Wall clock time and date at job start Wed Apr 1 2020 02:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 119.99939 * 2 1 4 4 C 1.38214 * 120.00300 * 180.27245 * 3 2 1 5 5 C 1.38270 * 119.99454 * 359.74514 * 4 3 2 6 6 C 1.38211 * 119.99935 * 359.97438 * 5 4 3 7 7 C 1.38214 * 120.00174 * 179.74258 * 2 1 3 8 8 C 1.50699 * 119.99724 * 0.02562 * 7 2 1 9 9 H 1.09005 * 115.56397 * 334.03409 * 8 7 2 10 10 C 1.53008 * 117.49864 * 188.34869 * 8 7 2 11 11 C 1.53004 * 59.99991 * 252.50988 * 10 8 7 12 12 H 1.09000 * 117.49734 * 107.50802 * 11 10 8 13 13 C 1.50692 * 117.49887 * 252.51241 * 11 10 8 14 14 O 1.21283 * 120.00484 * 68.60433 * 13 11 10 15 15 N 1.34784 * 119.99748 * 248.60501 * 13 11 10 16 16 C 1.47017 * 125.64909 * 0.04602 * 15 13 11 17 17 C 1.54318 * 107.27230 * 178.90166 * 16 15 13 18 18 C 1.55151 * 102.94375 * 337.80338 * 17 16 15 19 19 H 1.08998 * 111.00631 * 277.43091 * 18 17 16 20 20 C 1.53000 * 111.00550 * 153.57418 * 18 17 16 21 21 C 1.53000 * 109.47023 * 72.80830 * 20 18 17 22 22 N 1.46502 * 109.47051 * 180.02562 * 21 20 18 23 23 C 1.36939 * 119.99860 * 180.02562 * 22 21 20 24 24 H 1.08001 * 120.00147 * 359.97438 * 23 22 21 25 25 C 1.38817 * 120.00057 * 179.97438 * 23 22 21 26 26 N 1.31614 * 120.00243 * 179.97438 * 25 23 22 27 27 Si 1.86795 * 119.99824 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.47443 * 90.00218 * 27 25 23 29 29 H 1.48496 * 109.47178 * 209.99943 * 27 25 23 30 30 H 1.48504 * 109.47385 * 330.00285 * 27 25 23 31 31 C 1.47421 * 125.64598 * 179.97438 * 15 13 11 32 32 H 1.08994 * 109.47277 * 270.25729 * 1 2 3 33 33 H 1.09005 * 109.46875 * 30.25318 * 1 2 3 34 34 H 1.08998 * 109.46915 * 150.25517 * 1 2 3 35 35 H 1.08000 * 120.00633 * 0.04118 * 3 2 1 36 36 H 1.07996 * 120.00486 * 179.77219 * 4 3 2 37 37 H 1.07999 * 119.99585 * 179.97438 * 5 4 3 38 38 H 1.07993 * 119.99872 * 179.97438 * 6 5 4 39 39 H 1.08995 * 117.49813 * 145.01863 * 10 8 7 40 40 H 1.09000 * 117.49545 * 359.97438 * 10 8 7 41 41 H 1.09000 * 109.88045 * 298.31928 * 16 15 13 42 42 H 1.09004 * 109.88579 * 59.32785 * 16 15 13 43 43 H 1.08998 * 110.72193 * 219.44087 * 17 16 15 44 44 H 1.09005 * 110.72093 * 96.16887 * 17 16 15 45 45 H 1.09005 * 109.47214 * 192.80295 * 20 18 17 46 46 H 1.08999 * 109.47132 * 312.80464 * 20 18 17 47 47 H 1.08996 * 109.46900 * 299.99826 * 21 20 18 48 48 H 1.08999 * 109.47466 * 59.99838 * 21 20 18 49 49 H 0.96999 * 120.00297 * 359.97438 * 22 21 20 50 50 H 0.97002 * 120.00393 * 179.97438 * 26 25 23 51 51 H 1.09001 * 110.36853 * 85.33281 * 31 15 13 52 52 H 1.09003 * 110.37387 * 323.00289 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0057 5 6 4.2717 -0.0001 -0.0061 6 6 3.5806 -1.1970 -0.0002 7 6 2.1981 -1.1969 0.0054 8 6 1.4446 -2.5020 0.0107 9 1 0.4436 -2.4655 0.4407 10 6 2.2542 -3.7844 0.2135 11 6 1.6746 -3.4554 -1.1638 12 1 2.3710 -3.1389 -1.9403 13 6 0.5000 -4.2718 -1.6375 14 8 -0.5769 -4.1591 -1.0910 15 7 0.6460 -5.1274 -2.6686 16 6 1.8892 -5.3625 -3.4175 17 6 1.5866 -6.4383 -4.4817 18 6 0.3398 -7.1582 -3.9033 19 1 0.6283 -7.9088 -3.1675 20 6 -0.5002 -7.7822 -5.0195 21 6 0.2210 -9.0125 -5.5736 22 7 -0.5831 -9.6096 -6.6428 23 6 -0.1360 -10.7295 -7.2917 24 1 0.8095 -11.1724 -7.0155 25 6 -0.8981 -11.2957 -8.3045 26 7 -0.4682 -12.3718 -8.9285 27 14 -2.5338 -10.5301 -8.7817 28 1 -2.3155 -9.5211 -9.8492 29 1 -3.4488 -11.5880 -9.2802 30 1 -3.1375 -9.8723 -7.5950 31 6 -0.4140 -5.9836 -3.2314 32 1 -0.3633 0.0046 1.0276 33 1 -0.3633 0.8878 -0.5178 34 1 -0.3633 -0.8923 -0.5099 35 1 1.6584 2.1327 0.0007 36 1 4.1204 2.1327 -0.0094 37 1 5.3517 0.0000 -0.0109 38 1 4.1206 -2.1322 -0.0009 39 1 1.7858 -4.5914 0.7769 40 1 3.3318 -3.6841 0.3427 41 1 2.2094 -4.4406 -3.9030 42 1 2.6682 -5.7152 -2.7416 43 1 2.4222 -7.1315 -4.5777 44 1 1.3547 -5.9768 -5.4416 45 1 -1.4708 -8.0786 -4.6215 46 1 -0.6420 -7.0538 -5.8179 47 1 1.1915 -8.7161 -5.9716 48 1 0.3628 -9.7408 -4.7752 49 1 -1.4324 -9.2121 -6.8906 50 1 -1.0009 -12.7676 -9.6359 51 1 -0.9939 -5.4324 -3.9716 52 1 -1.0636 -6.3540 -2.4383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272591721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:56 Heat of formation + Delta-G solvation = -0.039766 kcal Electronic energy + Delta-G solvation = -28519.967687 eV Core-core repulsion = 24677.001145 eV Total energy + Delta-G solvation = -3842.966542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.55525 -40.50692 -39.11295 -37.28268 -36.93422 -34.56205 -33.73413 -32.98862 -31.51413 -30.69285 -29.32811 -27.80836 -26.29739 -24.94901 -24.66117 -23.58104 -22.91885 -22.32849 -21.34293 -21.12282 -20.03443 -19.59741 -18.56246 -17.49730 -17.18974 -16.81028 -16.60094 -16.20503 -15.87148 -15.76372 -15.72590 -15.26674 -14.95673 -14.77612 -14.72437 -14.45656 -14.23014 -14.09499 -13.93276 -13.61871 -13.41045 -13.20065 -13.18486 -13.07309 -12.93090 -12.83198 -12.80713 -12.44055 -12.11130 -12.04863 -11.93216 -11.86377 -11.74430 -11.60530 -11.56964 -11.51811 -11.42668 -10.98715 -10.94628 -9.71574 -9.66372 -9.39118 -9.28645 -8.02787 -5.36169 0.36314 0.49141 1.38467 1.39898 1.41644 1.49157 1.87493 2.48684 2.64776 3.05456 3.28225 3.29602 3.48295 3.60534 3.66819 3.72408 3.82203 3.92939 3.98560 4.01293 4.08974 4.19725 4.24994 4.30915 4.33967 4.44228 4.44744 4.53716 4.60314 4.64545 4.72030 4.74222 4.75407 4.77549 4.82943 4.87150 4.89337 4.96299 4.97448 5.09979 5.11200 5.18009 5.20991 5.29334 5.31185 5.36538 5.44921 5.60949 5.64385 5.75572 5.76294 6.13162 6.21490 6.45320 7.05112 7.08594 7.85666 8.03824 9.18637 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025796 B = 0.001636 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.158162 B =17106.145673 C =17422.189717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C -0.130 4.130 4 C -0.125 4.125 5 C -0.129 4.129 6 C -0.120 4.120 7 C -0.067 4.067 8 C -0.089 4.089 9 H 0.107 0.893 10 C -0.127 4.127 11 C -0.172 4.172 12 H 0.142 0.858 13 C 0.551 3.449 14 O -0.587 6.587 15 N -0.614 5.614 16 C 0.101 3.899 17 C -0.125 4.125 18 C -0.085 4.085 19 H 0.088 0.912 20 C -0.107 4.107 21 C 0.155 3.845 22 N -0.762 5.762 23 C -0.237 4.237 24 H 0.057 0.943 25 C -0.065 4.065 26 N -0.984 5.984 27 Si 0.956 3.044 28 H -0.276 1.276 29 H -0.296 1.296 30 H -0.252 1.252 31 C 0.110 3.890 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.099 0.901 40 H 0.136 0.864 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.033 0.967 48 H 0.021 0.979 49 H 0.365 0.635 50 H 0.258 0.742 51 H 0.069 0.931 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.479 30.388 21.661 38.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.138 4.138 7 C -0.067 4.067 8 C -0.108 4.108 9 H 0.125 0.875 10 C -0.164 4.164 11 C -0.193 4.193 12 H 0.160 0.840 13 C 0.341 3.659 14 O -0.468 6.468 15 N -0.346 5.346 16 C -0.021 4.021 17 C -0.163 4.163 18 C -0.105 4.105 19 H 0.106 0.894 20 C -0.145 4.145 21 C 0.029 3.971 22 N -0.408 5.408 23 C -0.368 4.368 24 H 0.075 0.925 25 C -0.257 4.257 26 N -0.634 5.634 27 Si 0.784 3.216 28 H -0.202 1.202 29 H -0.223 1.223 30 H -0.177 1.177 31 C -0.013 4.013 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.117 0.883 40 H 0.154 0.846 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.114 0.886 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.039 0.961 49 H 0.198 0.802 50 H 0.067 0.933 51 H 0.087 0.913 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.069 30.338 21.968 38.786 hybrid contribution -1.287 -0.289 -0.758 1.521 sum 8.782 30.049 21.209 37.814 Atomic orbital electron populations 1.20833 0.91135 1.02809 1.02650 1.19955 0.96499 0.93022 0.99851 1.21271 0.94943 0.97593 1.00974 1.21473 0.94194 0.99216 0.99431 1.21436 1.01074 0.92158 1.00031 1.21285 0.92989 0.99520 0.99977 1.19036 0.93678 0.92244 1.01785 1.20989 1.00465 0.88911 1.00435 0.87510 1.23253 1.01639 0.97586 0.93882 1.22278 0.99279 1.03107 0.94641 0.84004 1.19818 0.88999 0.78880 0.78210 1.90678 1.29864 1.68286 1.58001 1.48511 1.13329 1.40430 1.32362 1.22269 0.85931 0.99853 0.94015 1.22768 0.98233 0.97147 0.98169 1.22163 0.95561 0.95814 0.96942 0.89374 1.21568 0.98808 0.96587 0.97555 1.20793 0.94092 0.93083 0.89103 1.42780 1.23477 1.31934 1.42625 1.19072 1.03340 1.02402 1.11962 0.92490 1.25537 1.02775 0.98303 0.99067 1.69885 1.40847 1.24604 1.28097 0.85386 0.79865 0.77614 0.78782 1.20246 1.22326 1.17673 1.22253 0.90648 0.90984 0.97391 0.90700 0.90634 0.92520 0.84773 0.84155 0.83905 0.84028 0.88285 0.84624 0.89664 0.89260 0.88581 0.90061 0.91751 0.90932 0.94853 0.96136 0.80150 0.93348 0.91307 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 9.33 71.24 0.66 -1.12 16 2 C -0.09 -1.49 5.88 -19.87 -0.12 -1.60 16 3 C -0.13 -1.73 9.70 22.27 0.22 -1.51 16 4 C -0.13 -1.40 10.05 22.27 0.22 -1.18 16 5 C -0.13 -1.38 10.05 22.27 0.22 -1.15 16 6 C -0.12 -1.43 9.30 22.27 0.21 -1.22 16 7 C -0.07 -1.04 5.61 -19.87 -0.11 -1.15 16 8 C -0.09 -1.49 4.65 -11.54 -0.05 -1.54 16 9 H 0.11 2.23 6.44 -2.38 -0.02 2.22 16 10 C -0.13 -1.58 9.56 30.60 0.29 -1.29 16 11 C -0.17 -2.74 5.17 -11.54 -0.06 -2.80 16 12 H 0.14 1.72 7.74 -2.39 -0.02 1.71 16 13 C 0.55 12.79 7.63 87.65 0.67 13.45 16 14 O -0.59 -18.51 16.51 -3.04 -0.05 -18.57 16 15 N -0.61 -12.47 3.33 -811.83 -2.70 -15.17 16 16 C 0.10 1.40 6.28 86.73 0.54 1.95 16 17 C -0.13 -2.05 5.90 31.78 0.19 -1.86 16 18 C -0.09 -1.75 3.00 -9.41 -0.03 -1.78 16 19 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 20 C -0.11 -2.80 4.84 30.59 0.15 -2.65 16 21 C 0.16 5.51 6.16 86.38 0.53 6.04 16 22 N -0.76 -35.24 5.41 -343.45 -1.86 -37.10 16 23 C -0.24 -13.55 10.47 84.03 0.88 -12.67 16 24 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 25 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 26 N -0.98 -63.22 13.97 21.65 0.30 -62.92 16 27 Si 0.96 45.46 27.73 68.60 1.90 47.36 16 28 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 29 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 30 H -0.25 -10.81 6.52 99.48 0.65 -10.16 16 31 C 0.11 2.42 6.38 86.85 0.55 2.97 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 0.94 8.09 -2.38 -0.02 0.93 16 34 H 0.06 1.05 6.65 -2.39 -0.02 1.04 16 35 H 0.13 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 37 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 38 H 0.14 1.06 6.02 -2.91 -0.02 1.04 16 39 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.14 0.94 6.18 -2.39 -0.01 0.93 16 41 H 0.09 0.93 8.06 -2.39 -0.02 0.91 16 42 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.08 1.36 7.91 -2.38 -0.02 1.34 16 45 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 46 H 0.07 1.83 7.97 -2.39 -0.02 1.81 16 47 H 0.03 1.17 7.75 -2.39 -0.02 1.15 16 48 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.37 16.07 5.53 -92.71 -0.51 15.56 16 50 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 51 H 0.07 1.53 8.04 -2.39 -0.02 1.51 16 52 H 0.06 1.60 8.04 -2.39 -0.02 1.58 16 Total: -1.00 -75.78 415.10 3.37 -72.41 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.33 Total: 26.49 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 5.44 Total: -12.52 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -4.25 Total: -115.18 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.05 Total: -18.57 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.36 kcal Total: -75.78 3.37 -72.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272591721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.371 kcal (2) G-P(sol) polarization free energy of solvation -75.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds