5.99 -3.06 -0.02 2.94 16 31 C -0.11 -0.93 9.39 -39.58 -0.37 -1.31 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 34 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 35 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.12 0.70 6.03 -52.48 -0.32 0.38 16 38 H 0.11 0.60 6.18 -51.93 -0.32 0.28 16 39 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.40 3.15 8.47 -40.82 -0.35 2.80 16 41 H 0.07 1.09 7.49 -51.93 -0.39 0.71 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 47 H 0.11 2.89 5.87 -51.93 -0.30 2.59 16 48 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 50 H 0.02 0.46 7.76 -51.93 -0.40 0.06 16 51 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 417.39 15.07 6.29 6.29 Total: -1.00 -33.67 417.39 -12.37 -46.05 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -8.77 Total: 1.08 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -4.60 Total: -10.80 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.35 Total: -51.28 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.67 -12.37 -46.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267568377.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.257 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds