Wall clock time and date at job start Wed Apr 1 2020 02:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.64209 * 2 1 4 4 N 1.46496 * 109.47235 * 56.85923 * 3 2 1 5 5 C 1.36940 * 120.00050 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99640 * 0.02562 * 5 4 3 7 7 C 1.38808 * 119.99783 * 179.97438 * 5 4 3 8 8 N 1.31615 * 120.00262 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99932 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46732 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47093 * 120.00309 * 9 7 5 12 12 H 1.48499 * 109.47054 * 240.00593 * 9 7 5 13 13 C 1.55156 * 110.87478 * 123.24826 * 2 1 3 14 14 C 1.55123 * 101.48498 * 82.76523 * 13 2 1 15 15 N 1.47423 * 104.72654 * 37.29727 * 14 13 2 16 16 C 1.34777 * 125.65109 * 155.81318 * 15 14 13 17 17 O 1.21283 * 119.99750 * 179.69290 * 16 15 14 18 18 C 1.50702 * 119.99928 * 359.97383 * 16 15 14 19 19 H 1.09003 * 109.67731 * 299.71900 * 18 16 15 20 20 C 1.53323 * 109.68205 * 179.20595 * 18 16 15 21 21 C 1.52727 * 108.38869 * 170.40780 * 20 18 16 22 22 C 1.50631 * 110.59135 * 51.09526 * 21 20 18 23 23 C 1.38917 * 117.75581 * 162.27298 * 22 21 20 24 24 C 1.37926 * 120.54283 * 179.76631 * 23 22 21 25 25 C 1.38269 * 119.77471 * 359.96138 * 24 23 22 26 26 C 1.37929 * 119.77235 * 0.12001 * 25 24 23 27 27 C 1.37663 * 122.56182 * 342.22955 * 22 21 20 28 28 C 1.50645 * 122.57741 * 0.68694 * 27 22 21 29 29 C 1.47025 * 108.69835 * 335.55436 * 15 14 13 30 30 H 1.08996 * 109.46911 * 183.14103 * 1 2 3 31 31 H 1.09000 * 109.46744 * 303.14543 * 1 2 3 32 32 H 1.08995 * 109.46913 * 63.14017 * 1 2 3 33 33 H 1.08999 * 109.47206 * 176.86184 * 3 2 1 34 34 H 1.09004 * 109.47384 * 296.85668 * 3 2 1 35 35 H 0.96998 * 119.99714 * 359.97438 * 4 3 2 36 36 H 0.97006 * 120.00090 * 180.02562 * 8 7 5 37 37 H 1.09005 * 111.00556 * 201.00659 * 13 2 1 38 38 H 1.08999 * 111.00040 * 324.82064 * 13 2 1 39 39 H 1.09004 * 110.49673 * 278.45187 * 14 13 2 40 40 H 1.09004 * 110.34018 * 156.06510 * 14 13 2 41 41 H 1.09005 * 109.67764 * 290.13543 * 20 18 16 42 42 H 1.08998 * 109.68072 * 50.67628 * 20 18 16 43 43 H 1.08999 * 109.25935 * 171.38383 * 21 20 18 44 44 H 1.09007 * 109.25510 * 290.85228 * 21 20 18 45 45 H 1.07992 * 119.72500 * 359.78862 * 23 22 21 46 46 H 1.08002 * 120.11002 * 179.97438 * 24 23 22 47 47 H 1.08001 * 120.11227 * 180.09838 * 25 24 23 48 48 H 1.07995 * 119.73051 * 180.02562 * 26 25 24 49 49 H 1.09001 * 109.29277 * 221.97960 * 28 27 22 50 50 H 1.08998 * 109.22496 * 102.54756 * 28 27 22 51 51 H 1.09004 * 109.88256 * 120.70346 * 29 15 14 52 52 H 1.08999 * 109.88203 * 241.86445 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 7 1.5349 2.1550 1.1565 5 6 1.8819 3.4630 1.3663 6 1 2.5493 3.9614 0.6789 7 6 1.3751 4.1483 2.4618 8 7 0.5614 3.5409 3.2992 9 14 1.8479 5.9328 2.7477 10 1 2.7676 6.3797 1.6708 11 1 0.6259 6.7765 2.7363 12 1 2.5256 6.0607 4.0628 13 6 2.0828 -0.7948 1.2124 14 6 2.0140 -2.2517 0.6840 15 7 2.3756 -2.1507 -0.7417 16 6 2.8902 -3.1436 -1.4938 17 8 3.1459 -2.9484 -2.6632 18 6 3.1420 -4.4983 -0.8834 19 1 3.8515 -4.4043 -0.0612 20 6 3.7069 -5.4471 -1.9471 21 6 4.1739 -6.7251 -1.2535 22 6 3.0857 -7.2761 -0.3696 23 6 3.1887 -8.6015 0.0335 24 6 2.2271 -9.1635 0.8470 25 6 1.1518 -8.4019 1.2661 26 6 1.0468 -7.0862 0.8656 27 6 2.0127 -6.5193 0.0437 28 6 1.8287 -5.0812 -0.3654 29 6 2.0760 -0.7891 -1.2086 30 1 -0.3633 -1.0261 0.0563 31 1 -0.3633 0.5619 0.8605 32 1 -0.3633 0.4643 -0.9168 33 1 3.1577 1.4101 0.0563 34 1 1.7630 1.9355 -0.9168 35 1 0.9352 1.7073 1.7736 36 1 0.2069 4.0200 4.0646 37 1 3.1097 -0.5043 1.4346 38 1 1.4449 -0.6671 2.0869 39 1 1.0050 -2.6497 0.7922 40 1 2.7296 -2.8809 1.2132 41 1 2.9313 -5.6865 -2.6746 42 1 4.5497 -4.9737 -2.4508 43 1 4.4355 -7.4680 -2.0070 44 1 5.0519 -6.5044 -0.6464 45 1 4.0288 -9.1966 -0.2926 46 1 2.3139 -10.1947 1.1559 47 1 0.3965 -8.8360 1.9045 48 1 0.2069 -6.4920 1.1937 49 1 1.4930 -4.5021 0.4949 50 1 1.0758 -5.0252 -1.1515 51 1 2.9851 -0.3162 -1.5801 52 1 1.3251 -0.8248 -1.9979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278555491.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:53 Heat of formation + Delta-G solvation = -15.110517 kcal Electronic energy + Delta-G solvation = -29979.626048 eV Core-core repulsion = 26136.005989 eV Total energy + Delta-G solvation = -3843.620059 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.77 seconds Orbital eigenvalues (eV) -40.88548 -39.78586 -38.19125 -35.95542 -34.89637 -33.11597 -32.50290 -30.73837 -30.25677 -29.47363 -29.10193 -26.71491 -25.65051 -24.48571 -23.38316 -22.73478 -22.44980 -22.29530 -20.03933 -19.14835 -18.70316 -17.33800 -16.84305 -16.71250 -16.23657 -15.89899 -15.47527 -14.99602 -14.60144 -14.48489 -14.24131 -14.01198 -13.97335 -13.85077 -13.45627 -13.40219 -13.16719 -13.13415 -12.59809 -12.55454 -12.41568 -12.28464 -12.11859 -11.84034 -11.72508 -11.62418 -11.50298 -11.26567 -11.04523 -11.03191 -10.85574 -10.68640 -10.59625 -10.34685 -10.23835 -9.95776 -9.75922 -9.63471 -9.03532 -8.89882 -8.82832 -8.60727 -6.93635 -5.79241 -3.07089 1.08070 1.09278 2.59292 2.96196 3.42031 3.46070 3.48366 3.50094 4.14872 4.29396 4.47691 4.55927 4.63478 4.66950 4.69295 4.72484 4.82173 4.84125 4.96989 5.03662 5.09121 5.18506 5.21463 5.28474 5.35083 5.36129 5.48217 5.49877 5.57122 5.57653 5.58634 5.71051 5.73342 5.76923 5.88064 5.91249 5.98986 6.01493 6.05249 6.09301 6.21708 6.22234 6.24010 6.31846 6.37787 6.39418 6.45175 6.64756 6.73574 6.75165 6.82991 7.53138 7.69571 8.14408 8.40169 9.51903 10.08803 10.44044 11.43789 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.002155 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.795922 B =12992.421856 C =13772.707693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C 0.168 3.832 4 N -0.728 5.728 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.906 3.094 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.117 4.117 14 C 0.096 3.904 15 N -0.612 5.612 16 C 0.531 3.469 17 O -0.543 6.543 18 C -0.101 4.101 19 H 0.099 0.901 20 C -0.098 4.098 21 C -0.082 4.082 22 C -0.076 4.076 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.117 4.117 27 C -0.072 4.072 28 C -0.077 4.077 29 C 0.118 3.882 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.021 0.979 34 H 0.022 0.978 35 H 0.385 0.615 36 H 0.254 0.746 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.087 0.913 50 H 0.081 0.919 51 H 0.069 0.931 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 -26.354 -5.596 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.078 4.078 3 C 0.040 3.960 4 N -0.373 5.373 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.155 4.155 14 C -0.027 4.027 15 N -0.346 5.346 16 C 0.320 3.680 17 O -0.421 6.421 18 C -0.123 4.123 19 H 0.117 0.883 20 C -0.136 4.136 21 C -0.119 4.119 22 C -0.076 4.076 23 C -0.139 4.139 24 C -0.141 4.141 25 C -0.141 4.141 26 C -0.135 4.135 27 C -0.072 4.072 28 C -0.114 4.114 29 C -0.004 4.004 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.219 0.781 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.105 0.895 50 H 0.099 0.901 51 H 0.088 0.912 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.230 -26.139 -6.303 27.082 hybrid contribution -0.058 0.843 0.613 1.044 sum 3.172 -25.296 -5.690 26.121 Atomic orbital electron populations 1.21759 0.93305 1.00692 1.03183 1.21792 0.96436 0.96205 0.93405 1.20598 0.95678 0.87955 0.91747 1.42347 1.56933 1.10747 1.27294 1.19272 1.22793 0.87866 1.06877 0.91177 1.24714 1.00113 0.98322 0.97842 1.69656 1.36383 1.36172 1.16072 0.86128 0.77557 0.85014 0.77568 1.20582 1.21908 1.21908 1.22874 1.02813 0.91734 0.98051 1.22588 1.00156 0.99103 0.80853 1.48533 1.62540 1.11865 1.11630 1.20199 0.76791 0.85098 0.85937 1.90695 1.52237 1.82792 1.16330 1.21266 0.98987 0.92039 0.99968 0.88263 1.21369 1.01906 0.93719 0.96616 1.20529 0.96305 0.97332 0.97704 1.19665 0.95859 0.93733 0.98298 1.21152 0.99280 0.94724 0.98741 1.21069 0.94852 0.99808 0.98387 1.21069 0.98365 0.94322 1.00318 1.21172 0.98771 0.95538 0.98065 1.19527 0.94667 0.95317 0.97729 1.20565 0.96684 0.92201 1.01934 1.22044 1.00463 0.81120 0.96818 0.93558 0.90794 0.92641 0.96095 0.96055 0.78067 0.93593 0.90224 0.89260 0.91122 0.90773 0.91001 0.90190 0.90323 0.90397 0.86222 0.86209 0.86102 0.86003 0.89506 0.90091 0.91234 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.28 37.16 0.31 -1.65 16 2 C -0.08 -1.17 0.61 -152.68 -0.09 -1.27 16 3 C 0.17 3.26 5.08 -4.04 -0.02 3.24 16 4 N -0.73 -17.52 5.15 -59.91 -0.31 -17.83 16 5 C -0.24 -6.47 9.99 -15.06 -0.15 -6.63 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 9 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 C -0.12 -1.60 5.74 -24.47 -0.14 -1.74 16 14 C 0.10 1.04 4.83 -2.41 -0.01 1.03 16 15 N -0.61 -7.87 3.32 -170.38 -0.57 -8.43 16 16 C 0.53 7.07 7.20 -10.98 -0.08 6.99 16 17 O -0.54 -9.14 16.18 5.55 0.09 -9.05 16 18 C -0.10 -1.01 1.89 -91.74 -0.17 -1.18 16 19 H 0.10 0.90 7.82 -51.93 -0.41 0.50 16 20 C -0.10 -0.93 4.71 -26.70 -0.13 -1.05 16 21 C -0.08 -0.63 5.67 -28.06 -0.16 -0.78 16 22 C -0.08 -0.66 5.74 -104.61 -0.60 -1.26 16 23 C -0.12 -0.95 9.61 -39.44 -0.38 -1.33 16 24 C -0.12 -0.93 10.05 -39.68 -0.40 -1.33 16 25 C -0.12 -0.95 10.05 -39.68 -0.40 -1.35 16 26 C -0.12 -0.99 9.61 -39.44 -0.38 -1.37 16 27 C -0.07 -0.65 5.74 -104.61 -0.60 -1.25 16 28 C -0.08 -0.68 4.66 -28.05 -0.13 -0.81 16 29 C 0.12 1.70 6.04 -3.06 -0.02 1.68 16 30 H 0.05 0.59 7.41 -51.93 -0.38 0.20 16 31 H 0.07 1.27 6.69 -51.93 -0.35 0.92 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.38 9.55 6.21 -40.82 -0.25 9.30 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.08 1.18 8.02 -51.93 -0.42 0.76 16 38 H 0.09 1.27 8.04 -51.93 -0.42 0.85 16 39 H 0.07 0.68 6.83 -51.93 -0.35 0.33 16 40 H 0.07 0.68 7.29 -51.93 -0.38 0.31 16 41 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.08 0.81 7.81 -51.93 -0.41 0.41 16 43 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.12 0.72 8.05 -52.49 -0.42 0.30 16 46 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 47 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 48 H 0.12 0.86 8.05 -52.49 -0.42 0.43 16 49 H 0.09 0.70 5.34 -51.93 -0.28 0.42 16 50 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 51 H 0.07 1.06 7.82 -51.93 -0.41 0.66 16 52 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 LS Contribution 401.94 15.07 6.06 6.06 Total: -1.00 -31.85 401.94 -11.32 -43.17 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -8.64 Total: 6.28 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -3.65 Total: -10.57 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.15 Total: -53.02 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.85 -11.32 -43.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278555491.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.056 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.77 seconds