Wall clock time and date at job start Wed Apr 1 2020 02:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 110.78138 * 2 1 4 4 N 1.46498 * 109.46805 * 56.76013 * 3 2 1 5 5 C 1.36944 * 119.99656 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99881 * 0.02562 * 5 4 3 7 7 C 1.38811 * 120.00060 * 180.02562 * 5 4 3 8 8 N 1.31619 * 119.99760 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99968 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47121 * 60.00188 * 9 7 5 11 11 H 1.48507 * 109.47074 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47018 * 299.99583 * 9 7 5 13 13 C 1.55153 * 110.71985 * 123.24049 * 2 1 3 14 14 C 1.55132 * 101.48662 * 82.69291 * 13 2 1 15 15 N 1.47424 * 104.71791 * 37.29637 * 14 13 2 16 16 C 1.34775 * 125.64432 * 155.81737 * 15 14 13 17 17 O 1.21278 * 120.00221 * 179.68659 * 16 15 14 18 18 C 1.50706 * 120.00192 * 359.69362 * 16 15 14 19 19 C 1.50703 * 109.47338 * 180.02562 * 18 16 15 20 20 C 1.38253 * 120.02940 * 269.99733 * 19 18 16 21 21 C 1.38098 * 119.93443 * 180.02562 * 20 19 18 22 22 C 1.38496 * 120.21641 * 359.97438 * 21 20 19 23 23 C 1.38217 * 119.85036 * 359.97438 * 22 21 20 24 24 C 1.38103 * 120.03552 * 89.99430 * 19 18 16 25 25 C 1.51370 * 109.75996 * 180.02562 * 23 22 21 26 26 C 1.54347 * 105.17059 * 342.81534 * 25 23 22 27 27 C 1.51365 * 130.39098 * 180.02562 * 22 21 20 28 28 C 1.47018 * 108.70425 * 335.55150 * 15 14 13 29 29 H 1.08995 * 109.47078 * 183.23983 * 1 2 3 30 30 H 1.09005 * 109.47013 * 303.24205 * 1 2 3 31 31 H 1.09006 * 109.47114 * 63.23272 * 1 2 3 32 32 H 1.08991 * 109.47100 * 176.76286 * 3 2 1 33 33 H 1.09007 * 109.46903 * 296.76297 * 3 2 1 34 34 H 0.96998 * 120.00778 * 0.02562 * 4 3 2 35 35 H 0.97001 * 119.99689 * 179.97438 * 8 7 5 36 36 H 1.09004 * 111.00343 * 200.93459 * 13 2 1 37 37 H 1.09002 * 111.00332 * 324.74769 * 13 2 1 38 38 H 1.09000 * 110.49619 * 278.45489 * 14 13 2 39 39 H 1.08995 * 110.33715 * 156.05858 * 14 13 2 40 40 H 1.08998 * 109.46957 * 59.99491 * 18 16 15 41 41 H 1.09004 * 109.46511 * 299.99383 * 18 16 15 42 42 H 1.07999 * 120.03227 * 0.02562 * 20 19 18 43 43 H 1.08001 * 119.89079 * 179.97438 * 21 20 19 44 44 H 1.08000 * 119.88826 * 0.25900 * 24 19 18 45 45 H 1.08996 * 110.30484 * 101.74049 * 25 23 22 46 46 H 1.09007 * 110.30038 * 223.89236 * 25 23 22 47 47 H 1.09004 * 110.82025 * 268.12477 * 26 25 23 48 48 H 1.08993 * 110.99045 * 144.64981 * 26 25 23 49 49 H 1.09004 * 110.30295 * 316.08808 * 27 22 21 50 50 H 1.08998 * 110.30963 * 78.24510 * 27 22 21 51 51 H 1.09003 * 109.88388 * 120.71057 * 28 15 14 52 52 H 1.09004 * 109.87986 * 241.86777 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 7 1.5383 2.1556 1.1552 5 6 1.8873 3.4632 1.3642 6 1 2.5564 3.9600 0.6772 7 6 1.3812 4.1502 2.4591 8 7 0.5655 3.5449 3.2961 9 14 1.8579 5.9337 2.7446 10 1 1.4336 6.7519 1.5803 11 1 1.1880 6.4348 3.9716 12 1 3.3305 6.0322 2.9087 13 6 2.0790 -0.7955 1.2137 14 6 2.0074 -2.2525 0.6861 15 7 2.3715 -2.1531 -0.7390 16 6 2.8849 -3.1477 -1.4898 17 8 3.1429 -2.9539 -2.6588 18 6 3.1381 -4.5009 -0.8766 19 6 3.7102 -5.4260 -1.9197 20 6 2.8667 -6.1945 -2.7003 21 6 3.3931 -7.0420 -3.6552 22 6 4.7639 -7.1246 -3.8343 23 6 5.6071 -6.3555 -3.0547 24 6 5.0774 -5.5069 -2.0969 25 6 7.0463 -6.6231 -3.4400 26 6 7.0134 -7.9498 -4.2281 27 6 5.5786 -7.9614 -4.7972 28 6 2.0760 -0.7911 -1.2072 29 1 -0.3633 -1.0260 0.0581 30 1 -0.3633 0.5634 0.8595 31 1 -0.3634 0.4629 -0.9176 32 1 3.1610 1.4062 0.0580 33 1 1.7691 1.9344 -0.9176 34 1 0.9371 1.7096 1.7721 35 1 0.2121 4.0249 4.0614 36 1 3.1062 -0.5073 1.4374 37 1 1.4399 -0.6657 2.0872 38 1 0.9973 -2.6479 0.7928 39 1 2.7207 -2.8831 1.2168 40 1 2.2005 -4.9110 -0.5015 41 1 3.8458 -4.4001 -0.0536 42 1 1.7972 -6.1322 -2.5634 43 1 2.7335 -7.6423 -4.2643 44 1 5.7358 -4.9093 -1.4839 45 1 7.4251 -5.8183 -4.0699 46 1 7.6634 -6.7284 -2.5477 47 1 7.1738 -8.7990 -3.5639 48 1 7.7491 -7.9445 -5.0323 49 1 5.1936 -8.9805 -4.8318 50 1 5.5629 -7.5163 -5.7921 51 1 2.9868 -0.3206 -1.5776 52 1 1.3262 -0.8255 -1.9978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270840510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:09 Heat of formation + Delta-G solvation = -10.331706 kcal Electronic energy + Delta-G solvation = -29128.184446 eV Core-core repulsion = 25284.771613 eV Total energy + Delta-G solvation = -3843.412834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.60111 -39.94766 -38.12644 -36.11881 -34.83063 -32.81566 -32.17688 -30.84420 -30.22914 -29.35206 -28.17662 -27.15506 -26.22287 -25.09300 -23.11284 -22.70262 -22.40296 -21.07445 -20.62575 -19.18175 -18.68022 -17.30032 -16.80192 -16.44140 -16.35151 -15.92034 -15.35863 -15.20940 -14.92848 -14.53576 -14.12238 -13.94957 -13.91987 -13.43757 -13.35713 -13.16025 -13.12827 -12.94197 -12.75487 -12.47749 -12.39434 -12.15712 -12.06240 -11.91521 -11.65707 -11.51833 -11.50320 -11.43384 -11.13532 -11.02838 -10.93039 -10.81969 -10.58542 -10.34396 -10.27037 -9.99836 -9.83418 -9.64769 -8.90393 -8.88154 -8.58563 -8.55575 -6.93003 -5.78274 -3.06178 1.13865 1.25975 2.64474 2.98600 3.43666 3.48192 3.48995 3.59483 4.10205 4.28581 4.44990 4.52840 4.61314 4.66327 4.70522 4.74968 4.82307 4.94162 4.96197 5.07499 5.16586 5.25313 5.30672 5.31247 5.36139 5.39213 5.40169 5.47778 5.49357 5.52586 5.58573 5.61411 5.72074 5.82145 5.87995 5.90786 5.99945 6.01261 6.05955 6.09265 6.22766 6.23677 6.33145 6.40423 6.42021 6.46116 6.46641 6.65526 6.76112 6.83757 6.84400 7.55251 7.69248 8.18604 8.41160 9.52678 10.09636 10.45001 11.44593 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.027190 B = 0.001794 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.531621 B =15600.052974 C =16033.958426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.078 4.078 3 C 0.168 3.832 4 N -0.728 5.728 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.116 4.116 14 C 0.096 3.904 15 N -0.616 5.616 16 C 0.527 3.473 17 O -0.536 6.536 18 C -0.097 4.097 19 C -0.062 4.062 20 C -0.104 4.104 21 C -0.106 4.106 22 C -0.101 4.101 23 C -0.097 4.097 24 C -0.091 4.091 25 C -0.083 4.083 26 C -0.120 4.120 27 C -0.082 4.082 28 C 0.119 3.881 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.079 0.921 51 H 0.069 0.931 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.361 -26.173 -10.670 29.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.079 4.079 3 C 0.040 3.960 4 N -0.373 5.373 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.583 5.583 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.154 4.154 14 C -0.027 4.027 15 N -0.350 5.350 16 C 0.315 3.685 17 O -0.413 6.413 18 C -0.136 4.136 19 C -0.063 4.063 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.101 4.101 23 C -0.097 4.097 24 C -0.109 4.109 25 C -0.120 4.120 26 C -0.158 4.158 27 C -0.119 4.119 28 C -0.003 4.003 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.097 0.903 51 H 0.087 0.913 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.604 -25.966 -11.363 29.345 hybrid contribution -0.108 1.048 0.513 1.172 sum 7.497 -24.918 -10.850 28.192 Atomic orbital electron populations 1.21763 0.93314 1.00713 1.03166 1.21797 0.96441 0.96198 0.93425 1.20593 0.95654 0.87949 0.91766 1.42328 1.56799 1.10744 1.27407 1.19188 1.22874 0.87950 1.06994 0.91291 1.24710 1.00065 0.98308 0.97821 1.69638 1.36210 1.36383 1.16066 0.86269 0.77807 0.84977 0.77135 1.21310 1.21715 1.21323 1.22864 1.02803 0.91738 0.98036 1.22511 1.00231 0.99175 0.80744 1.48552 1.62955 1.11792 1.11725 1.20139 0.77169 0.85034 0.86125 1.90726 1.51641 1.82619 1.16282 1.20635 1.03287 0.91836 0.97883 1.19137 0.93206 0.96656 0.97288 1.20841 0.99318 0.96313 0.95743 1.20525 0.93767 0.99569 0.98573 1.20559 0.93450 0.98527 0.97606 1.20494 0.95889 0.97045 0.96316 1.20413 0.94263 0.98125 0.98113 1.21045 0.92925 0.97769 1.00214 1.22290 0.96419 0.97428 0.99632 1.21042 0.93914 0.99155 0.97773 1.22024 1.00443 0.81070 0.96791 0.93529 0.90790 0.92664 0.96102 0.96069 0.78061 0.93502 0.90245 0.89256 0.91209 0.90822 0.88008 0.88017 0.86071 0.86345 0.86448 0.90209 0.90770 0.91017 0.90601 0.90867 0.90306 0.91299 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.28 37.16 0.31 -1.69 16 2 C -0.08 -1.20 0.61 -152.68 -0.09 -1.29 16 3 C 0.17 3.29 5.08 -4.04 -0.02 3.27 16 4 N -0.73 -17.61 5.16 -59.91 -0.31 -17.92 16 5 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 9 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C -0.12 -1.61 5.73 -24.46 -0.14 -1.75 16 14 C 0.10 1.05 6.38 -2.41 -0.02 1.03 16 15 N -0.62 -8.10 3.32 -170.39 -0.57 -8.66 16 16 C 0.53 7.23 7.84 -10.98 -0.09 7.15 16 17 O -0.54 -9.52 16.36 5.56 0.09 -9.43 16 18 C -0.10 -0.96 4.83 -29.03 -0.14 -1.10 16 19 C -0.06 -0.70 4.37 -104.66 -0.46 -1.16 16 20 C -0.10 -1.12 9.70 -39.63 -0.38 -1.50 16 21 C -0.11 -1.08 10.04 -39.54 -0.40 -1.47 16 22 C -0.10 -1.02 6.14 -104.21 -0.64 -1.66 16 23 C -0.10 -1.03 6.14 -104.21 -0.64 -1.67 16 24 C -0.09 -1.02 9.70 -39.54 -0.38 -1.41 16 25 C -0.08 -0.65 6.77 -26.85 -0.18 -0.84 16 26 C -0.12 -0.76 7.08 -25.31 -0.18 -0.94 16 27 C -0.08 -0.60 6.77 -26.84 -0.18 -0.79 16 28 C 0.12 1.76 6.04 -3.07 -0.02 1.74 16 29 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 30 H 0.07 1.28 6.69 -51.93 -0.35 0.93 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 33 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.38 9.59 6.21 -40.82 -0.25 9.34 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.08 1.17 8.02 -51.93 -0.42 0.76 16 37 H 0.09 1.27 8.04 -51.93 -0.42 0.86 16 38 H 0.07 0.68 7.67 -51.93 -0.40 0.28 16 39 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 40 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 41 H 0.10 0.82 7.80 -51.93 -0.40 0.41 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.07 1.08 7.82 -51.93 -0.41 0.67 16 52 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 LS Contribution 412.37 15.07 6.21 6.21 Total: -1.00 -32.96 412.37 -11.63 -44.59 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -8.86 Total: 6.04 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -3.90 Total: -11.24 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.15 Total: -53.36 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.96 -11.63 -44.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270840510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.256 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds