Wall clock time and date at job start Wed Apr 1 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47238 * 2 1 4 4 C 1.38232 * 120.00379 * 269.73333 * 3 2 1 5 5 C 1.38234 * 120.00072 * 179.76471 * 4 3 2 6 6 C 1.38234 * 120.00004 * 0.48555 * 5 4 3 7 7 C 1.50701 * 120.00144 * 179.76714 * 6 5 4 8 8 C 1.52996 * 109.47014 * 270.02180 * 7 6 5 9 9 C 1.50701 * 109.47014 * 180.02562 * 8 7 6 10 10 O 1.21287 * 120.00147 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00291 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00314 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47037 * 179.97438 * 12 11 9 14 14 H 1.08998 * 115.51933 * 330.40666 * 13 12 11 15 15 C 1.53003 * 117.44185 * 184.99504 * 13 12 11 16 16 H 1.09000 * 119.53728 * 4.11843 * 15 13 12 17 17 C 1.54390 * 118.12481 * 160.80436 * 15 13 12 18 18 N 1.48151 * 104.61090 * 87.19263 * 17 15 13 19 19 C 1.36938 * 127.83127 * 140.39666 * 18 17 15 20 20 H 1.07998 * 119.99696 * 195.59104 * 19 18 17 21 21 C 1.38807 * 120.00512 * 15.59397 * 19 18 17 22 22 N 1.31617 * 119.99879 * 9.09737 * 21 19 18 23 23 Si 1.86796 * 120.00194 * 189.09253 * 21 19 18 24 24 H 1.48500 * 109.47013 * 90.00439 * 23 21 19 25 25 H 1.48500 * 109.47376 * 210.00141 * 23 21 19 26 26 H 1.48499 * 109.47270 * 330.00189 * 23 21 19 27 27 C 1.48147 * 104.32598 * 320.41569 * 18 17 15 28 28 C 1.52996 * 117.44206 * 115.75758 * 13 12 11 29 29 H 1.08997 * 119.54331 * 355.88132 * 28 13 12 30 30 C 1.38241 * 119.99972 * 359.78939 * 6 5 4 31 31 C 1.38236 * 119.99521 * 90.00518 * 3 2 1 32 32 H 1.09004 * 109.47184 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46912 * 299.99454 * 1 2 3 34 34 H 1.09000 * 109.47440 * 59.99193 * 1 2 3 35 35 H 1.09007 * 109.47029 * 240.00686 * 2 1 3 36 36 H 1.09000 * 109.47440 * 120.00807 * 2 1 3 37 37 H 1.08001 * 120.00055 * 359.97438 * 4 3 2 38 38 H 1.07993 * 120.00071 * 180.24773 * 5 4 3 39 39 H 1.08995 * 109.46924 * 30.02101 * 7 6 5 40 40 H 1.08998 * 109.47103 * 150.01959 * 7 6 5 41 41 H 1.09007 * 109.47150 * 299.99345 * 8 7 6 42 42 H 1.08998 * 109.47366 * 59.99940 * 8 7 6 43 43 H 0.96996 * 119.99668 * 359.97438 * 11 9 8 44 44 H 1.09003 * 109.46430 * 299.99963 * 12 11 9 45 45 H 1.08998 * 109.47356 * 59.99562 * 12 11 9 46 46 H 1.08993 * 110.41017 * 205.97567 * 17 15 13 47 47 H 1.08997 * 110.40473 * 328.41325 * 17 15 13 48 48 H 0.96997 * 120.00470 * 179.97438 * 22 21 19 49 49 H 1.09004 * 110.40577 * 280.79897 * 27 18 17 50 50 H 1.09007 * 110.50328 * 158.42131 * 27 18 17 51 51 H 1.08002 * 119.99925 * 179.97438 * 30 6 5 52 52 H 1.07991 * 120.00356 * 359.97438 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2680 2.0707 -1.1971 5 6 2.7242 3.3756 -1.1970 6 6 2.9543 4.0273 0.0001 7 6 3.4566 5.4481 0.0002 8 6 4.9865 5.4481 0.0001 9 6 5.4888 6.8689 0.0008 10 8 4.7007 7.7908 0.0018 11 7 6.8139 7.1153 0.0013 12 6 7.3022 8.4965 0.0026 13 6 8.8322 8.4965 0.0036 14 1 9.3015 7.6409 0.4891 15 6 9.5372 9.8491 0.1233 16 1 8.9453 10.7525 0.2708 17 6 11.0135 9.8629 0.5749 18 7 11.7888 9.6988 -0.6769 19 6 12.9559 10.3222 -1.0299 20 1 13.2852 10.3093 -2.0583 21 6 13.7156 10.9705 -0.0659 22 7 13.4147 10.8373 1.2084 23 14 15.1651 12.0320 -0.5773 24 1 14.7044 13.4268 -0.7959 25 1 16.1946 12.0128 0.4926 26 1 15.7484 11.5005 -1.8352 27 6 11.0149 8.7076 -1.4601 28 6 9.5381 9.0874 -1.2184 29 1 8.9470 9.4233 -2.0703 30 6 2.7240 3.3755 1.1973 31 6 2.2628 2.0723 1.1972 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 2.0925 1.5600 -2.1324 38 1 2.9045 3.8846 -2.1322 39 1 3.0932 5.9620 -0.8897 40 1 3.0933 5.9619 0.8902 41 1 5.3500 4.9343 0.8901 42 1 5.3498 4.9344 -0.8899 43 1 7.4443 6.3781 0.0016 44 1 6.9391 9.0110 -0.8871 45 1 6.9386 9.0097 0.8929 46 1 11.2566 10.8129 1.0507 47 1 11.2105 9.0346 1.2554 48 1 13.9458 11.2900 1.8821 49 1 11.2122 7.6988 -1.0973 50 1 11.2586 8.7841 -2.5198 51 1 2.9042 3.8846 2.1327 52 1 2.0825 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282885650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:44 Heat of formation + Delta-G solvation = 21.027266 kcal Electronic energy + Delta-G solvation = -27636.381597 eV Core-core repulsion = 23794.328590 eV Total energy + Delta-G solvation = -3842.053007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.14962 -39.59511 -38.72221 -35.55505 -34.93057 -33.35560 -32.79900 -31.23917 -30.88926 -29.36225 -27.39032 -27.12292 -25.46194 -24.42790 -23.05373 -22.78900 -21.15619 -20.86370 -20.54490 -19.68709 -19.25890 -17.31882 -16.82221 -16.36036 -16.28759 -15.97444 -15.52930 -15.39609 -14.82037 -14.37514 -14.31079 -14.12564 -13.98856 -13.74001 -13.60025 -13.50061 -13.34368 -12.93977 -12.72372 -12.65423 -12.57388 -12.16207 -11.85736 -11.83055 -11.75523 -11.33849 -11.27104 -11.13629 -11.11125 -11.07540 -10.85357 -10.65963 -10.32339 -10.13978 -10.01871 -9.75457 -9.41618 -9.23064 -9.14433 -8.94579 -8.81002 -8.65034 -6.88469 -5.81364 -3.15815 0.99406 1.09478 2.57809 3.09194 3.37370 3.42666 3.44139 3.44473 4.12310 4.32712 4.42115 4.44821 4.49606 4.67211 4.69080 4.75546 4.88383 4.89433 4.92216 5.00325 5.10958 5.18138 5.19437 5.27861 5.32255 5.38469 5.44264 5.46267 5.50155 5.51150 5.56291 5.66988 5.77059 5.78949 5.80376 5.88667 5.90728 5.91567 5.96222 6.11477 6.21408 6.29326 6.34974 6.36331 6.54839 6.64928 6.69555 6.70177 6.90322 7.34043 7.45793 7.51631 7.70304 8.16395 8.19462 9.09513 9.72295 10.49291 11.32976 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.031312 B = 0.001358 C = 0.001343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.001266 B =20608.710018 C =20843.892973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.088 4.088 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.085 4.085 7 C -0.065 4.065 8 C -0.134 4.134 9 C 0.510 3.490 10 O -0.546 6.546 11 N -0.725 5.725 12 C 0.154 3.846 13 C -0.150 4.150 14 H 0.102 0.898 15 C -0.162 4.162 16 H 0.103 0.897 17 C 0.184 3.816 18 N -0.594 5.594 19 C -0.228 4.228 20 H 0.077 0.923 21 C -0.005 4.005 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.154 3.846 28 C -0.172 4.172 29 H 0.102 0.898 30 C -0.113 4.113 31 C -0.117 4.117 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.402 0.598 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.023 0.977 48 H 0.254 0.746 49 H 0.024 0.976 50 H 0.049 0.951 51 H 0.122 0.878 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.504 -20.408 -1.492 31.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.088 4.088 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.085 4.085 7 C -0.102 4.102 8 C -0.174 4.174 9 C 0.296 3.704 10 O -0.423 6.423 11 N -0.376 5.376 12 C 0.031 3.969 13 C -0.169 4.169 14 H 0.120 0.880 15 C -0.183 4.183 16 H 0.121 0.879 17 C 0.058 3.942 18 N -0.318 5.318 19 C -0.356 4.356 20 H 0.094 0.906 21 C -0.202 4.202 22 N -0.562 5.562 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.028 3.972 28 C -0.192 4.192 29 H 0.120 0.880 30 C -0.131 4.131 31 C -0.135 4.135 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.236 0.764 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.108 0.892 47 H 0.041 0.959 48 H 0.065 0.935 49 H 0.041 0.959 50 H 0.068 0.932 51 H 0.140 0.860 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.805 -19.580 -1.411 31.632 hybrid contribution 1.083 0.223 -0.213 1.126 sum -23.721 -19.357 -1.624 30.660 Atomic orbital electron populations 1.21748 0.94732 1.01684 1.02246 1.20546 0.96188 0.92729 1.02818 1.19900 0.99380 0.96273 0.93268 1.21016 1.00043 0.94899 0.97497 1.21072 0.99553 0.94739 0.97705 1.19910 0.99358 0.96027 0.93210 1.20323 0.93216 0.92151 1.04557 1.21652 0.96917 0.94098 1.04763 1.20681 0.82243 0.91541 0.75938 1.90709 1.55338 1.46575 1.49715 1.46086 1.06995 1.09438 1.75108 1.20867 0.91866 0.82173 1.02033 1.22530 0.92039 0.99111 1.03203 0.87955 1.24242 0.99867 0.93049 1.01097 0.87898 1.21063 0.82751 1.01770 0.88584 1.45206 1.24173 1.45620 1.16782 1.19013 0.96196 1.27216 0.93217 0.90563 1.24889 0.98609 1.01576 0.95129 1.69893 1.41426 1.45913 0.98960 0.86110 0.81728 0.80459 0.77410 1.21474 1.21631 1.20536 1.21136 0.87612 0.92503 0.95976 1.23994 0.98363 1.05396 0.91411 0.87955 1.21077 0.99521 0.94761 0.97709 1.21016 1.00021 0.94917 0.97499 0.92421 0.92563 0.92558 0.91088 0.91084 0.86231 0.86004 0.90165 0.90152 0.88752 0.88746 0.76362 0.91498 0.91191 0.89181 0.95883 0.93544 0.95872 0.93204 0.85994 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 37.16 0.37 -0.34 16 2 C -0.09 -0.45 6.07 -27.88 -0.17 -0.62 16 3 C -0.09 -0.63 5.13 -104.62 -0.54 -1.17 16 4 C -0.12 -0.85 9.70 -39.58 -0.38 -1.23 16 5 C -0.11 -0.87 9.70 -39.58 -0.38 -1.26 16 6 C -0.08 -0.69 5.13 -104.62 -0.54 -1.23 16 7 C -0.06 -0.56 4.63 -27.88 -0.13 -0.69 16 8 C -0.13 -1.08 5.68 -27.88 -0.16 -1.24 16 9 C 0.51 5.94 7.83 -10.98 -0.09 5.86 16 10 O -0.55 -8.53 15.98 5.55 0.09 -8.44 16 11 N -0.72 -8.02 5.56 -60.29 -0.33 -8.35 16 12 C 0.15 2.05 5.95 -4.04 -0.02 2.03 16 13 C -0.15 -2.25 5.39 -90.62 -0.49 -2.74 16 14 H 0.10 1.52 8.04 -51.93 -0.42 1.10 16 15 C -0.16 -3.03 6.85 -89.22 -0.61 -3.64 16 16 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 17 C 0.18 4.38 5.70 -2.41 -0.01 4.36 16 18 N -0.59 -15.15 3.38 -168.85 -0.57 -15.72 16 19 C -0.23 -6.35 10.35 -15.06 -0.16 -6.50 16 20 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 21 C 0.00 -0.14 5.40 -17.43 -0.09 -0.23 16 22 N -0.92 -26.68 10.86 55.49 0.60 -26.08 16 23 Si 0.91 21.85 29.56 -169.99 -5.03 16.82 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 27 C 0.15 3.18 7.04 -2.41 -0.02 3.16 16 28 C -0.17 -2.99 6.74 -89.22 -0.60 -3.59 16 29 H 0.10 1.66 8.12 -51.93 -0.42 1.24 16 30 C -0.11 -0.87 9.70 -39.58 -0.38 -1.26 16 31 C -0.12 -0.85 9.70 -39.58 -0.38 -1.24 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.33 8.08 -51.92 -0.42 -0.09 16 36 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 37 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 40 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 41 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.40 3.51 8.40 -40.82 -0.34 3.16 16 44 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.09 2.41 6.51 -51.93 -0.34 2.07 16 47 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 51 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 52 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 424.35 15.07 6.39 6.39 Total: -1.00 -32.36 424.35 -12.71 -45.07 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -9.07 Total: 1.87 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -4.79 Total: -11.57 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.30 Total: -50.15 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -32.36 -12.71 -45.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282885650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.097 kcal (2) G-P(sol) polarization free energy of solvation -32.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds