Wall clock time and date at job start Wed Apr 1 2020 02:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38231 * 120.00113 * 2 1 4 4 C 1.38232 * 120.00047 * 179.97438 * 3 2 1 5 5 C 1.38234 * 119.99804 * 359.95521 * 4 3 2 6 6 C 1.50702 * 119.99738 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46940 * 90.00231 * 6 5 4 8 8 O 1.21285 * 119.99742 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00185 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00112 * 180.02562 * 9 7 6 11 11 C 1.52998 * 115.55128 * 180.02562 * 10 9 7 12 12 C 1.53037 * 109.46125 * 34.32395 * 11 10 9 13 13 C 1.53192 * 109.31435 * 178.61589 * 12 11 10 14 14 N 1.46920 * 108.77594 * 54.63629 * 13 12 11 15 15 C 1.36941 * 120.63091 * 126.36627 * 14 13 12 16 16 H 1.07996 * 120.00020 * 331.91607 * 15 14 13 17 17 C 1.38812 * 119.99995 * 151.91200 * 15 14 13 18 18 N 1.31621 * 119.99722 * 343.22679 * 17 15 14 19 19 Si 1.86797 * 120.00136 * 163.22713 * 17 15 14 20 20 H 1.48501 * 109.46972 * 60.00030 * 19 17 15 21 21 H 1.48503 * 109.47012 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47071 * 299.99984 * 19 17 15 23 23 C 1.46927 * 118.73991 * 306.64805 * 14 13 12 24 24 C 1.52764 * 109.01057 * 53.30243 * 23 14 13 25 25 C 1.53005 * 117.51679 * 325.69976 * 10 9 7 26 26 C 1.52999 * 60.00145 * 107.48350 * 25 10 9 27 27 C 1.38238 * 120.00046 * 0.27613 * 5 4 3 28 28 C 1.38227 * 119.99701 * 359.51491 * 27 5 4 29 29 H 1.09008 * 109.47238 * 90.00148 * 1 2 3 30 30 H 1.08999 * 109.47528 * 209.99615 * 1 2 3 31 31 H 1.09002 * 109.47336 * 330.00073 * 1 2 3 32 32 H 1.08000 * 119.99702 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.99685 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47614 * 330.00506 * 6 5 4 35 35 H 1.08996 * 109.47129 * 210.00206 * 6 5 4 36 36 H 0.96999 * 120.00288 * 0.02562 * 9 7 6 37 37 H 1.08997 * 109.45043 * 154.29501 * 11 10 9 38 38 H 1.09005 * 109.49265 * 58.66655 * 12 11 10 39 39 H 1.08999 * 109.49844 * 298.56993 * 12 11 10 40 40 H 1.09003 * 109.58911 * 294.85153 * 13 12 11 41 41 H 1.08998 * 109.58829 * 174.42593 * 13 12 11 42 42 H 0.97006 * 119.99968 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.59089 * 173.14400 * 23 14 13 44 44 H 1.09005 * 109.58342 * 293.56687 * 23 14 13 45 45 H 1.08996 * 109.56255 * 185.55796 * 24 23 14 46 46 H 1.09000 * 109.37698 * 65.51779 * 24 23 14 47 47 H 1.09004 * 117.49736 * 214.97460 * 25 10 9 48 48 H 1.08998 * 117.49858 * 359.97438 * 25 10 9 49 49 H 1.08995 * 117.49829 * 252.51509 * 26 25 10 50 50 H 1.08994 * 117.51853 * 107.48022 * 26 25 10 51 51 H 1.08001 * 119.99658 * 179.72390 * 27 5 4 52 52 H 1.08007 * 119.99709 * 180.25234 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2716 -0.0001 0.0020 6 6 5.7787 -0.0001 0.0020 7 6 6.2809 0.0016 1.4229 8 8 5.4927 0.0022 2.3447 9 7 7.6060 0.0014 1.6692 10 6 8.0942 0.0024 3.0504 11 6 9.6156 0.0027 3.2126 12 6 10.2488 0.8155 2.0810 13 6 11.7693 0.8425 2.2660 14 7 12.2585 -0.5395 2.3630 15 6 13.2591 -0.9848 1.5410 16 1 13.3915 -0.5442 0.5639 17 6 14.1033 -2.0024 1.9636 18 7 14.1706 -2.3139 3.2407 19 14 15.1437 -2.9298 0.7200 20 1 16.0480 -1.9793 0.0242 21 1 15.9519 -3.9599 1.4208 22 1 14.2580 -3.5880 -0.2738 23 6 11.6493 -1.4366 3.3545 24 6 10.1340 -1.4363 3.1611 25 6 7.2732 0.7683 4.0899 26 6 7.2727 -0.7616 4.0908 27 6 3.5804 -1.1972 -0.0028 28 6 2.1981 -1.1971 0.0010 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1324 0.0001 34 1 6.1421 0.8893 -0.5128 35 1 6.1420 -0.8907 -0.5107 36 1 8.2364 0.0005 0.9320 37 1 9.8784 0.4492 4.1715 38 1 9.8614 1.8341 2.1040 39 1 10.0070 0.3553 1.1230 40 1 12.0168 1.3826 3.1799 41 1 12.2327 1.3350 1.4112 42 1 14.7608 -3.0248 3.5361 43 1 12.0337 -2.4474 3.2176 44 1 11.8868 -1.0860 4.3589 45 1 9.6650 -2.0205 3.9528 46 1 9.8928 -1.8755 2.1931 47 1 7.8170 1.2720 4.8891 48 1 6.3698 1.2719 3.7460 49 1 6.3689 -1.2648 3.7476 50 1 7.8162 -1.2649 4.8904 51 1 4.1204 -2.1325 -0.0062 52 1 1.6581 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284841899.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:26 Heat of formation + Delta-G solvation = 26.855970 kcal Electronic energy + Delta-G solvation = -29858.287109 eV Core-core repulsion = 26016.486854 eV Total energy + Delta-G solvation = -3841.800255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.59451 -39.46435 -37.93657 -36.00219 -33.98170 -32.92781 -32.77034 -31.08239 -30.36064 -29.87414 -29.60497 -25.87585 -25.38573 -22.90356 -22.86875 -22.59684 -21.77986 -21.41130 -20.42316 -19.80266 -18.82765 -17.46646 -16.76747 -16.33589 -15.93197 -15.52955 -15.14351 -14.84029 -14.70560 -14.42545 -14.00458 -13.80903 -13.64387 -13.58631 -13.53027 -13.39378 -13.05391 -12.83571 -12.82939 -12.69916 -12.29131 -12.11706 -12.04958 -11.48830 -11.31986 -11.28960 -11.13514 -11.05947 -10.89035 -10.72621 -10.69306 -10.37970 -10.27011 -10.05856 -9.94190 -9.66823 -9.54115 -9.33290 -9.05511 -8.65218 -8.50116 -8.37370 -6.67614 -5.79883 -3.22694 1.13864 1.27483 2.60074 3.11877 3.36683 3.42915 3.43457 3.66138 4.15224 4.45284 4.48161 4.58910 4.70653 4.75493 4.84238 4.87940 4.91442 5.19074 5.23242 5.24413 5.27073 5.31480 5.33009 5.35203 5.43078 5.53946 5.55209 5.60499 5.71446 5.78156 5.90833 5.91456 5.93927 5.99021 6.10502 6.20883 6.24020 6.30606 6.41784 6.43720 6.46221 6.52040 6.57010 6.65535 6.74923 6.76231 6.83409 6.85155 6.93596 7.37192 7.58865 7.65462 7.77804 8.27298 8.44333 9.20428 9.83974 10.40859 11.28545 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019266 B = 0.002204 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.002544 B =12701.329625 C =13278.860865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.066 4.066 6 C -0.105 4.105 7 C 0.512 3.488 8 O -0.530 6.530 9 N -0.690 5.690 10 C 0.109 3.891 11 C -0.042 4.042 12 C -0.126 4.126 13 C 0.145 3.855 14 N -0.592 5.592 15 C -0.253 4.253 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.170 3.830 24 C -0.132 4.132 25 C -0.180 4.180 26 C -0.176 4.176 27 C -0.101 4.101 28 C -0.120 4.120 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.406 0.594 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.018 0.982 41 H 0.054 0.946 42 H 0.254 0.746 43 H 0.087 0.913 44 H 0.017 0.983 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.089 0.911 48 H 0.103 0.897 49 H 0.104 0.896 50 H 0.092 0.908 51 H 0.120 0.880 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.821 5.547 -6.098 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.066 4.066 6 C -0.145 4.145 7 C 0.298 3.702 8 O -0.406 6.406 9 N -0.341 5.341 10 C 0.022 3.978 11 C -0.061 4.061 12 C -0.165 4.165 13 C 0.019 3.981 14 N -0.315 5.315 15 C -0.383 4.383 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.211 1.211 23 C 0.044 3.956 24 C -0.171 4.171 25 C -0.218 4.218 26 C -0.214 4.214 27 C -0.119 4.119 28 C -0.138 4.138 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.243 0.757 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.035 0.965 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.108 0.892 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.110 0.890 51 H 0.138 0.862 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.243 5.418 -5.376 24.464 hybrid contribution 0.917 -0.545 -0.885 1.386 sum -22.326 4.873 -6.261 23.694 Atomic orbital electron populations 1.20783 0.91380 1.02722 1.02126 1.19901 0.95961 0.93287 0.99912 1.20952 0.94053 0.97443 1.01377 1.20950 0.94211 0.97351 0.99411 1.19235 0.93521 0.93558 1.00311 1.20707 0.93313 1.05366 0.95115 1.20495 0.82181 0.76359 0.91136 1.90678 1.55555 1.48806 1.45605 1.45462 1.06613 1.74132 1.07922 1.20925 0.92870 1.05353 0.78642 1.20775 0.87398 0.98135 0.99780 1.22026 0.98918 0.98092 0.97471 1.20887 0.90726 0.87975 0.98536 1.44033 1.40076 1.05371 1.41976 1.19123 1.06581 1.17443 0.95150 0.91816 1.25052 0.97497 1.01599 0.95493 1.70023 1.39952 1.31945 1.12716 0.86382 0.79987 0.79702 0.80750 1.20899 1.21661 1.21079 1.20696 0.86735 0.97127 0.90997 1.22163 1.00217 0.93931 1.00762 1.23415 1.02604 0.95154 1.00677 1.23319 1.02444 0.94784 1.00855 1.20972 0.94230 0.97419 0.99277 1.20962 0.94060 0.97468 1.01282 0.91317 0.91626 0.91640 0.86243 0.86290 0.87991 0.87924 0.75714 0.90419 0.92906 0.92676 0.96439 0.92788 0.93589 0.89513 0.96518 0.93070 0.92812 0.89228 0.87844 0.87783 0.88980 0.86224 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 2 C -0.09 -0.86 5.88 -104.63 -0.62 -1.47 16 3 C -0.12 -1.17 9.70 -39.59 -0.38 -1.55 16 4 C -0.10 -1.05 9.70 -39.58 -0.38 -1.43 16 5 C -0.07 -0.71 4.37 -104.62 -0.46 -1.17 16 6 C -0.11 -1.00 5.83 -29.03 -0.17 -1.17 16 7 C 0.51 6.52 7.53 -10.99 -0.08 6.44 16 8 O -0.53 -8.37 11.51 5.55 0.06 -8.31 16 9 N -0.69 -8.78 5.39 -47.60 -0.26 -9.04 16 10 C 0.11 1.57 2.48 -131.81 -0.33 1.24 16 11 C -0.04 -0.66 2.28 -90.58 -0.21 -0.87 16 12 C -0.13 -1.99 4.83 -26.61 -0.13 -2.12 16 13 C 0.15 2.89 6.52 -3.71 -0.02 2.87 16 14 N -0.59 -14.27 3.00 -172.58 -0.52 -14.79 16 15 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 16 H 0.06 1.67 7.88 -52.49 -0.41 1.25 16 17 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 18 N -0.90 -25.85 11.20 55.49 0.62 -25.23 16 19 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.17 3.94 5.27 -3.93 -0.02 3.91 16 24 C -0.13 -2.41 5.20 -26.83 -0.14 -2.55 16 25 C -0.18 -2.59 9.36 -26.73 -0.25 -2.84 16 26 C -0.18 -2.60 8.91 -26.73 -0.24 -2.84 16 27 C -0.10 -1.07 9.70 -39.59 -0.38 -1.46 16 28 C -0.12 -1.18 9.70 -39.59 -0.38 -1.57 16 29 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 36 H 0.41 4.64 6.66 -40.82 -0.27 4.37 16 37 H 0.08 1.28 7.90 -51.93 -0.41 0.87 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.85 6.50 -51.93 -0.34 0.51 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 43 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.88 7.24 -51.93 -0.38 0.51 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 48 H 0.10 1.60 6.38 -51.93 -0.33 1.27 16 49 H 0.10 1.68 6.37 -51.93 -0.33 1.35 16 50 H 0.09 1.31 7.59 -51.93 -0.39 0.92 16 51 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 52 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 405.96 15.07 6.12 6.12 Total: -1.00 -31.14 405.96 -11.70 -42.83 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -8.63 Total: 6.01 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -4.07 Total: -13.91 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.15 Total: -49.06 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.06 Total: -8.31 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.14 -11.70 -42.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284841899.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.687 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds