Wall clock time and date at job start Wed Apr 1 2020 03:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47154 * 2 1 4 4 C 1.50693 * 109.47400 * 120.00204 * 2 1 3 5 5 O 1.21288 * 119.99751 * 119.99504 * 4 2 1 6 6 N 1.34776 * 120.00457 * 300.00361 * 4 2 1 7 7 C 1.46494 * 120.00457 * 180.02562 * 6 4 2 8 8 C 1.52994 * 109.47222 * 179.97438 * 7 6 4 9 9 H 1.08999 * 109.77289 * 65.73286 * 8 7 6 10 10 C 1.52796 * 109.77437 * 186.52693 * 8 7 6 11 11 C 1.50598 * 110.84988 * 167.16662 * 10 8 7 12 12 C 1.38978 * 117.63000 * 160.01761 * 11 10 8 13 13 C 1.37912 * 120.57777 * 178.86230 * 12 11 10 14 14 C 1.38267 * 119.82259 * 359.97438 * 13 12 11 15 15 C 1.37955 * 119.72297 * 0.25174 * 14 13 12 16 16 C 1.37669 * 122.84437 * 339.37362 * 11 10 8 17 17 C 1.50807 * 122.33401 * 2.11084 * 16 11 10 18 18 N 1.46680 * 109.68972 * 348.04974 * 17 16 11 19 19 C 1.36942 * 121.31733 * 224.45755 * 18 17 16 20 20 H 1.07995 * 119.99539 * 154.03314 * 19 18 17 21 21 C 1.38804 * 120.00075 * 334.03812 * 19 18 17 22 22 N 1.31620 * 120.00116 * 344.71122 * 21 19 18 23 23 Si 1.86804 * 120.00245 * 164.71917 * 21 19 18 24 24 H 1.48496 * 109.47254 * 91.04081 * 23 21 19 25 25 H 1.48498 * 109.47073 * 211.04743 * 23 21 19 26 26 H 1.48503 * 109.46628 * 331.04155 * 23 21 19 27 27 C 1.53003 * 109.46724 * 240.00237 * 2 1 3 28 28 C 1.53003 * 117.49551 * 128.61860 * 27 2 1 29 29 C 1.52999 * 60.00081 * 252.51054 * 28 27 2 30 30 H 1.09005 * 109.46656 * 299.99778 * 1 2 3 31 31 H 1.08998 * 109.47154 * 59.99779 * 1 2 3 32 32 H 1.08999 * 109.47133 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47227 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47213 * 300.00855 * 3 2 1 35 35 H 1.09005 * 109.46870 * 60.00065 * 3 2 1 36 36 H 0.97003 * 119.99257 * 359.97438 * 6 4 2 37 37 H 1.08997 * 109.47455 * 59.99425 * 7 6 4 38 38 H 1.09011 * 109.46813 * 299.99218 * 7 6 4 39 39 H 1.09004 * 109.19639 * 46.81905 * 10 8 7 40 40 H 1.08997 * 109.20098 * 287.53025 * 10 8 7 41 41 H 1.08001 * 119.71324 * 358.84349 * 12 11 10 42 42 H 1.07991 * 120.08812 * 179.97438 * 13 12 11 43 43 H 1.08003 * 120.13726 * 180.27591 * 14 13 12 44 44 H 1.08004 * 119.74782 * 180.02562 * 15 14 13 45 45 H 1.09000 * 109.43755 * 108.12095 * 17 16 11 46 46 H 1.09004 * 109.43194 * 227.98475 * 17 16 11 47 47 H 0.97004 * 119.99875 * 180.02562 * 22 21 19 48 48 H 1.08998 * 115.54927 * 274.32940 * 27 2 1 49 49 H 1.09001 * 117.50133 * 0.02562 * 28 27 2 50 50 H 1.09000 * 117.49928 * 145.01690 * 28 27 2 51 51 H 1.08992 * 117.49763 * 252.50958 * 29 28 27 52 52 H 1.08996 * 117.49434 * 107.49057 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6966 1.1190 6 7 1.7069 -0.2501 2.4545 7 6 2.1957 -0.9404 3.6506 8 6 1.6861 -0.2190 4.8999 9 1 0.6010 -0.3041 4.9580 10 6 2.3212 -0.8330 6.1466 11 6 2.0901 0.0404 7.3514 12 6 2.2157 -0.5451 8.6056 13 6 2.0402 0.2039 9.7502 14 6 1.7371 1.5493 9.6519 15 6 1.6072 2.1321 8.4083 16 6 1.7772 1.3776 7.2553 17 6 1.5941 2.0698 5.9280 18 7 2.0721 1.2007 4.8474 19 6 2.8470 1.6905 3.8301 20 1 3.5210 1.0337 3.3005 21 6 2.7661 3.0312 3.4797 22 7 1.7547 3.7613 3.8996 23 14 4.0927 3.7993 2.4121 24 1 3.7075 3.6817 0.9828 25 1 4.2454 5.2331 2.7673 26 1 5.3797 3.0937 2.6377 27 6 2.0399 -0.7212 -1.2493 28 6 3.0740 0.0053 -2.1118 29 6 1.6356 -0.1494 -2.6097 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.1494 0.5387 2.5435 37 1 3.2857 -0.9400 3.6504 38 1 1.8327 -1.9683 3.6507 39 1 3.3935 -0.9443 5.9848 40 1 1.8828 -1.8147 6.3258 41 1 2.4525 -1.5959 8.6845 42 1 2.1392 -0.2593 10.7207 43 1 1.6029 2.1416 10.5450 44 1 1.3708 3.1831 8.3310 45 1 0.5373 2.2894 5.7762 46 1 2.1616 3.0004 5.9229 47 1 1.6980 4.6982 3.6545 48 1 2.1266 -1.8044 -1.1643 49 1 3.3914 0.9969 -1.7890 50 1 3.8415 -0.5999 -2.5943 51 1 1.4567 -0.8563 -3.4197 52 1 1.0063 0.7406 -2.6145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273824410.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:13 Heat of formation + Delta-G solvation = 30.455171 kcal Electronic energy + Delta-G solvation = -31488.145858 eV Core-core repulsion = 27646.501676 eV Total energy + Delta-G solvation = -3841.644182 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -39.98128 -39.29212 -37.49456 -36.40072 -33.79808 -33.14156 -32.48452 -31.42259 -30.12345 -28.90092 -27.18094 -25.67601 -25.50222 -24.03962 -22.86757 -22.08035 -21.58466 -21.37118 -20.44793 -19.13519 -18.28141 -16.95529 -16.28997 -16.11971 -15.76465 -15.35654 -14.80073 -14.62910 -14.53310 -14.27021 -14.16093 -13.95499 -13.58699 -13.21432 -12.96673 -12.62318 -12.60880 -12.53885 -12.38411 -12.13659 -11.94733 -11.77592 -11.63869 -11.58232 -11.36047 -11.12137 -10.91815 -10.86685 -10.78742 -10.71750 -10.53028 -10.42488 -10.22265 -10.17193 -10.02029 -9.78654 -9.71260 -9.02806 -8.77931 -8.27788 -8.20012 -7.87493 -6.86975 -5.94799 -3.35264 1.84702 1.92200 3.25365 3.29324 3.36813 3.40809 3.78024 4.07451 4.26764 4.35596 4.79314 5.03833 5.08253 5.13503 5.21092 5.23412 5.27145 5.34837 5.35413 5.45025 5.54404 5.56438 5.66256 5.71187 5.73831 5.85259 5.88246 5.92929 5.99167 6.01265 6.04751 6.10283 6.12616 6.17787 6.21292 6.26615 6.29759 6.35418 6.45083 6.48657 6.53571 6.60580 6.70625 6.80408 6.92371 6.93309 7.10638 7.15126 7.21268 7.47245 7.60633 7.71131 8.21362 8.33731 8.93850 9.04538 9.65252 10.22795 11.14315 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.003739 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.021907 B = 7486.615011 C = 8697.663992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.049 4.049 3 C -0.145 4.145 4 C 0.521 3.479 5 O -0.564 6.564 6 N -0.691 5.691 7 C 0.136 3.864 8 C 0.158 3.842 9 H 0.041 0.959 10 C -0.090 4.090 11 C -0.067 4.067 12 C -0.128 4.128 13 C -0.140 4.140 14 C -0.130 4.130 15 C -0.123 4.123 16 C -0.077 4.077 17 C 0.207 3.793 18 N -0.588 5.588 19 C -0.244 4.244 20 H 0.073 0.927 21 C 0.009 3.991 22 N -0.903 5.903 23 Si 0.888 3.112 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.123 4.123 28 C -0.183 4.183 29 C -0.181 4.181 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.416 0.584 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.042 0.958 46 H 0.095 0.905 47 H 0.255 0.745 48 H 0.112 0.888 49 H 0.100 0.900 50 H 0.089 0.911 51 H 0.090 0.910 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 -5.340 -0.917 6.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.052 4.052 3 C -0.202 4.202 4 C 0.307 3.693 5 O -0.444 6.444 6 N -0.342 5.342 7 C 0.011 3.989 8 C 0.051 3.949 9 H 0.059 0.941 10 C -0.130 4.130 11 C -0.068 4.068 12 C -0.146 4.146 13 C -0.158 4.158 14 C -0.149 4.149 15 C -0.142 4.142 16 C -0.079 4.079 17 C 0.082 3.918 18 N -0.311 5.311 19 C -0.373 4.373 20 H 0.091 0.909 21 C -0.189 4.189 22 N -0.547 5.547 23 Si 0.717 3.283 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.142 4.142 28 C -0.220 4.220 29 C -0.218 4.218 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.254 0.746 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.060 0.940 46 H 0.113 0.887 47 H 0.065 0.935 48 H 0.130 0.870 49 H 0.118 0.882 50 H 0.107 0.893 51 H 0.108 0.892 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.058 -5.837 -1.039 6.671 hybrid contribution 0.604 0.971 -0.228 1.166 sum -2.454 -4.866 -1.268 5.595 Atomic orbital electron populations 1.21804 0.92725 1.02113 1.02649 1.20190 0.96603 0.96224 0.92153 1.22045 1.01663 0.93280 1.03213 1.20254 0.80258 0.84116 0.84688 1.90606 1.39283 1.27411 1.87102 1.45910 1.52391 1.31612 1.04314 1.21224 0.99544 0.94130 0.83976 1.20705 0.96356 0.86521 0.91324 0.94089 1.20885 1.01634 0.96720 0.93745 1.19487 0.99343 0.93882 0.94038 1.21129 1.01700 0.99327 0.92417 1.20851 1.02733 0.94518 0.97715 1.20951 1.01655 0.95084 0.97171 1.21113 1.01205 0.99837 0.92048 1.20989 0.95475 0.93442 0.97961 1.19759 0.98380 0.93338 0.80319 1.44042 1.59978 1.02519 1.24563 1.19129 1.14797 0.93424 1.09951 0.90924 1.24910 0.97036 0.97850 0.99153 1.69990 1.28478 1.07681 1.48594 0.86548 0.82360 0.78661 0.80708 1.20602 1.21735 1.20611 1.22042 1.03049 0.99543 0.89533 1.23113 0.92283 1.02642 1.03987 1.22947 0.98424 1.03156 0.97293 0.91729 0.91798 0.92436 0.92077 0.92325 0.90142 0.74576 0.91679 0.92587 0.90792 0.91892 0.87087 0.87130 0.87002 0.86488 0.94004 0.88660 0.93478 0.87017 0.88185 0.89262 0.89184 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.21 37.16 0.31 -1.50 16 2 C -0.05 -0.75 0.72 -155.66 -0.11 -0.87 16 3 C -0.14 -2.37 6.97 37.16 0.26 -2.11 16 4 C 0.52 9.67 6.48 -10.99 -0.07 9.60 16 5 O -0.56 -12.00 15.65 5.55 0.09 -11.91 16 6 N -0.69 -12.76 3.76 -60.30 -0.23 -12.98 16 7 C 0.14 2.46 4.45 -4.05 -0.02 2.45 16 8 C 0.16 2.92 3.02 -67.65 -0.20 2.71 16 9 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 10 C -0.09 -1.52 5.21 -28.04 -0.15 -1.66 16 11 C -0.07 -1.19 5.76 -104.61 -0.60 -1.79 16 12 C -0.13 -1.98 9.59 -39.43 -0.38 -2.36 16 13 C -0.14 -2.04 10.05 -39.69 -0.40 -2.44 16 14 C -0.13 -1.96 10.05 -39.67 -0.40 -2.36 16 15 C -0.12 -2.12 9.62 -39.47 -0.38 -2.50 16 16 C -0.08 -1.48 5.82 -104.56 -0.61 -2.08 16 17 C 0.21 4.50 4.84 -5.04 -0.02 4.47 16 18 N -0.59 -12.72 2.86 -166.40 -0.48 -13.20 16 19 C -0.24 -5.75 7.03 -15.06 -0.11 -5.86 16 20 H 0.07 1.79 6.09 -52.49 -0.32 1.47 16 21 C 0.01 0.23 4.99 -17.43 -0.09 0.14 16 22 N -0.90 -22.85 11.17 55.49 0.62 -22.23 16 23 Si 0.89 20.16 29.58 -169.99 -5.03 15.13 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C -0.12 -1.79 4.76 -90.61 -0.43 -2.22 16 28 C -0.18 -2.46 9.57 -26.73 -0.26 -2.72 16 29 C -0.18 -2.14 9.38 -26.73 -0.25 -2.40 16 30 H 0.06 0.88 7.57 -51.93 -0.39 0.49 16 31 H 0.06 0.74 7.29 -51.93 -0.38 0.36 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.08 6.97 -51.93 -0.36 0.72 16 34 H 0.06 0.84 7.07 -51.93 -0.37 0.47 16 35 H 0.08 1.48 7.56 -51.93 -0.39 1.08 16 36 H 0.42 8.00 6.17 -40.82 -0.25 7.74 16 37 H 0.06 1.30 7.32 -51.93 -0.38 0.92 16 38 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 39 H 0.07 1.28 8.01 -51.93 -0.42 0.87 16 40 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.11 1.47 8.05 -52.49 -0.42 1.05 16 42 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 43 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 44 H 0.12 1.88 8.05 -52.48 -0.42 1.46 16 45 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.10 2.32 6.43 -51.93 -0.33 1.99 16 47 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 48 H 0.11 1.76 7.47 -51.93 -0.39 1.37 16 49 H 0.10 1.39 5.85 -51.93 -0.30 1.09 16 50 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 51 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 52 H 0.09 1.04 7.07 -51.93 -0.37 0.67 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -26.55 399.20 -11.35 -37.90 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -8.44 Total: 14.76 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -3.91 Total: -13.48 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.08 Total: -48.41 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -26.55 -11.35 -37.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273824410.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.355 kcal (2) G-P(sol) polarization free energy of solvation -26.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds