Wall clock time and date at job start Wed Apr 1 2020 03:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47072 * 2 1 4 4 C 1.50693 * 109.47263 * 120.00273 * 2 1 3 5 5 O 1.21279 * 119.99838 * 119.99688 * 4 2 1 6 6 N 1.34777 * 120.00167 * 299.99890 * 4 2 1 7 7 C 1.46499 * 120.00122 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.46940 * 179.97438 * 7 6 4 9 9 H 1.09004 * 109.81559 * 294.22610 * 8 7 6 10 10 C 1.52791 * 109.77780 * 173.44748 * 8 7 6 11 11 C 1.50593 * 110.85393 * 192.92208 * 10 8 7 12 12 C 1.38986 * 117.61636 * 199.69063 * 11 10 8 13 13 C 1.37913 * 120.58360 * 180.75597 * 12 11 10 14 14 C 1.38260 * 119.82336 * 359.88951 * 13 12 11 15 15 C 1.37949 * 119.71987 * 359.79390 * 14 13 12 16 16 C 1.37670 * 122.86714 * 20.02655 * 11 10 8 17 17 C 1.50812 * 122.34677 * 358.79126 * 16 11 10 18 18 N 1.46682 * 109.67608 * 11.35608 * 17 16 11 19 19 C 1.36941 * 121.33410 * 135.63187 * 18 17 16 20 20 H 1.08003 * 119.99901 * 207.02018 * 19 18 17 21 21 C 1.38807 * 120.00543 * 27.02105 * 19 18 17 22 22 N 1.31627 * 119.99856 * 11.04802 * 21 19 18 23 23 Si 1.86796 * 120.00368 * 191.05688 * 21 19 18 24 24 H 1.48500 * 109.47614 * 89.99675 * 23 21 19 25 25 H 1.48506 * 109.47167 * 209.99840 * 23 21 19 26 26 H 1.48503 * 109.47114 * 329.99478 * 23 21 19 27 27 C 1.53004 * 109.46524 * 240.00415 * 2 1 3 28 28 C 1.52997 * 117.49844 * 128.74926 * 27 2 1 29 29 C 1.52999 * 117.50333 * 60.09064 * 27 2 1 30 30 H 1.09000 * 109.46748 * 299.99977 * 1 2 3 31 31 H 1.08997 * 109.47173 * 59.99574 * 1 2 3 32 32 H 1.08998 * 109.47454 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46971 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47254 * 299.99938 * 3 2 1 35 35 H 1.09000 * 109.46801 * 60.00270 * 3 2 1 36 36 H 0.97008 * 119.99491 * 359.97438 * 6 4 2 37 37 H 1.08996 * 109.47069 * 60.00555 * 7 6 4 38 38 H 1.08998 * 109.47137 * 299.99827 * 7 6 4 39 39 H 1.09000 * 109.19821 * 313.27915 * 10 8 7 40 40 H 1.09003 * 109.20055 * 72.56764 * 10 8 7 41 41 H 1.07997 * 119.70859 * 0.76390 * 12 11 10 42 42 H 1.08000 * 120.08580 * 180.16370 * 13 12 11 43 43 H 1.08007 * 120.13848 * 179.77041 * 14 13 12 44 44 H 1.08002 * 119.75027 * 180.18304 * 15 14 13 45 45 H 1.08999 * 109.43270 * 131.41691 * 17 16 11 46 46 H 1.08996 * 109.43296 * 251.29288 * 17 16 11 47 47 H 0.96996 * 119.99774 * 179.97438 * 22 21 19 48 48 H 1.08999 * 115.54684 * 274.40763 * 27 2 1 49 49 H 1.09007 * 117.49942 * 359.97438 * 28 27 2 50 50 H 1.09000 * 117.50062 * 145.01451 * 28 27 2 51 51 H 1.08999 * 117.49267 * 214.97826 * 29 27 2 52 52 H 1.08999 * 117.49604 * 359.96714 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1190 6 7 1.7069 -0.2500 2.4545 7 6 2.1948 -0.9410 3.6506 8 6 1.6854 -0.2194 4.8999 9 1 2.1282 0.7750 4.9586 10 6 2.0519 -1.0229 6.1467 11 6 1.3046 -0.5143 7.3511 12 6 1.8109 -0.8334 8.6055 13 6 1.1668 -0.4124 9.7500 14 6 0.0082 0.3357 9.6514 15 6 -0.4930 0.6594 8.4077 16 6 0.1546 0.2364 7.2547 17 6 -0.4397 0.6353 5.9273 18 7 0.2182 -0.1089 4.8480 19 6 -0.5035 -0.6783 3.8330 20 1 -0.1180 -1.5452 3.3167 21 6 -1.7303 -0.1416 3.4676 22 7 -2.1022 1.0303 3.9377 23 14 -2.8536 -1.0823 2.3088 24 1 -3.7534 -1.9621 3.0972 25 1 -3.6667 -0.1223 1.5197 26 1 -2.0337 -1.9102 1.3882 27 6 2.0399 -0.7212 -1.2494 28 6 3.0762 0.0040 -2.1102 29 6 1.6374 -0.1482 -2.6097 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.1495 0.5389 2.5435 37 1 3.2847 -0.9414 3.6508 38 1 1.8310 -1.9685 3.6504 39 1 1.7999 -2.0709 5.9846 40 1 3.1235 -0.9364 6.3267 41 1 2.7168 -1.4160 8.6847 42 1 1.5687 -0.6627 10.7207 43 1 -0.5024 0.6648 10.5444 44 1 -1.3963 1.2463 8.3301 45 1 -1.5062 0.4105 5.9252 46 1 -0.2946 1.7043 5.7717 47 1 -2.9593 1.4055 3.6820 48 1 2.1253 -1.8046 -1.1648 49 1 3.3945 0.9951 -1.7867 50 1 3.8430 -0.6023 -2.5924 51 1 1.4581 -0.8547 -3.4202 52 1 1.0088 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273824408.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:08 Heat of formation + Delta-G solvation = 30.477472 kcal Electronic energy + Delta-G solvation = -31450.258435 eV Core-core repulsion = 27608.615219 eV Total energy + Delta-G solvation = -3841.643215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -39.99074 -39.28643 -37.51004 -36.39873 -33.79779 -33.14945 -32.47730 -31.41254 -30.11597 -28.88944 -27.22706 -25.67822 -25.50549 -24.02844 -22.84806 -22.11889 -21.57449 -21.37673 -20.45265 -19.13234 -18.29287 -16.99973 -16.28604 -16.12279 -15.76202 -15.36912 -14.84030 -14.62999 -14.46380 -14.27767 -14.26763 -13.87352 -13.63809 -13.14251 -12.99937 -12.63237 -12.58669 -12.51448 -12.38909 -12.10377 -11.95058 -11.82671 -11.66502 -11.59673 -11.35313 -11.11904 -10.95445 -10.91042 -10.77520 -10.71413 -10.55185 -10.44508 -10.20664 -10.19159 -10.00773 -9.78125 -9.71116 -9.03299 -8.79480 -8.27189 -8.19860 -7.86183 -6.85450 -5.93961 -3.37250 1.85566 1.93276 3.25530 3.30713 3.36559 3.38971 3.75707 4.06977 4.27756 4.34847 4.76717 5.00330 5.07561 5.13972 5.19951 5.22145 5.27351 5.32308 5.35435 5.43839 5.45955 5.56497 5.69637 5.71277 5.74153 5.84438 5.88435 5.92387 5.93565 6.01134 6.04816 6.09741 6.13417 6.17989 6.18987 6.22154 6.30136 6.35935 6.39690 6.52623 6.54385 6.61560 6.68008 6.80809 6.93286 6.94831 7.12825 7.16782 7.21433 7.49040 7.62896 7.70835 8.22809 8.33442 8.93600 9.05422 9.64867 10.22885 11.14902 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.003722 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.630508 B = 7521.789631 C = 8818.217540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C -0.142 4.142 4 C 0.521 3.479 5 O -0.564 6.564 6 N -0.691 5.691 7 C 0.136 3.864 8 C 0.158 3.842 9 H 0.042 0.958 10 C -0.090 4.090 11 C -0.068 4.068 12 C -0.128 4.128 13 C -0.140 4.140 14 C -0.130 4.130 15 C -0.124 4.124 16 C -0.077 4.077 17 C 0.207 3.793 18 N -0.588 5.588 19 C -0.242 4.242 20 H 0.073 0.927 21 C 0.009 3.991 22 N -0.906 5.906 23 Si 0.890 3.110 24 H -0.290 1.290 25 H -0.289 1.289 26 H -0.273 1.273 27 C -0.123 4.123 28 C -0.184 4.184 29 C -0.181 4.181 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.415 0.585 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.099 0.901 46 H 0.042 0.958 47 H 0.255 0.745 48 H 0.112 0.888 49 H 0.098 0.902 50 H 0.089 0.911 51 H 0.090 0.910 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.654 1.822 -1.061 6.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.051 4.051 3 C -0.200 4.200 4 C 0.307 3.693 5 O -0.444 6.444 6 N -0.342 5.342 7 C 0.012 3.988 8 C 0.051 3.949 9 H 0.059 0.941 10 C -0.130 4.130 11 C -0.068 4.068 12 C -0.146 4.146 13 C -0.159 4.159 14 C -0.149 4.149 15 C -0.142 4.142 16 C -0.079 4.079 17 C 0.082 3.918 18 N -0.312 5.312 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.190 4.190 22 N -0.550 5.550 23 Si 0.720 3.280 24 H -0.217 1.217 25 H -0.215 1.215 26 H -0.198 1.198 27 C -0.141 4.141 28 C -0.220 4.220 29 C -0.218 4.218 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.254 0.746 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.117 0.883 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.130 0.870 49 H 0.116 0.884 50 H 0.107 0.893 51 H 0.109 0.891 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.975 1.226 -1.195 7.182 hybrid contribution -1.090 -0.215 -0.264 1.142 sum 5.884 1.011 -1.460 6.146 Atomic orbital electron populations 1.21921 0.91951 1.03050 1.03074 1.20173 0.97220 0.95490 0.92182 1.21971 1.01144 0.94119 1.02719 1.20239 0.79997 0.84378 0.84682 1.90603 1.39573 1.27103 1.87093 1.45899 1.51807 1.32178 1.04317 1.21221 0.96748 0.96903 0.83966 1.20713 0.86835 0.96058 0.91311 0.94071 1.20885 0.97769 1.00563 0.93773 1.19485 0.95382 0.97914 0.94016 1.21128 1.00056 1.00970 0.92429 1.20847 0.96770 1.00535 0.97706 1.20949 0.96841 0.99904 0.97173 1.21115 1.00195 1.00856 0.92045 1.21025 0.93887 0.94927 0.98045 1.19804 0.97744 0.94090 0.80202 1.44044 0.98743 1.63475 1.24904 1.19151 1.00703 1.07375 1.09904 0.90925 1.24966 0.99442 0.95578 0.98982 1.69953 1.21965 1.15851 1.47265 0.86509 0.81213 0.79423 0.80896 1.21676 1.21485 1.19849 1.22056 1.02674 0.99754 0.89619 1.23105 0.92323 1.02370 1.04241 1.22963 0.98144 1.03262 0.97460 0.90324 0.92221 0.92142 0.92088 0.91788 0.91633 0.74627 0.92600 0.91686 0.90824 0.91903 0.87110 0.87146 0.87015 0.86484 0.88329 0.94064 0.93443 0.86957 0.88359 0.89297 0.89137 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.21 37.16 0.31 -2.02 16 2 C -0.05 -0.74 0.72 -155.66 -0.11 -0.85 16 3 C -0.14 -1.87 6.97 37.16 0.26 -1.61 16 4 C 0.52 9.70 6.48 -10.99 -0.07 9.63 16 5 O -0.56 -12.02 15.65 5.56 0.09 -11.94 16 6 N -0.69 -12.76 3.78 -60.30 -0.23 -12.99 16 7 C 0.14 2.47 4.45 -4.04 -0.02 2.45 16 8 C 0.16 2.92 3.02 -67.64 -0.20 2.71 16 9 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 10 C -0.09 -1.52 5.21 -28.04 -0.15 -1.67 16 11 C -0.07 -1.20 5.76 -104.60 -0.60 -1.81 16 12 C -0.13 -1.99 9.59 -39.42 -0.38 -2.37 16 13 C -0.14 -2.05 10.04 -39.69 -0.40 -2.45 16 14 C -0.13 -1.97 10.05 -39.68 -0.40 -2.37 16 15 C -0.12 -2.13 9.62 -39.46 -0.38 -2.51 16 16 C -0.08 -1.48 5.82 -104.55 -0.61 -2.09 16 17 C 0.21 4.50 4.81 -5.04 -0.02 4.47 16 18 N -0.59 -12.75 2.86 -166.39 -0.48 -13.23 16 19 C -0.24 -5.71 7.01 -15.06 -0.11 -5.82 16 20 H 0.07 1.79 6.13 -52.48 -0.32 1.47 16 21 C 0.01 0.22 5.09 -17.43 -0.09 0.13 16 22 N -0.91 -22.99 10.99 55.49 0.61 -22.38 16 23 Si 0.89 20.24 29.47 -169.99 -5.01 15.23 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.27 -6.14 6.90 56.52 0.39 -5.75 16 27 C -0.12 -1.78 4.75 -90.62 -0.43 -2.21 16 28 C -0.18 -2.22 9.57 -26.70 -0.26 -2.48 16 29 C -0.18 -2.14 9.39 -26.70 -0.25 -2.39 16 30 H 0.08 1.43 7.47 -51.93 -0.39 1.04 16 31 H 0.06 0.84 7.29 -51.93 -0.38 0.46 16 32 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 33 H 0.06 0.77 6.97 -51.93 -0.36 0.41 16 34 H 0.06 0.73 7.07 -51.93 -0.37 0.37 16 35 H 0.06 0.89 7.56 -51.93 -0.39 0.49 16 36 H 0.42 7.97 6.18 -40.82 -0.25 7.72 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.29 7.31 -51.93 -0.38 0.91 16 39 H 0.07 1.28 8.01 -51.93 -0.42 0.86 16 40 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 41 H 0.11 1.47 8.05 -52.49 -0.42 1.05 16 42 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 44 H 0.12 1.89 8.05 -52.49 -0.42 1.47 16 45 H 0.10 2.42 6.38 -51.93 -0.33 2.09 16 46 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 48 H 0.11 1.84 7.47 -51.93 -0.39 1.46 16 49 H 0.10 1.11 5.85 -51.93 -0.30 0.81 16 50 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 52 H 0.09 1.04 7.07 -51.93 -0.37 0.67 16 LS Contribution 398.49 15.07 6.01 6.01 Total: -1.00 -26.70 398.49 -11.35 -38.05 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -8.43 Total: 14.49 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -3.91 Total: -13.24 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.09 Total: -48.60 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.01 Total: 15.23 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -26.70 -11.35 -38.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273824408.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.527 kcal (2) G-P(sol) polarization free energy of solvation -26.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds