Wall clock time and date at job start Wed Apr 1 2020 02:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 110.80029 * 2 1 4 4 N 1.46498 * 109.47179 * 298.16279 * 3 2 1 5 5 C 1.36936 * 120.00173 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99988 * 0.02562 * 5 4 3 7 7 C 1.38808 * 119.99784 * 179.97438 * 5 4 3 8 8 N 1.31622 * 119.99880 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00544 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46906 * 89.99572 * 9 7 5 11 11 H 1.48492 * 109.47542 * 209.99691 * 9 7 5 12 12 H 1.48493 * 109.46895 * 329.99915 * 9 7 5 13 13 C 1.54616 * 110.74248 * 236.70795 * 2 1 3 14 14 C 1.54005 * 105.04550 * 263.51477 * 13 2 1 15 15 N 1.47485 * 107.24392 * 1.20635 * 14 13 2 16 16 C 1.34777 * 127.02912 * 154.61510 * 15 14 13 17 17 O 1.21282 * 119.99748 * 180.02562 * 16 15 14 18 18 C 1.50705 * 120.00262 * 0.02562 * 16 15 14 19 19 C 1.50707 * 109.46996 * 180.02562 * 18 16 15 20 20 C 1.38257 * 120.02553 * 269.72487 * 19 18 16 21 21 C 1.38105 * 119.92769 * 179.70142 * 20 19 18 22 22 C 1.38499 * 120.21515 * 0.59343 * 21 20 19 23 23 C 1.38213 * 119.85033 * 359.68601 * 22 21 20 24 24 C 1.38091 * 120.03304 * 90.00181 * 19 18 16 25 25 C 1.51372 * 109.75934 * 180.02562 * 23 22 21 26 26 C 1.54350 * 105.16840 * 342.81483 * 25 23 22 27 27 C 1.51373 * 130.38883 * 179.71123 * 22 21 20 28 28 C 1.48377 * 105.79701 * 334.78511 * 15 14 13 29 29 H 1.09004 * 109.47093 * 181.83566 * 1 2 3 30 30 H 1.08997 * 109.47365 * 301.84028 * 1 2 3 31 31 H 1.09002 * 109.46779 * 61.84281 * 1 2 3 32 32 H 1.09004 * 109.47095 * 58.15800 * 3 2 1 33 33 H 1.08996 * 109.47379 * 178.15777 * 3 2 1 34 34 H 0.97008 * 119.99999 * 359.97438 * 4 3 2 35 35 H 0.97004 * 120.00622 * 180.02562 * 8 7 5 36 36 H 1.08993 * 110.33033 * 144.62123 * 13 2 1 37 37 H 1.09001 * 110.32669 * 22.40280 * 13 2 1 38 38 H 1.09002 * 109.91501 * 120.66612 * 14 13 2 39 39 H 1.08999 * 109.90987 * 241.75223 * 14 13 2 40 40 H 1.08996 * 109.47029 * 299.99935 * 18 16 15 41 41 H 1.08995 * 109.46894 * 60.00354 * 18 16 15 42 42 H 1.07996 * 120.03902 * 359.97438 * 20 19 18 43 43 H 1.08000 * 119.89349 * 180.29724 * 21 20 19 44 44 H 1.08004 * 119.89588 * 0.02562 * 24 19 18 45 45 H 1.08999 * 110.30043 * 101.73632 * 25 23 22 46 46 H 1.09000 * 110.30570 * 223.89253 * 25 23 22 47 47 H 1.08996 * 110.82218 * 268.11902 * 26 25 23 48 48 H 1.08999 * 110.99083 * 144.64546 * 26 25 23 49 49 H 1.09005 * 110.30234 * 316.09233 * 27 22 21 50 50 H 1.08994 * 110.30362 * 78.24194 * 27 22 21 51 51 H 1.09005 * 110.51886 * 280.62106 * 28 15 14 52 52 H 1.09006 * 110.83140 * 157.65823 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0733 1.4303 0.0000 4 7 1.6373 2.1183 -1.2177 5 6 2.0046 3.4189 -1.4380 6 1 2.6160 3.9374 -0.7144 7 6 1.5919 4.0706 -2.5921 8 7 1.9444 5.3209 -2.8037 9 14 0.5350 3.1736 -3.8442 10 1 -0.8993 3.3742 -3.5156 11 1 0.8117 3.7103 -5.2008 12 1 0.8521 1.7233 -3.8114 13 6 2.0776 -0.7937 -1.2086 14 6 2.3763 -2.2015 -0.6603 15 7 1.9905 -2.2071 0.7632 16 6 1.6290 -3.2749 1.5019 17 8 1.3343 -3.1325 2.6698 18 6 1.5911 -4.6457 0.8769 19 6 1.1585 -5.6561 1.9080 20 6 2.1035 -6.2971 2.6875 21 6 1.7044 -7.2182 3.6360 22 6 0.3608 -7.5112 3.8009 23 6 -0.5834 -6.8746 3.0176 24 6 -0.1816 -5.9467 2.0711 25 6 -1.9679 -7.3626 3.3869 26 6 -1.7389 -8.6745 4.1672 27 6 -0.3245 -8.4708 4.7502 28 6 2.0787 -0.7954 1.2112 29 1 -0.3633 -1.0272 0.0329 30 1 -0.3634 0.5421 0.8730 31 1 -0.3633 0.4850 -0.9061 32 1 1.6955 1.9625 0.8730 33 1 3.1625 1.4052 0.0330 34 1 1.0885 1.6525 -1.8679 35 1 1.6558 5.7766 -3.6099 36 1 2.9910 -0.3315 -1.5828 37 1 1.3280 -0.8461 -1.9982 38 1 1.7937 -2.9438 -1.2058 39 1 3.4398 -2.4198 -0.7576 40 1 0.8836 -4.6475 0.0478 41 1 2.5837 -4.9044 0.5083 42 1 3.1523 -6.0746 2.5579 43 1 2.4427 -7.7150 4.2479 44 1 -0.9188 -5.4491 1.4584 45 1 -2.4712 -6.6301 4.0180 46 1 -2.5536 -7.5545 2.4879 47 1 -1.7613 -9.5333 3.4963 48 1 -2.4738 -8.7882 4.9641 49 1 0.2120 -9.4191 4.7819 50 1 -0.3858 -8.0365 5.7480 51 1 3.1145 -0.5226 1.4132 52 1 1.4596 -0.6291 2.0929 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270840521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:14 Heat of formation + Delta-G solvation = -5.159176 kcal Electronic energy + Delta-G solvation = -29340.756283 eV Core-core repulsion = 25497.567747 eV Total energy + Delta-G solvation = -3843.188536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.64131 -39.99262 -38.19929 -36.16044 -34.98730 -32.82644 -32.21012 -30.96330 -30.50329 -29.62674 -28.23946 -27.25675 -26.40454 -25.24960 -23.18583 -22.76651 -22.06924 -21.10762 -20.64702 -19.34866 -18.77149 -17.71282 -17.01681 -16.52217 -16.21732 -15.85925 -15.56137 -15.28424 -14.82987 -14.67736 -14.35559 -13.95930 -13.89657 -13.62731 -13.47251 -13.24878 -13.15775 -13.00559 -12.76192 -12.64274 -12.47642 -12.23691 -12.22108 -11.96787 -11.77464 -11.55183 -11.48697 -11.43954 -11.41133 -11.17209 -10.96909 -10.90961 -10.57715 -10.51697 -10.39112 -10.08599 -9.89905 -9.59520 -8.94488 -8.92203 -8.70374 -8.59711 -7.24730 -5.78483 -3.13866 1.09584 1.21869 2.57085 2.87919 3.33087 3.36258 3.42537 3.54584 4.06526 4.25214 4.38365 4.48059 4.56445 4.63399 4.63660 4.69061 4.77729 4.82688 4.90058 4.96128 5.10240 5.17211 5.20878 5.26000 5.31491 5.32946 5.36411 5.41570 5.44889 5.47602 5.52624 5.57922 5.62951 5.69233 5.79179 5.81434 5.84266 5.85478 5.92754 5.97105 6.04784 6.14713 6.19542 6.27144 6.37334 6.39092 6.42771 6.44426 6.63422 6.70781 6.80044 7.50036 7.97892 8.10582 8.40485 9.19584 9.91687 10.11746 11.39980 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.026261 B = 0.001943 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.947297 B =14409.918404 C =14740.903358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.083 4.083 3 C 0.173 3.827 4 N -0.752 5.752 5 C -0.243 4.243 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.124 4.124 14 C 0.100 3.900 15 N -0.620 5.620 16 C 0.533 3.467 17 O -0.534 6.534 18 C -0.097 4.097 19 C -0.063 4.063 20 C -0.104 4.104 21 C -0.106 4.106 22 C -0.101 4.101 23 C -0.097 4.097 24 C -0.091 4.091 25 C -0.083 4.083 26 C -0.120 4.120 27 C -0.082 4.082 28 C 0.117 3.883 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.031 0.969 33 H 0.030 0.970 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.079 0.921 51 H 0.075 0.925 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 -30.837 10.175 32.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.084 4.084 3 C 0.045 3.955 4 N -0.398 5.398 5 C -0.373 4.373 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.162 4.162 14 C -0.023 4.023 15 N -0.355 5.355 16 C 0.321 3.679 17 O -0.411 6.411 18 C -0.136 4.136 19 C -0.063 4.063 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.101 4.101 23 C -0.097 4.097 24 C -0.109 4.109 25 C -0.120 4.120 26 C -0.158 4.158 27 C -0.119 4.119 28 C -0.005 4.005 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.097 0.903 51 H 0.093 0.907 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.188 -30.631 10.898 32.668 hybrid contribution -0.618 -0.305 -1.185 1.371 sum -3.806 -30.936 9.713 32.648 Atomic orbital electron populations 1.21696 0.93656 1.00656 1.02597 1.21903 0.96377 0.96166 0.94004 1.20567 0.96585 0.87914 0.90419 1.42666 1.63445 1.12444 1.21237 1.19057 1.27018 0.86666 1.04519 0.89205 1.24663 1.00553 0.95893 0.98040 1.69700 1.50135 1.10376 1.27976 0.86577 0.81029 0.79167 0.81923 1.21106 1.21744 1.20360 1.22599 1.02793 0.93069 0.97768 1.22179 1.00010 0.98982 0.81110 1.48882 1.67126 1.07679 1.11779 1.20092 0.76703 0.84926 0.86141 1.90734 1.48538 1.85528 1.16283 1.20629 1.04268 0.90798 0.97942 1.19121 0.93311 0.96518 0.97393 1.20842 0.99105 0.96511 0.95777 1.20533 0.94607 0.98681 0.98587 1.20566 0.93366 0.98538 0.97610 1.20498 0.95861 0.97021 0.96328 1.20407 0.95016 0.97277 0.98235 1.21047 0.93683 0.96917 1.00317 1.22287 0.96427 0.97425 0.99635 1.21043 0.95061 0.97929 0.97869 1.22548 1.01348 0.79016 0.97636 0.93473 0.92344 0.92048 0.95155 0.95207 0.80571 0.93071 0.89443 0.90653 0.91112 0.91364 0.88075 0.87999 0.86062 0.86315 0.86483 0.90191 0.90773 0.91014 0.90574 0.90845 0.90282 0.90680 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.31 37.16 0.31 -1.58 16 2 C -0.08 -1.20 0.64 -152.63 -0.10 -1.30 16 3 C 0.17 3.16 5.09 -4.04 -0.02 3.14 16 4 N -0.75 -17.05 4.96 -59.91 -0.30 -17.34 16 5 C -0.24 -6.72 10.47 -15.06 -0.16 -6.88 16 6 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 7 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 8 N -0.93 -29.06 13.97 55.49 0.78 -28.28 16 9 Si 0.88 21.64 27.74 -169.99 -4.71 16.92 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 13 C -0.12 -1.59 5.52 -25.36 -0.14 -1.73 16 14 C 0.10 1.01 6.74 -2.98 -0.02 0.99 16 15 N -0.62 -7.54 3.23 -169.54 -0.55 -8.09 16 16 C 0.53 6.90 7.89 -10.98 -0.09 6.81 16 17 O -0.53 -9.07 16.27 5.56 0.09 -8.98 16 18 C -0.10 -0.90 4.91 -29.03 -0.14 -1.05 16 19 C -0.06 -0.68 4.37 -104.67 -0.46 -1.14 16 20 C -0.10 -1.08 9.70 -39.62 -0.38 -1.46 16 21 C -0.11 -1.04 10.04 -39.53 -0.40 -1.44 16 22 C -0.10 -0.99 6.14 -104.20 -0.64 -1.63 16 23 C -0.10 -0.99 6.14 -104.20 -0.64 -1.63 16 24 C -0.09 -0.99 9.69 -39.54 -0.38 -1.37 16 25 C -0.08 -0.63 6.77 -26.85 -0.18 -0.82 16 26 C -0.12 -0.74 7.08 -25.32 -0.18 -0.92 16 27 C -0.08 -0.58 6.77 -26.85 -0.18 -0.77 16 28 C 0.12 1.57 5.98 -1.98 -0.01 1.56 16 29 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.97 7.13 -51.93 -0.37 0.60 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.36 7.96 4.25 -40.82 -0.17 7.78 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.09 1.20 7.85 -51.93 -0.41 0.79 16 37 H 0.07 0.97 7.86 -51.93 -0.41 0.56 16 38 H 0.07 0.57 7.54 -51.93 -0.39 0.18 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.77 7.86 -51.93 -0.41 0.36 16 41 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.07 0.96 8.04 -51.93 -0.42 0.55 16 52 H 0.08 1.22 7.79 -51.93 -0.40 0.81 16 LS Contribution 411.09 15.07 6.20 6.20 Total: -1.00 -33.96 411.09 -11.32 -45.27 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -8.91 Total: 5.48 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -3.91 Total: -11.17 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.07 Total: -53.72 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.96 -11.32 -45.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270840521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.114 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds