Wall clock time and date at job start Wed Apr 1 2020 02:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 110.77717 * 2 1 4 4 N 1.46500 * 109.47133 * 303.23720 * 3 2 1 5 5 C 1.36937 * 119.99621 * 180.02562 * 4 3 2 6 6 H 1.08004 * 120.00429 * 359.97438 * 5 4 3 7 7 C 1.38809 * 119.99898 * 179.97438 * 5 4 3 8 8 N 1.31614 * 120.00273 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99894 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47284 * 89.99637 * 9 7 5 11 11 H 1.48497 * 109.46943 * 209.99378 * 9 7 5 12 12 H 1.48499 * 109.46911 * 329.99544 * 9 7 5 13 13 C 1.55404 * 110.69629 * 236.61022 * 2 1 3 14 14 C 1.54912 * 101.66307 * 277.04850 * 13 2 1 15 15 N 1.47416 * 104.83107 * 323.07456 * 14 13 2 16 16 C 1.34779 * 125.64789 * 204.09006 * 15 14 13 17 17 O 1.21281 * 120.00046 * 174.98706 * 16 15 14 18 18 C 1.50697 * 119.99915 * 354.99650 * 16 15 14 19 19 H 1.09001 * 109.68333 * 334.43705 * 18 16 15 20 20 C 1.53324 * 109.68357 * 213.87767 * 18 16 15 21 21 C 1.52729 * 108.38489 * 170.40288 * 20 18 16 22 22 C 1.50640 * 110.58667 * 51.11878 * 21 20 18 23 23 C 1.38911 * 117.75288 * 162.54605 * 22 21 20 24 24 C 1.37929 * 120.54612 * 179.43547 * 23 22 21 25 25 C 1.38269 * 119.76685 * 0.02562 * 24 23 22 26 26 C 1.37929 * 119.77355 * 0.11171 * 25 24 23 27 27 C 1.37665 * 122.56081 * 342.21129 * 22 21 20 28 28 C 1.50631 * 122.56380 * 0.72195 * 27 22 21 29 29 C 1.47020 * 108.70938 * 24.12964 * 15 14 13 30 30 H 1.08999 * 109.47159 * 296.76043 * 1 2 3 31 31 H 1.09004 * 109.46803 * 56.76199 * 1 2 3 32 32 H 1.09001 * 109.46731 * 176.75653 * 1 2 3 33 33 H 1.09000 * 109.47185 * 63.24168 * 3 2 1 34 34 H 1.09004 * 109.46711 * 183.23705 * 3 2 1 35 35 H 0.96993 * 120.00247 * 0.02562 * 4 3 2 36 36 H 0.97003 * 120.00556 * 180.02562 * 8 7 5 37 37 H 1.09001 * 110.88809 * 158.97980 * 13 2 1 38 38 H 1.08998 * 111.07070 * 35.20019 * 13 2 1 39 39 H 1.09002 * 110.35997 * 204.23497 * 14 13 2 40 40 H 1.09000 * 110.36587 * 81.91510 * 14 13 2 41 41 H 1.08999 * 109.68340 * 290.13756 * 20 18 16 42 42 H 1.09004 * 109.67742 * 50.68945 * 20 18 16 43 43 H 1.09003 * 109.25735 * 290.83473 * 21 20 18 44 44 H 1.09008 * 109.25594 * 171.40102 * 21 20 18 45 45 H 1.08003 * 119.72821 * 359.44445 * 23 22 21 46 46 H 1.07997 * 120.11607 * 180.02562 * 24 23 22 47 47 H 1.08005 * 120.10976 * 180.09713 * 25 24 23 48 48 H 1.08001 * 119.72703 * 179.97438 * 26 25 24 49 49 H 1.08995 * 109.25806 * 221.94590 * 28 27 22 50 50 H 1.09006 * 109.22066 * 102.49839 * 28 27 22 51 51 H 1.09000 * 109.88440 * 118.35470 * 29 15 14 52 52 H 1.08994 * 109.88800 * 239.37349 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4306 0.0000 4 7 1.5382 2.1557 -1.1553 5 6 1.8880 3.4629 -1.3648 6 1 2.5577 3.9595 -0.6781 7 6 1.3819 4.1499 -2.4597 8 7 1.7177 5.4065 -2.6608 9 14 0.2231 3.2913 -3.6469 10 1 -1.1786 3.4801 -3.1942 11 1 0.3871 3.8703 -5.0045 12 1 0.5396 1.8409 -3.6857 13 6 2.0792 -0.8000 -1.2138 14 6 2.0157 -2.2546 -0.6847 15 7 2.3744 -2.1534 0.7416 16 6 2.8897 -3.1455 1.4943 17 8 3.2326 -2.9246 2.6364 18 6 3.0398 -4.5293 0.9167 19 1 2.3144 -4.6736 0.1160 20 6 2.8128 -5.5748 2.0150 21 6 2.7325 -6.9521 1.3598 22 6 3.9130 -7.1760 0.4512 23 6 4.1980 -8.4812 0.0707 24 6 5.2585 -8.7510 -0.7689 25 6 6.0453 -7.7142 -1.2359 26 6 5.7656 -6.4178 -0.8570 27 6 4.6991 -6.1443 -0.0102 28 6 4.4540 -4.7068 0.3675 29 6 2.0760 -0.7912 1.2073 30 1 -0.3633 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8596 32 1 -0.3633 -1.0260 -0.0581 33 1 1.7691 1.9344 0.9176 34 1 3.1610 1.4062 -0.0580 35 1 0.9365 1.7099 -1.7717 36 1 1.3638 5.8867 -3.4257 37 1 3.1058 -0.5102 -1.4379 38 1 1.4402 -0.6739 -2.0878 39 1 2.7338 -2.8820 -1.2129 40 1 1.0079 -2.6548 -0.7950 41 1 3.6428 -5.5518 2.7210 42 1 1.8799 -5.3619 2.5372 43 1 1.8132 -7.0204 0.7780 44 1 2.7247 -7.7188 2.1345 45 1 3.5841 -9.2915 0.4353 46 1 5.4736 -9.7683 -1.0606 47 1 6.8761 -7.9190 -1.8949 48 1 6.3809 -5.6087 -1.2219 49 1 4.5791 -4.0773 -0.5134 50 1 5.1751 -4.4078 1.1283 51 1 1.3263 -0.8255 1.9977 52 1 2.9853 -0.3190 1.5792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278555490.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:35 Heat of formation + Delta-G solvation = -12.402312 kcal Electronic energy + Delta-G solvation = -29929.459481 eV Core-core repulsion = 26085.956859 eV Total energy + Delta-G solvation = -3843.502622 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.90025 -39.88538 -38.30380 -35.99202 -35.04140 -33.05580 -32.64038 -30.92020 -30.53886 -29.58859 -29.25068 -26.95830 -25.95083 -24.39255 -23.46533 -22.82693 -22.48408 -22.01217 -20.09988 -19.25361 -18.75614 -17.77235 -17.05629 -16.82895 -16.22535 -15.95567 -15.50096 -15.01732 -14.67554 -14.51628 -14.38952 -14.11413 -14.05259 -13.86124 -13.61094 -13.41394 -13.33604 -13.05691 -12.92710 -12.56038 -12.44201 -12.40052 -12.28369 -11.90053 -11.84884 -11.72344 -11.68343 -11.43227 -11.30093 -11.16180 -10.92654 -10.77553 -10.67038 -10.44569 -10.40797 -10.08623 -9.76842 -9.59164 -9.07462 -8.92628 -8.87206 -8.68738 -7.25482 -5.78776 -3.14346 1.04137 1.05371 2.49915 2.87003 3.32298 3.35097 3.41972 3.42383 4.10548 4.26029 4.38449 4.51884 4.55795 4.59445 4.60529 4.66881 4.74103 4.80056 4.89405 4.91842 5.01651 5.12714 5.16664 5.18406 5.24578 5.29179 5.35514 5.44177 5.49258 5.52900 5.53698 5.56675 5.65213 5.65682 5.70603 5.79508 5.84329 5.85518 5.90628 5.95396 6.06381 6.15660 6.17176 6.20279 6.25431 6.28438 6.33913 6.43888 6.61713 6.68979 6.69509 7.44565 7.97537 8.07451 8.40031 9.19008 9.90922 10.10858 11.39710 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018134 B = 0.002263 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.669184 B =12369.455985 C =13053.833330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 C 0.173 3.827 4 N -0.752 5.752 5 C -0.243 4.243 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.120 4.120 14 C 0.097 3.903 15 N -0.614 5.614 16 C 0.533 3.467 17 O -0.540 6.540 18 C -0.101 4.101 19 H 0.093 0.907 20 C -0.100 4.100 21 C -0.081 4.081 22 C -0.076 4.076 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.118 4.118 27 C -0.071 4.071 28 C -0.069 4.069 29 C 0.119 3.881 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.031 0.969 34 H 0.030 0.970 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.068 0.932 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 -30.487 4.660 30.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.083 4.083 3 C 0.046 3.954 4 N -0.398 5.398 5 C -0.373 4.373 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.582 5.582 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.158 4.158 14 C -0.025 4.025 15 N -0.347 5.347 16 C 0.321 3.679 17 O -0.417 6.417 18 C -0.122 4.122 19 H 0.111 0.889 20 C -0.138 4.138 21 C -0.118 4.118 22 C -0.076 4.076 23 C -0.139 4.139 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.136 4.136 27 C -0.072 4.072 28 C -0.106 4.106 29 C -0.004 4.004 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.195 0.805 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.099 0.901 50 H 0.104 0.896 51 H 0.087 0.913 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.301 -30.195 5.358 30.843 hybrid contribution -0.811 -0.451 -1.152 1.479 sum 2.489 -30.645 4.206 31.033 Atomic orbital electron populations 1.21775 0.93466 1.00883 1.02958 1.21899 0.96332 0.96364 0.93701 1.20568 0.96092 0.87469 0.91288 1.42682 1.57394 1.11510 1.28228 1.19054 1.23900 0.85934 1.08365 0.89218 1.24668 1.00263 0.95806 0.98439 1.69696 1.48441 1.09102 1.30938 0.86578 0.81672 0.78947 0.81489 1.21068 1.21739 1.20362 1.22903 1.02931 0.92118 0.97839 1.22436 1.00336 0.98881 0.80885 1.48556 1.62810 1.11857 1.11523 1.20203 0.76743 0.85503 0.85454 1.90703 1.49390 1.83294 1.18355 1.21277 0.99104 0.92107 0.99724 0.88923 1.21397 1.03424 0.92284 0.96662 1.20512 0.95908 0.97685 0.97647 1.19638 0.96976 0.92721 0.98250 1.21149 0.98013 0.96009 0.98686 1.21072 0.95793 0.99114 0.98120 1.21073 0.99838 0.92838 1.00278 1.21171 0.97297 0.97080 0.98011 1.19507 0.95652 0.94509 0.97488 1.20374 0.95428 0.93149 1.01665 1.22005 1.00659 0.81158 0.96560 0.92134 0.91695 0.93206 0.95113 0.95217 0.80538 0.93055 0.89943 0.89691 0.90723 0.91302 0.90383 0.90898 0.90411 0.90253 0.86188 0.86169 0.86077 0.86006 0.90134 0.89628 0.91336 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.28 37.16 0.31 -1.50 16 2 C -0.08 -1.16 0.62 -152.53 -0.09 -1.26 16 3 C 0.17 3.20 5.09 -4.04 -0.02 3.18 16 4 N -0.75 -17.01 4.96 -59.90 -0.30 -17.31 16 5 C -0.24 -6.73 10.47 -15.06 -0.16 -6.88 16 6 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 7 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 8 N -0.93 -29.07 13.97 55.49 0.78 -28.29 16 9 Si 0.88 21.52 27.74 -169.99 -4.71 16.80 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.21 6.52 56.52 0.37 -5.85 16 13 C -0.12 -1.52 5.74 -24.45 -0.14 -1.67 16 14 C 0.10 0.99 5.86 -2.53 -0.01 0.98 16 15 N -0.61 -7.50 3.33 -170.53 -0.57 -8.07 16 16 C 0.53 6.78 6.84 -10.99 -0.08 6.71 16 17 O -0.54 -8.84 16.78 5.56 0.09 -8.75 16 18 C -0.10 -0.95 1.96 -91.74 -0.18 -1.13 16 19 H 0.09 0.76 7.13 -51.93 -0.37 0.39 16 20 C -0.10 -0.88 4.80 -26.70 -0.13 -1.01 16 21 C -0.08 -0.57 5.67 -28.05 -0.16 -0.73 16 22 C -0.08 -0.64 5.74 -104.61 -0.60 -1.24 16 23 C -0.12 -0.91 9.61 -39.45 -0.38 -1.29 16 24 C -0.12 -0.90 10.05 -39.68 -0.40 -1.30 16 25 C -0.12 -0.93 10.05 -39.68 -0.40 -1.33 16 26 C -0.12 -0.98 9.61 -39.45 -0.38 -1.36 16 27 C -0.07 -0.64 5.74 -104.62 -0.60 -1.24 16 28 C -0.07 -0.62 4.97 -28.05 -0.14 -0.76 16 29 C 0.12 1.61 6.04 -3.06 -0.02 1.59 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.98 6.69 -51.93 -0.35 0.63 16 32 H 0.05 0.57 7.43 -51.93 -0.39 0.18 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.03 0.57 8.11 -51.93 -0.42 0.15 16 35 H 0.36 7.87 4.08 -40.82 -0.17 7.70 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.08 1.12 8.02 -51.93 -0.42 0.71 16 38 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 39 H 0.07 0.64 7.34 -51.93 -0.38 0.26 16 40 H 0.07 0.62 7.71 -51.93 -0.40 0.22 16 41 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 42 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.47 8.13 -51.92 -0.42 0.05 16 45 H 0.12 0.68 8.05 -52.48 -0.42 0.26 16 46 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 48 H 0.12 0.86 8.05 -52.49 -0.42 0.44 16 49 H 0.08 0.67 7.77 -51.93 -0.40 0.27 16 50 H 0.09 0.86 8.11 -51.93 -0.42 0.44 16 51 H 0.07 0.92 7.84 -51.93 -0.41 0.52 16 52 H 0.07 1.06 7.82 -51.93 -0.41 0.65 16 LS Contribution 403.60 15.07 6.08 6.08 Total: -1.00 -33.03 403.60 -11.06 -44.09 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -8.76 Total: 5.67 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -3.67 Total: -10.22 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.09 Total: -53.68 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.03 -11.06 -44.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278555490.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.686 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds