Wall clock time and date at job start Wed Apr 1 2020 03:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47160 * 2 1 4 4 C 1.38233 * 120.00453 * 89.99743 * 3 2 1 5 5 C 1.38232 * 120.00157 * 180.02562 * 4 3 2 6 6 C 1.38228 * 119.99976 * 359.95775 * 5 4 3 7 7 C 1.50700 * 119.99981 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47047 * 359.97438 * 7 6 5 9 9 C 1.53006 * 109.47111 * 119.99628 * 7 6 5 10 10 C 1.50694 * 109.47301 * 239.99910 * 7 6 5 11 11 O 1.21275 * 120.00060 * 359.72285 * 10 7 6 12 12 N 1.34781 * 120.00274 * 179.97438 * 10 7 6 13 13 C 1.46496 * 120.00381 * 179.72324 * 12 10 7 14 14 C 1.52998 * 109.47403 * 180.02562 * 13 12 10 15 15 H 1.08998 * 115.51711 * 330.41508 * 14 13 12 16 16 C 1.53003 * 117.44345 * 185.00112 * 14 13 12 17 17 H 1.09002 * 119.53858 * 4.11709 * 16 14 13 18 18 C 1.54381 * 118.12191 * 159.21213 * 16 14 13 19 19 N 1.51833 * 102.86606 * 88.02095 * 18 16 14 20 20 C 1.36938 * 127.61167 * 140.54834 * 19 18 16 21 21 H 1.08003 * 120.00154 * 194.65379 * 20 19 18 22 22 C 1.38814 * 120.00247 * 14.64399 * 20 19 18 23 23 N 1.31624 * 119.99613 * 9.01938 * 22 20 19 24 24 Si 1.86801 * 120.00224 * 189.01817 * 22 20 19 25 25 H 1.48496 * 109.46887 * 90.00307 * 24 22 20 26 26 H 1.48505 * 109.46743 * 210.00440 * 24 22 20 27 27 H 1.48498 * 109.46934 * 329.99973 * 24 22 20 28 28 C 1.48143 * 104.54912 * 320.26682 * 19 18 16 29 29 C 1.52999 * 117.44208 * 115.75907 * 14 13 12 30 30 H 1.09001 * 119.53978 * 355.88923 * 29 14 13 31 31 C 1.38228 * 120.00303 * 0.27281 * 6 5 4 32 32 C 1.38235 * 119.99899 * 270.01995 * 3 2 1 33 33 H 1.08999 * 109.46798 * 60.00121 * 1 2 3 34 34 H 1.08991 * 109.47217 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47270 * 300.00681 * 1 2 3 36 36 H 1.08996 * 109.47386 * 239.99826 * 2 1 3 37 37 H 1.09001 * 109.47262 * 119.99276 * 2 1 3 38 38 H 1.08001 * 119.99779 * 359.97438 * 4 3 2 39 39 H 1.08002 * 119.99720 * 179.97438 * 5 4 3 40 40 H 1.08996 * 109.47200 * 300.00198 * 9 7 6 41 41 H 1.09002 * 109.46984 * 60.00183 * 9 7 6 42 42 H 1.09001 * 109.46889 * 179.97438 * 9 7 6 43 43 H 0.97001 * 119.99893 * 359.73003 * 12 10 7 44 44 H 1.09007 * 109.46962 * 300.00506 * 13 12 10 45 45 H 1.08999 * 109.47117 * 59.99825 * 13 12 10 46 46 H 1.09002 * 110.40904 * 205.97551 * 18 16 14 47 47 H 1.09001 * 110.40806 * 328.40745 * 18 16 14 48 48 H 0.97000 * 120.00006 * 179.97438 * 23 22 20 49 49 H 1.08990 * 110.41061 * 281.07448 * 28 19 18 50 50 H 1.09005 * 110.40402 * 158.64145 * 28 19 18 51 51 H 1.08002 * 120.00340 * 179.72747 * 31 6 5 52 52 H 1.08003 * 119.99757 * 359.97438 * 32 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7230 3.3760 1.1970 6 6 2.9537 4.0274 -0.0001 7 6 3.4561 5.4482 -0.0002 8 1 3.5765 5.7911 1.0275 9 6 4.8042 5.5125 -0.7210 10 6 2.4637 6.3319 -0.7110 11 8 1.4509 5.8541 -1.1766 12 7 2.7041 7.6524 -0.8339 13 6 1.7423 8.5104 -1.5302 14 6 2.2517 9.9531 -1.5291 15 1 2.8733 10.2310 -0.6780 16 6 1.3290 11.0272 -2.1087 17 1 0.3263 10.7538 -2.4375 18 6 1.5715 12.4949 -1.6960 19 7 2.5827 12.9722 -2.7231 20 6 2.6328 14.1926 -3.3421 21 1 3.2502 14.3292 -4.2177 22 6 1.8898 15.2544 -2.8444 23 7 1.2795 15.1434 -1.6835 24 14 1.7563 16.8405 -3.8221 25 1 0.5815 16.7664 -4.7274 26 1 1.5914 17.9843 -2.8895 27 1 2.9899 17.0315 -4.6265 28 6 3.5043 11.8256 -2.8988 29 6 2.5880 10.5832 -2.8822 30 1 2.5231 9.9792 -3.7872 31 6 2.7189 3.3774 -1.1972 32 6 2.2623 2.0726 -1.1972 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 -0.3634 0.5139 0.8899 36 1 1.8934 -0.5138 -0.8899 37 1 1.8934 -0.5137 0.8900 38 1 2.0823 1.5636 2.1324 39 1 2.9026 3.8853 2.1323 40 1 5.5219 4.8734 -0.2068 41 1 4.6834 5.1698 -1.7487 42 1 5.1673 6.5403 -0.7214 43 1 3.5141 8.0346 -0.4613 44 1 1.6269 8.1670 -2.5583 45 1 0.7795 8.4643 -1.0215 46 1 0.6482 13.0690 -1.7732 47 1 1.9670 12.5440 -0.6814 48 1 0.7606 15.8854 -1.3355 49 1 4.2182 11.7824 -2.0764 50 1 4.0262 11.9003 -3.8529 51 1 2.8950 3.8879 -2.1325 52 1 2.0824 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276726108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:17 Heat of formation + Delta-G solvation = 30.039243 kcal Electronic energy + Delta-G solvation = -28548.862199 eV Core-core repulsion = 24707.199981 eV Total energy + Delta-G solvation = -3841.662218 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -40.51718 -39.25086 -38.54935 -35.38980 -34.88065 -33.39646 -32.74409 -31.09995 -30.73929 -28.86164 -27.39634 -27.09092 -25.31970 -24.68194 -23.14639 -22.91782 -21.23131 -21.03787 -20.40197 -19.53903 -19.17787 -17.25922 -16.81364 -16.78708 -15.92256 -15.80706 -15.19695 -15.15153 -14.75035 -14.37419 -14.20909 -14.05437 -13.88035 -13.63791 -13.52490 -13.34979 -13.16451 -12.98499 -12.77986 -12.65741 -12.49695 -12.10067 -11.88951 -11.81965 -11.73520 -11.42370 -11.24907 -11.10172 -11.02340 -11.00624 -10.84700 -10.67366 -10.35459 -10.13116 -9.90333 -9.68292 -9.40957 -9.14287 -9.03426 -8.93957 -8.70369 -8.66262 -6.88834 -5.79699 -3.12960 1.12694 1.28022 2.57998 3.08113 3.38111 3.43346 3.45093 3.63001 4.12901 4.28066 4.45397 4.48454 4.54388 4.65172 4.78589 4.83538 4.90190 4.94608 5.01432 5.05219 5.22268 5.26336 5.27991 5.32600 5.35655 5.39706 5.44443 5.50272 5.51743 5.56689 5.64961 5.73962 5.78578 5.82518 5.88942 5.89967 5.91869 5.92593 5.94977 6.21676 6.24241 6.36290 6.43542 6.44595 6.54919 6.64835 6.68773 6.83672 6.89449 7.29818 7.46228 7.50877 7.69578 8.14483 8.17317 9.05781 9.72473 10.49124 11.35188 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.032706 B = 0.001607 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.903220 B =17424.877678 C =17654.197622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.084 4.084 4 C -0.122 4.122 5 C -0.109 4.109 6 C -0.070 4.070 7 C -0.072 4.072 8 H 0.104 0.896 9 C -0.141 4.141 10 C 0.515 3.485 11 O -0.534 6.534 12 N -0.723 5.723 13 C 0.155 3.845 14 C -0.151 4.151 15 H 0.102 0.898 16 C -0.161 4.161 17 H 0.102 0.898 18 C 0.183 3.817 19 N -0.600 5.600 20 C -0.225 4.225 21 H 0.076 0.924 22 C -0.007 4.007 23 N -0.918 5.918 24 Si 0.912 3.088 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.157 3.843 29 C -0.169 4.169 30 H 0.103 0.897 31 C -0.079 4.079 32 C -0.120 4.120 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.401 0.599 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.029 0.971 48 H 0.254 0.746 49 H 0.022 0.978 50 H 0.049 0.951 51 H 0.118 0.882 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.770 -28.520 6.069 29.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.084 4.084 4 C -0.140 4.140 5 C -0.127 4.127 6 C -0.071 4.071 7 C -0.093 4.093 8 H 0.122 0.878 9 C -0.199 4.199 10 C 0.300 3.700 11 O -0.410 6.410 12 N -0.375 5.375 13 C 0.032 3.968 14 C -0.171 4.171 15 H 0.120 0.880 16 C -0.181 4.181 17 H 0.120 0.880 18 C 0.059 3.941 19 N -0.325 5.325 20 C -0.353 4.353 21 H 0.094 0.906 22 C -0.204 4.204 23 N -0.564 5.564 24 Si 0.742 3.258 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.031 3.969 29 C -0.189 4.189 30 H 0.121 0.879 31 C -0.097 4.097 32 C -0.138 4.138 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.236 0.764 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.047 0.953 48 H 0.064 0.936 49 H 0.040 0.960 50 H 0.068 0.932 51 H 0.136 0.864 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.947 -28.557 5.707 29.388 hybrid contribution 0.193 1.125 -0.260 1.171 sum 4.140 -27.432 5.447 28.272 Atomic orbital electron populations 1.21749 0.94705 1.01570 1.02444 1.20534 0.96240 0.92744 1.02628 1.19879 0.99008 0.96218 0.93260 1.20912 1.00769 0.94894 0.97424 1.20970 0.99615 0.94954 0.97156 1.19270 1.00340 0.93847 0.93618 1.20297 0.95307 0.92201 1.01506 0.87826 1.21804 0.94291 1.02873 1.00888 1.20451 0.87145 0.82393 0.80004 1.90725 1.27955 1.74186 1.48146 1.46041 1.25214 1.07732 1.58486 1.20865 0.91675 0.87338 0.96945 1.22547 1.04622 0.91996 0.97887 0.87962 1.24136 0.94276 0.96135 1.03549 0.88001 1.21721 0.95459 0.86187 0.90724 1.46101 1.27441 1.10978 1.47953 1.19029 1.25020 0.85132 1.06136 0.90578 1.24863 1.01314 0.97720 0.96492 1.69883 1.37059 1.31711 1.17767 0.86118 0.77918 0.82812 0.78911 1.21536 1.21675 1.20594 1.21079 0.91389 0.86111 0.98345 1.23999 1.00920 1.00240 0.93694 0.87947 1.20879 0.97266 0.93992 0.97580 1.20972 1.00478 0.94915 0.97457 0.92441 0.92492 0.92536 0.91157 0.91193 0.86286 0.86183 0.91193 0.91802 0.91453 0.76431 0.91520 0.91230 0.89083 0.95265 0.93599 0.96018 0.93216 0.86351 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.62 16 2 C -0.08 -0.57 6.06 -27.88 -0.17 -0.74 16 3 C -0.08 -0.75 5.13 -104.62 -0.54 -1.29 16 4 C -0.12 -1.08 9.70 -39.59 -0.38 -1.47 16 5 C -0.11 -1.01 9.67 -39.59 -0.38 -1.40 16 6 C -0.07 -0.72 4.40 -104.63 -0.46 -1.18 16 7 C -0.07 -0.64 2.90 -92.92 -0.27 -0.91 16 8 H 0.10 0.73 7.88 -51.93 -0.41 0.32 16 9 C -0.14 -0.99 8.91 37.16 0.33 -0.66 16 10 C 0.51 6.22 7.02 -10.99 -0.08 6.15 16 11 O -0.53 -8.59 15.08 5.56 0.08 -8.50 16 12 N -0.72 -8.02 5.45 -60.30 -0.33 -8.34 16 13 C 0.15 2.06 5.95 -4.04 -0.02 2.04 16 14 C -0.15 -2.25 5.38 -90.62 -0.49 -2.74 16 15 H 0.10 1.50 8.04 -51.93 -0.42 1.08 16 16 C -0.16 -2.99 6.76 -89.22 -0.60 -3.59 16 17 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 18 C 0.18 4.32 5.92 -0.29 0.00 4.32 16 19 N -0.60 -15.24 3.45 -165.70 -0.57 -15.82 16 20 C -0.23 -6.25 10.36 -15.06 -0.16 -6.41 16 21 H 0.08 2.05 7.84 -52.48 -0.41 1.63 16 22 C -0.01 -0.20 5.42 -17.43 -0.09 -0.29 16 23 N -0.92 -26.73 10.82 55.49 0.60 -26.13 16 24 Si 0.91 21.91 29.56 -169.99 -5.03 16.88 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 C 0.16 3.22 7.05 -2.41 -0.02 3.20 16 29 C -0.17 -2.91 6.74 -89.22 -0.60 -3.51 16 30 H 0.10 1.65 8.12 -51.93 -0.42 1.22 16 31 C -0.08 -0.86 7.92 -39.59 -0.31 -1.17 16 32 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 37 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.88 7.95 -52.49 -0.42 0.46 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.49 7.40 -51.93 -0.38 0.11 16 42 H 0.07 0.40 7.57 -51.93 -0.39 0.01 16 43 H 0.40 3.50 7.83 -40.82 -0.32 3.18 16 44 H 0.07 0.94 7.94 -51.93 -0.41 0.53 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.09 2.41 6.56 -51.93 -0.34 2.07 16 47 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.12 1.29 7.51 -52.49 -0.39 0.90 16 52 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 419.11 15.07 6.32 6.32 Total: -1.00 -32.60 419.11 -12.14 -44.74 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.95 Total: 2.68 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -4.27 Total: -11.82 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.30 Total: -50.29 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.08 Total: -8.50 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.60 -12.14 -44.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276726108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.776 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds