Wall clock time and date at job start Wed Apr 1 2020 02:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46975 * 2 1 4 4 N 1.46504 * 109.47133 * 299.99955 * 3 2 1 5 5 C 1.36932 * 119.99717 * 179.97438 * 4 3 2 6 6 H 1.07993 * 120.00527 * 0.02562 * 5 4 3 7 7 C 1.38823 * 119.99844 * 180.02562 * 5 4 3 8 8 N 1.31614 * 120.00071 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99605 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47515 * 89.99926 * 9 7 5 11 11 H 1.48499 * 109.46928 * 209.99599 * 9 7 5 12 12 H 1.48503 * 109.47604 * 329.99507 * 9 7 5 13 13 N 1.46505 * 109.46724 * 240.00148 * 2 1 3 14 14 C 1.34776 * 120.00040 * 308.53870 * 13 2 1 15 15 O 1.21281 * 119.99965 * 5.73403 * 14 13 2 16 16 C 1.50699 * 120.00134 * 185.72883 * 14 13 2 17 17 H 1.08997 * 115.54862 * 123.72580 * 16 14 13 18 18 C 1.53005 * 117.49726 * 338.05884 * 16 14 13 19 19 C 1.52997 * 117.50017 * 269.39732 * 16 14 13 20 20 C 1.52994 * 117.49949 * 215.00356 * 19 16 14 21 21 C 1.50708 * 117.49755 * 359.97438 * 19 16 14 22 22 C 1.38232 * 119.99665 * 301.61778 * 21 19 16 23 23 C 1.38240 * 119.99458 * 179.78783 * 22 21 19 24 24 C 1.38228 * 120.00094 * 0.46571 * 23 22 21 25 25 C 1.38239 * 120.00244 * 359.76777 * 24 23 22 26 26 C 1.38234 * 119.99765 * 121.89539 * 21 19 16 27 27 C 1.52995 * 109.47131 * 120.00342 * 2 1 3 28 28 C 1.52999 * 117.50134 * 120.78930 * 27 2 1 29 29 C 1.52994 * 117.50423 * 52.12813 * 27 2 1 30 30 H 1.08996 * 109.47427 * 60.00290 * 1 2 3 31 31 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46641 * 299.99567 * 1 2 3 33 33 H 1.08997 * 109.47391 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47503 * 59.99869 * 3 2 1 35 35 H 0.97001 * 120.00067 * 0.02562 * 4 3 2 36 36 H 0.97005 * 120.00050 * 179.97438 * 8 7 5 37 37 H 0.96994 * 119.99618 * 128.54468 * 13 2 1 38 38 H 1.08996 * 117.49595 * 359.97438 * 18 16 14 39 39 H 1.08992 * 117.49893 * 145.01746 * 18 16 14 40 40 H 1.08997 * 109.47630 * 59.99535 * 20 19 16 41 41 H 1.09002 * 109.47203 * 180.02562 * 20 19 16 42 42 H 1.09005 * 109.46897 * 299.99426 * 20 19 16 43 43 H 1.07994 * 119.99977 * 359.97438 * 22 21 19 44 44 H 1.08005 * 119.99531 * 180.25226 * 23 22 21 45 45 H 1.08003 * 120.00272 * 179.78512 * 24 23 22 46 46 H 1.07993 * 119.99929 * 180.02562 * 25 24 23 47 47 H 1.07998 * 120.00223 * 359.97438 * 26 21 19 48 48 H 1.09003 * 115.54808 * 266.45562 * 27 2 1 49 49 H 1.09003 * 117.49787 * 359.97438 * 28 27 2 50 50 H 1.09005 * 117.49984 * 145.01570 * 28 27 2 51 51 H 1.09007 * 117.50156 * 214.98104 * 29 27 2 52 52 H 1.08999 * 117.49772 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8820 3.4442 -1.4126 6 1 2.5029 3.9691 -0.7017 7 6 1.4189 4.0988 -2.5458 8 7 1.7360 5.3592 -2.7535 9 14 0.3444 3.1911 -3.7750 10 1 -1.0833 3.3547 -3.4002 11 1 0.5665 3.7489 -5.1332 12 1 0.6956 1.7482 -3.7689 13 7 2.0183 -0.6906 -1.1963 14 6 1.5573 -1.9201 -1.4999 15 8 0.6639 -2.4119 -0.8436 16 6 2.1518 -2.6837 -2.6551 17 1 2.5498 -3.6689 -2.4123 18 6 2.8718 -1.8783 -3.7386 19 6 1.5047 -2.5024 -4.0296 20 6 1.4658 -3.7178 -4.9580 21 6 0.3211 -1.5742 -4.1245 22 6 -0.8062 -1.8114 -3.3606 23 6 -1.8901 -0.9575 -3.4444 24 6 -1.8503 0.1280 -4.2992 25 6 -0.7248 0.3625 -5.0667 26 6 0.3608 -0.4889 -4.9797 27 6 2.0401 -0.7213 1.2492 28 6 2.9305 -1.9482 1.0425 29 6 1.4901 -2.1209 1.5308 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 0.8899 35 1 0.9937 1.6618 -1.8345 36 1 1.4126 5.8165 -3.5456 37 1 2.6734 -0.2630 -1.7696 38 1 2.9151 -0.7961 -3.6159 39 1 3.7433 -2.3337 -4.2087 40 1 0.9066 -4.5222 -4.4803 41 1 0.9805 -3.4440 -5.8949 42 1 2.4830 -4.0529 -5.1606 43 1 -0.8390 -2.6621 -2.6961 44 1 -2.7694 -1.1406 -2.8445 45 1 -2.6985 0.7932 -4.3673 46 1 -0.6936 1.2109 -5.7343 47 1 1.2400 -0.3059 -5.5796 48 1 2.2541 -0.0828 2.1063 49 1 3.1527 -2.2417 0.0165 50 1 3.7301 -2.1170 1.7638 51 1 1.3426 -2.4034 2.5733 52 1 0.7646 -2.5278 0.8264 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267856197.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:32 Heat of formation + Delta-G solvation = 79.828248 kcal Electronic energy + Delta-G solvation = -32820.891420 eV Core-core repulsion = 28981.388215 eV Total energy + Delta-G solvation = -3839.503205 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.02379 -39.44460 -37.61320 -36.49021 -35.17186 -33.36938 -31.59677 -30.77437 -30.64185 -29.83432 -28.55856 -26.30191 -24.46722 -23.53308 -23.07666 -22.27645 -21.95128 -21.19489 -20.62602 -19.46798 -18.94414 -18.06656 -17.11623 -16.64101 -16.07470 -15.55292 -15.10573 -14.82672 -14.74289 -14.57104 -13.97973 -13.90478 -13.60968 -13.46724 -13.36791 -13.12169 -12.98968 -12.79307 -12.64061 -12.28977 -12.20475 -12.14127 -11.95619 -11.73173 -11.38579 -11.31056 -11.20985 -11.02032 -10.95704 -10.85053 -10.67601 -10.49253 -10.12727 -10.01886 -9.96567 -9.68220 -9.57175 -9.12925 -8.96038 -8.60591 -8.54803 -8.51197 -7.25344 -5.76116 -3.13981 1.48301 1.60352 2.63651 3.30700 3.36680 3.43745 3.44053 3.55544 3.91848 4.11318 4.41235 4.52015 4.60206 4.61195 4.83947 4.89403 5.04398 5.13923 5.17871 5.23297 5.24374 5.32968 5.46767 5.48887 5.50734 5.54675 5.57190 5.61093 5.67891 5.73626 5.76500 5.80283 5.81204 5.85439 5.88917 5.96778 6.05449 6.16721 6.21574 6.23582 6.29999 6.36832 6.49915 6.55463 6.65171 6.68305 6.71249 6.73454 6.88008 7.01753 7.16464 7.84738 7.97826 8.39892 8.52349 9.20035 9.91969 10.12042 11.39877 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008505 B = 0.006891 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3291.404079 B = 4062.118373 C = 5978.156864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.198 3.802 3 C 0.157 3.843 4 N -0.751 5.751 5 C -0.245 4.245 6 H 0.089 0.911 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.873 3.127 10 H -0.287 1.287 11 H -0.296 1.296 12 H -0.253 1.253 13 N -0.707 5.707 14 C 0.550 3.450 15 O -0.528 6.528 16 C -0.171 4.171 17 H 0.133 0.867 18 C -0.163 4.163 19 C -0.056 4.056 20 C -0.110 4.110 21 C -0.063 4.063 22 C -0.097 4.097 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.114 4.114 26 C -0.099 4.099 27 C -0.157 4.157 28 C -0.180 4.180 29 C -0.196 4.196 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.041 0.959 35 H 0.365 0.635 36 H 0.258 0.742 37 H 0.404 0.596 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.127 0.873 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.115 0.885 47 H 0.119 0.881 48 H 0.106 0.894 49 H 0.089 0.911 50 H 0.083 0.917 51 H 0.075 0.925 52 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.622 -19.548 -1.699 19.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.113 3.887 3 C 0.029 3.971 4 N -0.398 5.398 5 C -0.374 4.374 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.582 5.582 9 Si 0.702 3.298 10 H -0.214 1.214 11 H -0.223 1.223 12 H -0.178 1.178 13 N -0.358 5.358 14 C 0.338 3.662 15 O -0.408 6.408 16 C -0.191 4.191 17 H 0.151 0.849 18 C -0.200 4.200 19 C -0.056 4.056 20 C -0.167 4.167 21 C -0.063 4.063 22 C -0.115 4.115 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.132 4.132 26 C -0.117 4.117 27 C -0.176 4.176 28 C -0.218 4.218 29 C -0.232 4.232 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.199 0.801 36 H 0.068 0.932 37 H 0.240 0.760 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.145 0.855 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.133 0.867 47 H 0.137 0.863 48 H 0.124 0.876 49 H 0.107 0.893 50 H 0.102 0.898 51 H 0.094 0.906 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.127 -19.645 -1.183 19.712 hybrid contribution -0.236 0.137 -1.028 1.063 sum -1.364 -19.508 -2.210 19.680 Atomic orbital electron populations 1.22269 0.93610 1.04081 1.01806 1.20139 0.94735 0.91622 0.82252 1.20880 0.96899 0.87860 0.91416 1.42717 1.62237 1.11255 1.23614 1.19025 1.26688 0.85806 1.05913 0.89349 1.24709 1.00401 0.95808 0.98333 1.69713 1.49766 1.09784 1.28933 0.86774 0.81139 0.80594 0.81248 1.21366 1.22253 1.17802 1.46163 1.45229 1.17044 1.27389 1.19321 0.82077 0.81218 0.83577 1.90237 1.29909 1.69665 1.50995 1.22589 1.05370 1.01707 0.89480 0.84896 1.23379 0.95068 1.00469 1.01044 1.20135 0.92395 0.97889 0.95229 1.21334 1.02143 0.94898 0.98279 1.18903 0.93998 0.95361 0.98045 1.21063 0.92560 0.99738 0.98153 1.21060 0.98687 0.95180 0.98665 1.21146 0.98302 0.97666 0.96769 1.21037 0.93727 0.98735 0.99688 1.20869 0.98221 0.94186 0.98460 1.22597 1.05082 0.90768 0.99175 1.22897 0.94226 1.02778 1.01854 1.24064 0.97981 0.98783 1.02402 0.92642 0.89289 0.92509 0.95035 0.94098 0.80091 0.93223 0.76026 0.87740 0.87436 0.91740 0.91581 0.91904 0.85475 0.86296 0.86426 0.86690 0.86311 0.87640 0.89271 0.89826 0.90604 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 7.82 37.16 0.29 -2.42 16 2 C 0.20 3.16 0.72 -131.82 -0.09 3.07 16 3 C 0.16 2.98 5.11 -4.04 -0.02 2.96 16 4 N -0.75 -17.12 4.94 -59.91 -0.30 -17.41 16 5 C -0.24 -6.77 10.47 -15.06 -0.16 -6.93 16 6 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 7 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 8 N -0.93 -29.21 13.97 55.49 0.78 -28.43 16 9 Si 0.87 21.39 25.12 -169.99 -4.27 17.12 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 11 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.25 -5.55 4.35 56.52 0.25 -5.31 16 13 N -0.71 -10.44 4.00 -47.61 -0.19 -10.63 16 14 C 0.55 7.62 3.01 -10.99 -0.03 7.58 16 15 O -0.53 -8.11 9.17 5.56 0.05 -8.06 16 16 C -0.17 -1.93 5.96 -91.77 -0.55 -2.47 16 17 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 18 C -0.16 -1.71 9.02 -26.69 -0.24 -1.95 16 19 C -0.06 -0.62 2.17 -155.62 -0.34 -0.96 16 20 C -0.11 -0.97 9.84 37.15 0.37 -0.60 16 21 C -0.06 -0.87 4.43 -104.62 -0.46 -1.33 16 22 C -0.10 -1.39 8.24 -39.58 -0.33 -1.72 16 23 C -0.12 -1.71 10.05 -39.58 -0.40 -2.10 16 24 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 25 C -0.11 -1.80 6.91 -39.58 -0.27 -2.07 16 26 C -0.10 -1.47 8.77 -39.58 -0.35 -1.82 16 27 C -0.16 -2.24 5.28 -90.63 -0.48 -2.72 16 28 C -0.18 -2.38 9.54 -26.70 -0.25 -2.64 16 29 C -0.20 -2.71 9.12 -26.70 -0.24 -2.95 16 30 H 0.05 1.06 6.86 -51.93 -0.36 0.70 16 31 H 0.09 1.49 4.81 -51.93 -0.25 1.24 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.36 8.23 4.21 -40.82 -0.17 8.06 16 36 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 37 H 0.40 6.07 6.69 -40.82 -0.27 5.80 16 38 H 0.10 1.28 6.81 -51.93 -0.35 0.93 16 39 H 0.11 0.88 8.05 -51.93 -0.42 0.46 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 42 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 43 H 0.13 1.82 6.96 -52.49 -0.37 1.45 16 44 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 45 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 46 H 0.12 1.78 7.24 -52.49 -0.38 1.40 16 47 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 48 H 0.11 1.46 8.05 -51.93 -0.42 1.04 16 49 H 0.09 1.19 5.53 -51.93 -0.29 0.91 16 50 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 52 H 0.15 2.27 3.88 -54.65 -0.21 2.06 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -31.12 390.38 -10.36 -41.48 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -8.26 Total: 21.38 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -4.05 Total: -21.33 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.29 Total: -56.48 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.05 Total: -8.06 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.27 Total: 17.12 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.12 -10.36 -41.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267856197.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.309 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds