Wall clock time and date at job start Wed Apr 1 2020 02:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 115.54515 * 2 1 4 4 C 1.38242 * 119.99927 * 64.86717 * 3 2 1 5 5 C 1.38234 * 119.99856 * 179.74263 * 4 3 2 6 6 C 1.38238 * 120.00090 * 0.55073 * 5 4 3 7 7 C 1.38238 * 119.99711 * 359.70308 * 6 5 4 8 8 C 1.38232 * 120.00136 * 0.02562 * 7 6 5 9 9 C 1.52989 * 117.49953 * 214.29775 * 2 1 3 10 10 C 1.52994 * 117.49949 * 145.66955 * 2 1 3 11 11 H 1.08994 * 117.49992 * 0.02562 * 10 2 1 12 12 C 1.50703 * 117.49769 * 215.00238 * 10 2 1 13 13 O 1.21277 * 119.99996 * 283.98274 * 12 10 2 14 14 N 1.34779 * 119.99655 * 103.98185 * 12 10 2 15 15 C 1.46917 * 120.63038 * 359.72477 * 14 12 10 16 16 C 1.52762 * 109.00558 * 233.58111 * 15 14 12 17 17 C 1.53041 * 109.38440 * 305.58757 * 16 15 14 18 18 C 1.52997 * 109.46178 * 181.26023 * 17 16 15 19 19 N 1.46499 * 109.44985 * 301.22877 * 17 16 15 20 20 C 1.36942 * 119.99810 * 300.05769 * 19 17 16 21 21 H 1.08000 * 120.00288 * 0.02562 * 20 19 17 22 22 C 1.38820 * 119.99881 * 179.97438 * 20 19 17 23 23 N 1.31621 * 119.99731 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 119.99942 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46868 * 89.99887 * 24 22 20 26 26 H 1.48504 * 109.47119 * 209.99736 * 24 22 20 27 27 H 1.48502 * 109.47381 * 330.00266 * 24 22 20 28 28 C 1.53037 * 109.53584 * 61.24015 * 17 16 15 29 29 C 1.46931 * 120.62657 * 179.97438 * 14 12 10 30 30 H 1.08993 * 109.47230 * 274.32438 * 1 2 3 31 31 H 1.09008 * 109.46904 * 154.32768 * 1 2 3 32 32 H 1.08999 * 109.47249 * 34.32826 * 1 2 3 33 33 H 1.08002 * 120.00027 * 359.97438 * 4 3 2 34 34 H 1.08001 * 120.00062 * 180.27660 * 5 4 3 35 35 H 1.08001 * 120.00063 * 179.72697 * 6 5 4 36 36 H 1.08006 * 119.99749 * 180.02562 * 7 6 5 37 37 H 1.08001 * 120.00056 * 179.97438 * 8 7 6 38 38 H 1.09001 * 117.50344 * 359.97438 * 9 2 1 39 39 H 1.09004 * 117.49929 * 145.01948 * 9 2 1 40 40 H 1.08997 * 109.58920 * 353.41336 * 15 14 12 41 41 H 1.09006 * 109.58932 * 113.84389 * 15 14 12 42 42 H 1.09004 * 109.56528 * 185.55537 * 16 15 14 43 43 H 1.08998 * 109.36606 * 65.50138 * 16 15 14 44 44 H 1.08996 * 109.47444 * 299.93111 * 18 17 16 45 45 H 1.09003 * 109.47354 * 59.93174 * 18 17 16 46 46 H 1.09000 * 109.47129 * 179.97438 * 18 17 16 47 47 H 0.96999 * 119.99985 * 120.06005 * 19 17 16 48 48 H 0.96998 * 119.99681 * 180.02562 * 23 22 20 49 49 H 1.09007 * 109.50018 * 178.68379 * 28 17 16 50 50 H 1.08994 * 109.49795 * 58.58776 * 28 17 16 51 51 H 1.08999 * 109.58825 * 246.15728 * 29 14 12 52 52 H 1.08995 * 109.58792 * 6.58563 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 6 2.0192 2.2026 1.0839 5 6 2.6197 3.4477 1.0862 6 6 3.3715 3.8545 -0.0003 7 6 3.5278 3.0136 -1.0863 8 6 2.9320 1.7663 -1.0862 9 6 2.2365 -1.1211 -0.7647 10 6 2.2365 -1.1207 0.7653 11 1 1.6113 -1.8582 1.2685 12 6 3.5290 -0.7804 1.4615 13 8 4.5489 -0.6520 0.8179 14 7 3.5516 -0.6188 2.7994 15 6 2.3231 -0.7652 3.5918 16 6 2.1274 0.4886 4.4423 17 6 3.3868 0.7393 5.2749 18 6 3.1808 1.9768 6.1508 19 7 3.6479 -0.4236 6.1267 20 6 2.7152 -0.8215 7.0470 21 1 1.7868 -0.2783 7.1445 22 6 2.9624 -1.9238 7.8538 23 7 2.0656 -2.3065 8.7379 24 14 4.5677 -2.8637 7.6846 25 1 5.5822 -2.2792 8.5982 26 1 4.3464 -4.2891 8.0378 27 1 5.0510 -2.7701 6.2836 28 6 4.5793 0.9669 4.3432 29 6 4.8041 -0.2874 3.4923 30 1 -0.3633 0.0775 1.0247 31 1 -0.3633 -0.9263 -0.4452 32 1 -0.3634 0.8486 -0.5795 33 1 1.4276 1.8868 1.9305 34 1 2.4978 4.1044 1.9348 35 1 3.8370 4.8290 -0.0003 36 1 4.1156 3.3313 -1.9350 37 1 3.0538 1.1096 -1.9349 38 1 1.6113 -1.8590 -1.2675 39 1 3.1716 -0.8753 -1.2681 40 1 1.4703 -0.8891 2.9244 41 1 2.4097 -1.6351 4.2429 42 1 1.2741 0.3498 5.1062 43 1 1.9463 1.3430 3.7902 44 1 2.9870 2.8422 5.5172 45 1 2.3314 1.8149 6.8145 46 1 4.0775 2.1552 6.7442 47 1 4.4816 -0.9117 6.0389 48 1 2.2385 -3.0765 9.3019 49 1 5.4713 1.1686 4.9365 50 1 4.3752 1.8168 3.6920 51 1 5.0968 -1.1177 4.1351 52 1 5.5878 -0.0963 2.7593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281507847.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:54 Heat of formation + Delta-G solvation = 29.921143 kcal Electronic energy + Delta-G solvation = -32073.278203 eV Core-core repulsion = 28231.610864 eV Total energy + Delta-G solvation = -3841.667339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.70061 -39.27249 -38.08658 -36.66557 -34.53073 -32.33596 -31.02906 -30.99049 -30.58358 -29.73656 -28.78990 -27.82561 -24.74107 -23.52049 -23.23125 -22.94887 -22.50711 -21.79241 -19.91382 -19.20395 -17.98133 -17.80992 -17.23467 -16.64546 -15.64896 -15.29029 -14.97699 -14.81052 -14.54872 -14.34995 -14.23415 -14.08334 -13.70648 -13.43982 -13.35898 -13.18098 -12.98007 -12.81554 -12.68678 -12.54055 -12.30470 -12.15519 -11.89762 -11.80177 -11.38430 -11.26752 -11.17907 -11.12689 -11.01168 -10.85596 -10.77517 -10.48039 -10.36643 -10.18607 -10.06375 -9.79103 -9.50954 -9.45383 -8.97458 -8.90847 -8.70939 -8.24241 -7.28596 -5.79800 -3.14808 1.30915 1.40915 2.67956 3.21901 3.34269 3.37675 3.43823 3.64990 3.79988 4.37970 4.55631 4.56349 4.64425 4.80782 4.90358 4.98285 5.05532 5.06950 5.14897 5.21412 5.31389 5.40296 5.46660 5.47937 5.52582 5.54545 5.61893 5.64284 5.64842 5.68246 5.71302 5.89822 5.94481 5.96039 5.97830 6.03455 6.05990 6.10532 6.18518 6.32369 6.37840 6.43178 6.45904 6.49171 6.54331 6.58982 6.68799 6.74055 6.97681 6.98069 7.01652 7.75156 7.96297 8.39759 8.45194 9.17907 9.91075 10.11224 11.38432 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014805 B = 0.003824 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.759943 B = 7319.951862 C = 7814.176638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.064 4.064 3 C -0.048 4.048 4 C -0.101 4.101 5 C -0.119 4.119 6 C -0.122 4.122 7 C -0.122 4.122 8 C -0.101 4.101 9 C -0.139 4.139 10 C -0.174 4.174 11 H 0.127 0.873 12 C 0.546 3.454 13 O -0.551 6.551 14 N -0.595 5.595 15 C 0.116 3.884 16 C -0.133 4.133 17 C 0.206 3.794 18 C -0.149 4.149 19 N -0.742 5.742 20 C -0.235 4.235 21 H 0.092 0.908 22 C 0.006 3.994 23 N -0.934 5.934 24 Si 0.878 3.122 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.278 1.278 28 C -0.131 4.131 29 C 0.116 3.884 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.037 0.963 45 H 0.061 0.939 46 H 0.049 0.951 47 H 0.360 0.640 48 H 0.258 0.742 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.626 8.869 -19.594 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.064 4.064 3 C -0.048 4.048 4 C -0.119 4.119 5 C -0.137 4.137 6 C -0.140 4.140 7 C -0.140 4.140 8 C -0.119 4.119 9 C -0.177 4.177 10 C -0.195 4.195 11 H 0.144 0.856 12 C 0.334 3.666 13 O -0.429 6.429 14 N -0.327 5.327 15 C -0.007 4.007 16 C -0.173 4.173 17 C 0.115 3.885 18 C -0.208 4.208 19 N -0.386 5.386 20 C -0.365 4.365 21 H 0.110 0.890 22 C -0.189 4.189 23 N -0.582 5.582 24 Si 0.709 3.291 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.205 1.205 28 C -0.170 4.170 29 C -0.006 4.006 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.194 0.806 48 H 0.069 0.931 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.085 0.915 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.285 8.897 -19.756 21.705 hybrid contribution 1.128 -0.892 0.347 1.479 sum -0.157 8.005 -19.409 20.995 Atomic orbital electron populations 1.21372 0.90508 1.02426 1.02652 1.20196 0.94587 0.87876 1.03780 1.18926 0.97785 0.93475 0.94628 1.20996 0.99557 0.93771 0.97613 1.21104 0.97834 0.96411 0.98323 1.21121 0.99186 0.99646 0.94058 1.21069 0.99966 0.94385 0.98605 1.20948 0.96894 0.96064 0.98024 1.23205 1.02750 0.99624 0.92072 1.22452 0.98207 1.03192 0.95656 0.85551 1.19439 0.88970 0.76414 0.81758 1.90633 1.34896 1.52282 1.65122 1.47963 1.10342 1.68584 1.05766 1.21647 0.84878 1.00409 0.93735 1.22219 1.00758 0.96168 0.98115 1.19466 0.91736 0.88177 0.89150 1.22181 1.02250 0.96649 0.99736 1.42893 1.20347 1.32200 1.43170 1.18962 0.98357 1.09348 1.09837 0.89024 1.24618 0.97275 0.98573 0.98453 1.69688 1.34575 1.28541 1.25379 0.86663 0.85025 0.79899 0.77502 1.21229 1.21940 1.20462 1.22125 0.99490 0.97422 0.97932 1.21525 0.86233 0.97427 0.95417 0.91525 0.91758 0.91603 0.86020 0.86126 0.86406 0.86356 0.86277 0.87763 0.87403 0.91078 0.89683 0.90196 0.93071 0.94419 0.92024 0.93223 0.80617 0.93144 0.91015 0.91462 0.91483 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.76 37.16 0.36 -0.60 16 2 C -0.06 -0.68 2.29 -155.67 -0.36 -1.04 16 3 C -0.05 -0.58 4.11 -104.62 -0.43 -1.01 16 4 C -0.10 -1.22 9.64 -39.58 -0.38 -1.61 16 5 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 6 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 7 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 8 C -0.10 -1.19 9.23 -39.59 -0.37 -1.56 16 9 C -0.14 -1.49 8.88 -26.74 -0.24 -1.73 16 10 C -0.17 -2.16 4.43 -91.77 -0.41 -2.57 16 11 H 0.13 1.41 7.22 -51.93 -0.37 1.04 16 12 C 0.55 8.67 6.47 -10.98 -0.07 8.60 16 13 O -0.55 -10.30 15.70 5.56 0.09 -10.21 16 14 N -0.59 -9.44 2.98 -173.01 -0.52 -9.96 16 15 C 0.12 1.80 6.03 -3.94 -0.02 1.77 16 16 C -0.13 -2.10 4.69 -26.83 -0.13 -2.23 16 17 C 0.21 3.56 0.74 -131.78 -0.10 3.46 16 18 C -0.15 -2.51 8.44 37.16 0.31 -2.19 16 19 N -0.74 -15.81 3.94 -47.19 -0.19 -16.00 16 20 C -0.24 -6.00 9.16 -15.05 -0.14 -6.14 16 21 H 0.09 2.51 6.93 -52.49 -0.36 2.15 16 22 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 23 N -0.93 -28.07 13.97 55.49 0.78 -27.29 16 24 Si 0.88 21.44 27.74 -169.99 -4.71 16.73 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 28 C -0.13 -2.03 4.96 -26.59 -0.13 -2.16 16 29 C 0.12 1.91 6.16 -3.69 -0.02 1.89 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.46 7.90 -51.92 -0.41 0.05 16 32 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.12 1.44 6.57 -52.49 -0.34 1.09 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.12 1.26 7.00 -52.49 -0.37 0.89 16 38 H 0.10 0.86 8.05 -51.93 -0.42 0.45 16 39 H 0.11 1.30 6.67 -51.93 -0.35 0.95 16 40 H 0.07 0.94 5.85 -51.93 -0.30 0.63 16 41 H 0.08 1.57 7.74 -51.93 -0.40 1.17 16 42 H 0.08 1.39 7.31 -51.93 -0.38 1.01 16 43 H 0.05 0.72 6.66 -51.93 -0.35 0.37 16 44 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 1.15 7.27 -51.93 -0.38 0.77 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.36 7.84 4.32 -40.82 -0.18 7.67 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.07 1.19 6.94 -51.93 -0.36 0.83 16 52 H 0.08 1.39 7.00 -51.93 -0.36 1.02 16 LS Contribution 400.39 15.07 6.03 6.03 Total: -1.00 -31.09 400.39 -10.22 -41.32 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -8.30 Total: 11.61 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -3.40 Total: -12.23 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.07 Total: -53.25 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.73 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.09 -10.22 -41.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281507847.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.238 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds