Wall clock time and date at job start Wed Apr 1 2020 02:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 115.55841 * 2 1 4 4 C 1.38237 * 120.00269 * 79.71524 * 3 2 1 5 5 C 1.38238 * 120.00066 * 179.80839 * 4 3 2 6 6 C 1.38230 * 120.00053 * 0.41866 * 5 4 3 7 7 C 1.38240 * 120.00096 * 359.80787 * 6 5 4 8 8 C 1.38235 * 120.00041 * 259.98168 * 3 2 1 9 9 C 1.53078 * 117.49689 * 214.28882 * 2 1 3 10 10 C 1.52996 * 59.98560 * 252.51219 * 9 2 1 11 11 H 1.09003 * 117.49703 * 107.49886 * 10 9 2 12 12 C 1.50693 * 117.50010 * 252.49496 * 10 9 2 13 13 O 1.21281 * 120.00099 * 2.47066 * 12 10 9 14 14 N 1.34777 * 120.00066 * 182.73850 * 12 10 9 15 15 C 1.46932 * 120.63093 * 4.35236 * 14 12 10 16 16 C 1.53190 * 108.77257 * 233.58438 * 15 14 12 17 17 C 1.53042 * 109.31233 * 305.35980 * 16 15 14 18 18 C 1.53043 * 109.53563 * 61.36928 * 17 16 15 19 19 C 1.46929 * 120.63022 * 184.06766 * 14 12 10 20 20 H 1.08996 * 109.58519 * 246.20229 * 19 14 12 21 21 C 1.52992 * 109.58533 * 6.63027 * 19 14 12 22 22 N 1.46499 * 109.47457 * 287.11151 * 21 19 14 23 23 C 1.36937 * 120.00274 * 184.72054 * 22 21 19 24 24 H 1.08002 * 120.00105 * 5.05718 * 23 22 21 25 25 C 1.38813 * 120.00048 * 185.06098 * 23 22 21 26 26 N 1.31624 * 120.00101 * 5.44758 * 25 23 22 27 27 Si 1.86803 * 120.00080 * 185.44878 * 25 23 22 28 28 H 1.48495 * 109.47028 * 64.99665 * 27 25 23 29 29 H 1.48502 * 109.46900 * 185.00026 * 27 25 23 30 30 H 1.48506 * 109.46722 * 304.99467 * 27 25 23 31 31 H 1.08997 * 109.47350 * 274.30632 * 1 2 3 32 32 H 1.08998 * 109.47158 * 34.31624 * 1 2 3 33 33 H 1.09005 * 109.46660 * 154.31059 * 1 2 3 34 34 H 1.08006 * 119.99738 * 359.97438 * 4 3 2 35 35 H 1.07999 * 119.99781 * 180.20475 * 5 4 3 36 36 H 1.07995 * 119.99938 * 179.79229 * 6 5 4 37 37 H 1.08000 * 120.00105 * 179.97438 * 7 6 5 38 38 H 1.08000 * 119.99914 * 359.97438 * 8 3 2 39 39 H 1.09000 * 117.51081 * 145.03243 * 9 2 1 40 40 H 1.09000 * 117.49132 * 0.02562 * 9 2 1 41 41 H 1.08999 * 109.58529 * 353.37027 * 15 14 12 42 42 H 1.08992 * 109.58418 * 113.79581 * 15 14 12 43 43 H 1.08993 * 109.50349 * 65.31595 * 16 15 14 44 44 H 1.09001 * 109.49486 * 185.38416 * 16 15 14 45 45 H 1.09001 * 109.45776 * 181.38872 * 17 16 15 46 46 H 1.08996 * 109.46140 * 301.36159 * 17 16 15 47 47 H 1.09000 * 109.49741 * 58.58435 * 18 17 16 48 48 H 1.09001 * 109.49538 * 178.68345 * 18 17 16 49 49 H 1.09002 * 109.47615 * 47.11863 * 21 19 14 50 50 H 1.09008 * 109.47192 * 167.11712 * 21 19 14 51 51 H 0.97004 * 120.00026 * 4.72637 * 22 21 19 52 52 H 0.96995 * 120.00179 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1802 1.3595 0.0000 4 6 2.2856 2.0753 1.1779 5 6 2.8855 3.3207 1.1786 6 6 3.3723 3.8540 -0.0001 7 6 3.2627 3.1403 -1.1790 8 6 2.6662 1.8932 -1.1789 9 6 2.2368 -1.1219 -0.7650 10 6 2.2366 -1.1210 0.7650 11 1 1.6113 -1.8583 1.2686 12 6 3.5293 -0.7811 1.4608 13 8 4.5068 -0.4781 0.8100 14 7 3.6007 -0.8192 2.8061 15 6 2.4566 -1.2813 3.6038 16 6 2.1177 -0.2109 4.6459 17 6 3.3684 0.1093 5.4677 18 6 4.4589 0.6606 4.5463 19 6 4.8264 -0.4052 3.5027 20 1 5.2738 -1.2668 3.9983 21 6 5.8162 0.1813 2.4943 22 7 6.3808 -0.8976 1.6799 23 6 7.3669 -0.6245 0.7699 24 1 7.7858 0.3692 0.7094 25 6 7.8282 -1.6247 -0.0749 26 7 7.2460 -2.8052 -0.0766 27 14 9.2752 -1.2954 -1.2094 28 1 10.4946 -1.0506 -0.3981 29 1 9.4932 -2.4726 -2.0880 30 1 8.9879 -0.1012 -2.0442 31 1 -0.3634 0.0772 1.0247 32 1 -0.3633 0.8488 -0.5793 33 1 -0.3633 -0.9262 -0.4455 34 1 1.9015 1.6604 2.0982 35 1 2.9708 3.8785 2.0994 36 1 3.8380 4.8284 -0.0002 37 1 3.6427 3.5571 -2.1000 38 1 2.5804 1.3357 -2.0999 39 1 3.1720 -0.8765 -1.2683 40 1 1.6114 -1.8592 -1.2683 41 1 1.5978 -1.4417 2.9521 42 1 2.7148 -2.2128 4.1074 43 1 1.7728 0.6917 4.1416 44 1 1.3332 -0.5813 5.3059 45 1 3.1238 0.8529 6.2263 46 1 3.7272 -0.7989 5.9519 47 1 4.0920 1.5550 4.0428 48 1 5.3412 0.9103 5.1357 49 1 5.2994 0.8915 1.8488 50 1 6.6183 0.6919 3.0273 51 1 6.0560 -1.8056 1.7852 52 1 7.5685 -3.5042 -0.6666 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280446810.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:02 Heat of formation + Delta-G solvation = 66.710854 kcal Electronic energy + Delta-G solvation = -32660.653565 eV Core-core repulsion = 28820.581547 eV Total energy + Delta-G solvation = -3840.072018 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.45368 -39.05774 -37.37490 -36.11926 -34.17428 -32.41176 -31.84293 -30.64905 -30.38837 -29.68459 -28.52180 -26.12683 -24.41019 -23.82389 -22.93313 -22.58157 -22.08894 -20.80458 -20.32694 -19.51231 -18.18157 -17.21945 -16.55352 -16.14067 -15.50736 -14.85954 -14.74565 -14.62317 -14.40444 -14.32824 -14.24381 -13.90232 -13.49519 -13.33490 -13.17410 -13.02295 -12.89240 -12.74079 -12.41944 -12.31606 -12.12301 -12.05237 -11.97190 -11.59723 -11.40080 -11.00217 -10.92604 -10.82852 -10.79449 -10.66137 -10.61415 -10.45903 -10.24804 -10.05133 -9.80288 -9.68117 -9.41799 -8.62242 -8.54512 -8.46692 -8.16804 -7.85898 -6.38275 -5.44242 -2.63520 1.62281 1.69329 3.22712 3.50172 3.60126 3.63357 3.64954 4.04826 4.15657 4.67737 4.78852 4.82098 4.90470 4.95496 5.00389 5.06163 5.16516 5.20873 5.22040 5.26427 5.34909 5.37813 5.49757 5.60174 5.65368 5.68950 5.70020 5.73558 5.86807 5.88884 5.89199 5.92427 5.92572 6.00219 6.04561 6.07936 6.12858 6.14242 6.25539 6.29261 6.29520 6.43583 6.50138 6.64354 6.73517 6.76608 6.81687 6.87678 7.07069 7.26622 7.42544 7.95770 8.14595 8.73897 9.20059 9.84549 10.46798 10.81982 11.79363 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008709 B = 0.005449 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.175194 B = 5137.485601 C = 6286.030304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.073 4.073 3 C -0.036 4.036 4 C -0.101 4.101 5 C -0.120 4.120 6 C -0.122 4.122 7 C -0.118 4.118 8 C -0.099 4.099 9 C -0.134 4.134 10 C -0.169 4.169 11 H 0.112 0.888 12 C 0.503 3.497 13 O -0.426 6.426 14 N -0.613 5.613 15 C 0.111 3.889 16 C -0.133 4.133 17 C -0.117 4.117 18 C -0.126 4.126 19 C 0.145 3.855 20 H 0.064 0.936 21 C 0.163 3.837 22 N -0.693 5.693 23 C -0.203 4.203 24 H 0.061 0.939 25 C -0.020 4.020 26 N -0.936 5.936 27 Si 0.896 3.104 28 H -0.292 1.292 29 H -0.295 1.295 30 H -0.290 1.290 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.038 0.962 50 H 0.010 0.990 51 H 0.379 0.621 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.143 8.136 7.208 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.074 4.074 3 C -0.036 4.036 4 C -0.119 4.119 5 C -0.138 4.138 6 C -0.141 4.141 7 C -0.136 4.136 8 C -0.117 4.117 9 C -0.171 4.171 10 C -0.190 4.190 11 H 0.129 0.871 12 C 0.288 3.712 13 O -0.293 6.293 14 N -0.351 5.351 15 C -0.013 4.013 16 C -0.171 4.171 17 C -0.154 4.154 18 C -0.165 4.165 19 C 0.042 3.958 20 H 0.082 0.918 21 C 0.036 3.964 22 N -0.336 5.336 23 C -0.335 4.335 24 H 0.079 0.921 25 C -0.215 4.215 26 N -0.586 5.586 27 Si 0.729 3.271 28 H -0.220 1.220 29 H -0.221 1.221 30 H -0.217 1.217 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.056 0.944 50 H 0.027 0.973 51 H 0.212 0.788 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -17.449 8.404 6.678 20.487 hybrid contribution 0.675 -0.381 -0.488 0.916 sum -16.775 8.024 6.189 19.598 Atomic orbital electron populations 1.21317 0.91176 1.02120 1.01865 1.20171 0.93908 0.88115 1.05196 1.18846 0.98002 0.93308 0.93435 1.20817 0.99435 0.94496 0.97165 1.20985 0.99092 0.95951 0.97749 1.21044 1.00149 0.99884 0.92976 1.21052 0.99348 0.95101 0.98109 1.20917 0.97736 0.95293 0.97756 1.23189 1.02798 0.98711 0.92393 1.22520 0.98643 1.01936 0.95950 0.87051 1.19431 0.88577 0.81242 0.81999 1.91244 1.32611 1.41183 1.64253 1.47772 1.14051 1.68088 1.05221 1.21590 0.89582 0.96400 0.93680 1.21913 0.97745 0.99588 0.97847 1.21486 0.95438 1.00909 0.97588 1.21975 0.98645 0.98784 0.97109 1.21497 0.85014 0.96177 0.93156 0.91769 1.20810 0.91897 0.92986 0.90723 1.42167 1.42948 1.05201 1.43249 1.19063 1.08898 0.95255 1.10309 0.92134 1.24566 1.00241 0.96701 0.99984 1.69678 1.42890 1.03534 1.42541 0.86394 0.83269 0.76459 0.80946 1.21953 1.22096 1.21692 0.92225 0.91909 0.92043 0.86868 0.86685 0.86651 0.86453 0.86372 0.86906 0.88399 0.90217 0.92269 0.91800 0.91484 0.92240 0.91985 0.91679 0.91207 0.94439 0.97251 0.78795 0.94272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.84 37.16 0.37 -0.71 16 2 C -0.07 -0.98 2.19 -155.62 -0.34 -1.32 16 3 C -0.04 -0.54 4.09 -104.63 -0.43 -0.96 16 4 C -0.10 -1.45 8.89 -39.58 -0.35 -1.80 16 5 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 6 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 7 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 8 C -0.10 -1.52 9.32 -39.58 -0.37 -1.89 16 9 C -0.13 -2.05 9.00 -26.69 -0.24 -2.29 16 10 C -0.17 -2.56 4.88 -91.78 -0.45 -3.01 16 11 H 0.11 1.42 6.50 -51.93 -0.34 1.08 16 12 C 0.50 9.42 5.56 -10.99 -0.06 9.36 16 13 O -0.43 -10.22 9.70 5.56 0.05 -10.17 16 14 N -0.61 -9.84 2.97 -164.97 -0.49 -10.33 16 15 C 0.11 1.32 6.33 -3.71 -0.02 1.29 16 16 C -0.13 -1.30 6.08 -26.61 -0.16 -1.46 16 17 C -0.12 -1.22 5.88 -26.69 -0.16 -1.38 16 18 C -0.13 -1.67 5.37 -26.39 -0.14 -1.81 16 19 C 0.14 2.50 2.92 -67.38 -0.20 2.30 16 20 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 21 C 0.16 3.62 4.89 -4.05 -0.02 3.60 16 22 N -0.69 -18.81 3.18 -59.91 -0.19 -19.00 16 23 C -0.20 -6.13 9.70 -15.06 -0.15 -6.27 16 24 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 25 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 26 N -0.94 -30.10 13.08 55.49 0.73 -29.38 16 27 Si 0.90 24.15 29.56 -169.99 -5.02 19.12 16 28 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 29 H -0.29 -7.96 7.11 56.52 0.40 -7.56 16 30 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 34 H 0.11 1.52 7.55 -52.48 -0.40 1.12 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.12 1.71 7.92 -52.49 -0.42 1.29 16 39 H 0.11 2.15 7.53 -51.93 -0.39 1.76 16 40 H 0.10 1.25 8.05 -51.93 -0.42 0.83 16 41 H 0.08 0.84 5.50 -51.93 -0.29 0.55 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.65 7.63 -51.93 -0.40 0.25 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 49 H 0.04 0.92 6.36 -51.93 -0.33 0.59 16 50 H 0.01 0.22 8.10 -51.92 -0.42 -0.20 16 51 H 0.38 11.00 7.28 -40.82 -0.30 10.71 16 52 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 404.25 15.07 6.09 6.09 Total: -1.00 -35.14 404.25 -11.56 -46.69 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -8.71 Total: 10.31 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -4.01 Total: -13.34 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.05 Total: -58.71 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.05 Total: -10.17 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.02 Total: 19.12 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.14 -11.56 -46.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280446810.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.403 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds